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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0307800 |
| Transcript ID | LotjaGi6g1v0307800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase obg; TAIR: AT5G18570.1 GTP1/OBG family protein; Swiss-Prot: sp|Q8L7L0|OBGC_ARATH GTP-binding protein OBGC, chloroplastic; TrEMBL-Plants: tr|A0A1J7H1V8|A0A1J7H1V8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0307800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62502460..62507964) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAACAACAATGTTTCGTAGATTGCTTGAGTTGTTCCACTGTCATGAAAATGGCGGCTTCACTCTCACCGTGGTTCTC TCCCACCGCCTTCGCTCGCTCCAACCCTCGCACACCCAACACCAACAAGCTTTTCCCAGCCTCTAAACTCAAGAAGCAAG CCGCCAAACGCAAGTCCTCGCCGGAACCGGTGGTGCTCTCCGGCGGCGACGCCACTACCTACACTCGTCTTCCTCTCAAG CACGACTACTCATTCCCCTCTACCCCGCTTTCCACTTCCGAAGTCAAACTCTCCGAGTCAATTCACCGCAGCTACAAACA GAAACCAGGAAAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGAGTTCATTGATGGAAGCTTTGAAGGAAATGTTGATTTTG AATCTGAAGGCGAAGAGGAGGAGGAGGAGGAGGAGGAGGGAGAAGAAGAAGAGGAATTCGGCTATTGGGGTGAAGAGGGT GTTGAGAGTAACGATGTTTCGAGTTTGGAGAACGACGAAAATTCGGACGGTGAGGTGAAGGAGAAGGGGGTGCCGGCGGT GATGCGGTGCTTCGACCGGGCTAAGGTATACGCGAAGGCGGGAAACGGAGGGAATGGGGTGGTGGCGTTCCGCCGGGAGA AGTTCGTGCCGTTAGGGGGGCCGTCGGGTGGAGACGGAGGGAGAGGTGGGAATGTGTTTCTGGAGGTGGATGGGGCAATG AACTCGCTGTTGCCGTTCCGGAACGGCGTGCATTTCAGGGCGGGGAGGGGGTCTCATGGGCAGGGGAGCTTGAAGTGTGG GGCCAAGGGGGAGGATGTAGTGGTGAAGGTGCCGCCGGGGACGGTGGTTAGGGAGGCCGGTGGGGACAGGGTGCTGTTGG AGATGGTGTCTCCCGGACAGAGGGCGTTGTTGTTGCCGGGTGGCCGAGGTGGAAGAGGGAATGCTTCCTTCAAGTCTGGG TCTAATAAGGTTCCCAAGATTGCTGAGAATGGTGAAGAAGGTCCTGAAATGTGAGCTCTTCTTCAATGCTTTTAAATGCT CATGTGTTATATGCTGTGCTTCCACTATATTCTGTTCAATGATAGTTATATATGATCATGGACAAGATTCAATTTGGTTA CAGACTTACATACATGTAGAAGAAGCACGGCCATGTCCAGAACTTAGTTTAGAAATATAATATATGCCTTACAGATGATA GCATTCACTTTGAGGCAAAAAGAGAACATAACTCTACTTATGGATTGGATGAATGTACTTTCACGTTAACTCAACTGGTA TCCAAACACAATCTTTTGTAATAGCTTTTATCAGCTTATGACATGGTTTCACTACATGTATAACCAAGTCATCTAGAGTT TGATCATTGTTGTCGTCCATTATTCTAGTAAAAAAGTTGAATTTCAGCACAAGATATGTGAACTTGTGCATTGTCCTACT TTAAACCCAATGGTCTCTTGCTGAGGGGGCATATTAGAAATATAATATAAAATCATTTACATGTCTTTATCCTACAGCTT AAGTGTTTGCGATAGTTGATTCATGACAATTTTCATCAGAAATAAAAAATAGTTTTAGTTAATACTAATAAAAGCTTGGT GAAATCATGAACTAACTCGTAACCGATGTCTATTTTTTTTTCTTTTTCCATTTGGTATGATTTCCAAATTATATGAGAGT TTGAGAAGAATGGTTTCTTTTTATCAGGTGGTTGGAGTTGGAACTCAAGCTGGTTGCTGATGTTGGTATTGTTGGGGCTC CAAATGCGGGGAAAAGTACACTTTTGAGTGTCGTTAGTGCTGCAAAGCCAGAGGTGGCAAATTATCCCTTCACAACCCTG CTTCCCAATCTTGGTGTTGTTTCCTTTGACTATGATTCAACGATGGTAGTGGCAGACCTTCCGGGACTTCTTGAAGGAGC ACACCGAGGTTTTGGTTTGGGTCATGAGTTTCTACGACACACTGAGAGGTGTTCTGCCCTGGTAAGCAGGCATTTCTTAT CAAGATGATATCAATGATTTTCCCCTGCTGTATATAGTTAGACATATATAGCTTACATTCTCAGCTCTTTTTTGCTGTCC TTAGTTTTATCTTAATAGTCAGGAAAGACTATGGTTGTTGTTGTTATTGACTTACTGTATACCCATCTTATTCTACCTAA GTCAATCAATTAGTAAATTGTCAATCCAGACTATTCTGAATCTTTCATTATGTCTGAAAGAACTTTGTTGGATTTTAAAT TTGCAATTGATCCTAAGAATGATTGATCAACTTTTACACTGCTCACCCAGGTAGAATATATTTGTACGATTTCCCCCTAT ATCAACCTTCTGTTATTGCTGTATGGTATTGTTAGGCACGCTATTTCCAAATATAACTAATTTGATATCGTTTGCCTGTT TTCCCTTGCTACATCCCTGAAAATTGCTGTTAAAAACAAGCCACTATATTTGGTTTTACTATATTTGGTTTTAGGTACAT GTTGTTGATGGTTCATCACCGCAGCCCGATCTTGAGTTTGAGGCAGTTCGTCTAGAGCTGAAGCTGTTTAATCCTGAAAT TGCTGATAAGCCTTTTATTGTTGCTTATAACAAAATGGATCTTCCAGAAGCATATGAAAACTGGGAGTCCTTCAAAGAGA AGTTACAATCTTGGGGGATCACACCTTTTTGTATGAGTGCTGTCAAAAGCGAAGGTACTCATGAAGTTATCTGTGCTGCT CATGAGCTTTTGCGTAAAAGCAAAGAAGATAAGGAGGAGTATGACTATGAAGGTTATATTTTGCTTTGTACTTATTCTAT ATATTTTGTCACATTACCAGAATATTCTTTTTTTTTTCTTCTCAAAAAGGCATTTCTTATGAACAAATATGACGTATTCC AGATGGAAGAGATATGGTAAACTTGAACCATGTAGCTGATGCAGTACAGAAGCAGCGAAGCGCATCCATTAGTGATTTTG AGATTTTTCACGAAAGCAATTCAAATGTCTGGCGTGTAGTTGGATCTGGATTGCAACGTTTTATCCAGATGACAAATTGG CGGTAGGTTACAGAGTAAAAACATGATCATGAATACAATTCCTTAATGTGATTTATTGTTTTTAGAGCAATGTGTTATTT TTCGTTACATTTGAAAAATAATTTGTTGAGGTGTTACTTCTAATCATGTTCAACAAGTAGTGGTTAACTCCTTGTCCTGA ATTTATTCTTCATTGTTAACAGAACATTTCCTACGCTTCCTGAAGCTTTGCATAGATTTTCAAACTTCACATAAAAGATG TAAAAACAACATAACACTCTTAGATTTGTATGAAACTTCATGGAAGAACCTTTCTGGAATAGTGTGAAAAATATCAAGAT TGGAAAATTCATCCTCCTCTTAATTGATACTTGGTATGTGTTGGGAAAAAAAAAAGCGTTAGGATAAGCATTATGCTTGA AATTGCAACCTCTGTTCTGTTCAGAACTAGTCTCATATAAAGTAGTGGATACTTTTAACAGGTACATGGATTCAGGGAGA AGATTCGAACATGTTCTTGAGGCTTGTGGTGTGTATAAGTCTCTCATGAAACGTGGGATAAAGGAAGGCGACACAGTGAT TGTTGGAGAGGTGTGTCTTTTGTTTCTCTTTGGCATTTCTGTTTTGTAATCCTTTCTAGAATGATGAATAAAGGTATGGT TGATTTACTGTATAAAATTTACTTGTCATTAACTGCTTCACATTCACTTAACATGACTTGTCTTATAAGGCAAAAATGTC AAAAACAATCTGGACACGTCATCTATCAAGTGCAAAGAGCTTCTTTTTAATATATCTTTCATTAGTTCTTCTACAATATT TTGCTCCATTTCATAATGCATAGCATACTTAATGACCATTTGCTCTGTTACATATCAGATGGAGATGATATGGCATGATT CCAAAGACAAGTCAGGTGCATCAAGGATGAAGAAGATCTCCACAGATTCAATTAAATGGCCTGAATGGAAGTAACACCTC TCTATTTTGGCGCTTCTAGATCCATGTGTATTGCAACTATGCCATAGGTAAGGAAAACGTTTTTCTCGTATGGTTCTGTC CCCTGCTACAAACATGAAACTTGGCTATAATCTAAATTGAATATAATGCGTTTTACATGACTTCCCCCCTATTACGTAAC AGAGAATATTTTTGTTAGGGAATAAAATAATAATCTCTTAAAAATGTTGGTTATTAACATTGCCTAACAATATTCCTGGA ATTTCAATTTGTAATGGTGCCTAAAACAGCCAAACGGAGAGGTGAGTATGTGACTACCTTTCCTTAGTTCTAACGTACCT TCCCGGTGGCTATGTTATTACTTCATTTTTTTTTATTTGAGTGTATTTATGGATATAAGATCATAATGCCACTGTTATAG TAGTTGTACTTGACAGTATTTTCAAACATTTGTAATTTGCTTTATGTAACTTTGTGAAATATCAAGATTATCAATTAGGT ACCCCCTTGAAAATTCTGTTTACTTCTCTTTGATGAGCAAAAGTTCATGCAGGAAGCAAGTTTAGTCAAAATTTGAGAAT CTATCTCAAAAAGCATAAGGGTAAAGCAAGCCAATTACATGCTTGTCCTGTGATGGTATGAGGGTGCATTTACAAATTAC AATTTCAAATTCTTTTATTCAACTGGAAGCTAAGATCTTCTGCAACTGCTCACAAGTGAATAGGTAAGGTACAATTGAAG ATGTGTGCCATCTTACGTTATTTATTGGCTTAAATTGGTTTAACAGATAATTAACCAACAGAAGAGAATATAATTGGTTA TGTAATTGTATATTGATTTGCCATAAACAATCTTGTACTAAGATTGATAATGTCTAATCTGTTTACATTATCTTTGACAG ACTGCTCTCATGCAGGTTGAATAATTTGATGAAATTAAGAGTGAAGATCAAATTTAGAGTTTCAAGTTTCACATGAAGTC CCAGTTGTTATATTTTATCTTTAGATAGTTTGTAGCTTGTTTTAGTTGCTGGTAAACCATATTATTATTCTGTATTCCAA GTGTAACAAAAAAAAAACAATTTATTACTCTTGAGAAGCGGTCCTGATATTGTAGGGAGGAAAAGATGTTAATGATTATA GCTGTAATCTGCTACTAGCAATGTATTAGACATACTGTGTTTTAGGGGTATAAGAGGCTCTTCTTCATCTATTTACTGTA TCAGAGTGTCAAAATGTTAGCAACATACTAGCATGTTTGGATCAACATATTTTTCTTCGGAATCAATTTTGGCATGAACC ATGTTTTGAATTGTTTGTGCATATCAATTGTCAGTGACAGTGTCCACCCTGATATGTAATGATTTAAATGTGTTTTTTGT TTATTCATTTATTTTTTCAGACTATTCATTATTCATTACATACTGTCATTTTTTTGGTCAATCATACTGTCATATATTAA GGTTGGTTCCTAAAATCATTAGTACCACCTAAGCTGAAGCGCTAGCATGATATTCTATAAATAAA
CDS sequence (LotjaGi6g1v0307800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATGGCGGCTTCACTCTCACCGTGGTTCTCTCCCACCGCCTTCGCTCGCTCCAACCCTCGCACACCCAACACCAA CAAGCTTTTCCCAGCCTCTAAACTCAAGAAGCAAGCCGCCAAACGCAAGTCCTCGCCGGAACCGGTGGTGCTCTCCGGCG GCGACGCCACTACCTACACTCGTCTTCCTCTCAAGCACGACTACTCATTCCCCTCTACCCCGCTTTCCACTTCCGAAGTC AAACTCTCCGAGTCAATTCACCGCAGCTACAAACAGAAACCAGGAAAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGAGTT CATTGATGGAAGCTTTGAAGGAAATGTTGATTTTGAATCTGAAGGCGAAGAGGAGGAGGAGGAGGAGGAGGAGGGAGAAG AAGAAGAGGAATTCGGCTATTGGGGTGAAGAGGGTGTTGAGAGTAACGATGTTTCGAGTTTGGAGAACGACGAAAATTCG GACGGTGAGGTGAAGGAGAAGGGGGTGCCGGCGGTGATGCGGTGCTTCGACCGGGCTAAGGTATACGCGAAGGCGGGAAA CGGAGGGAATGGGGTGGTGGCGTTCCGCCGGGAGAAGTTCGTGCCGTTAGGGGGGCCGTCGGGTGGAGACGGAGGGAGAG GTGGGAATGTGTTTCTGGAGGTGGATGGGGCAATGAACTCGCTGTTGCCGTTCCGGAACGGCGTGCATTTCAGGGCGGGG AGGGGGTCTCATGGGCAGGGGAGCTTGAAGTGTGGGGCCAAGGGGGAGGATGTAGTGGTGAAGGTGCCGCCGGGGACGGT GGTTAGGGAGGCCGGTGGGGACAGGGTGCTGTTGGAGATGGTGTCTCCCGGACAGAGGGCGTTGTTGTTGCCGGGTGGCC GAGGTGGAAGAGGGAATGCTTCCTTCAAGTCTGGGTCTAATAAGGTTCCCAAGATTGCTGAGAATGGTGAAGAAGGTCCT GAAATGTGGTTGGAGTTGGAACTCAAGCTGGTTGCTGATGTTGGTATTGTTGGGGCTCCAAATGCGGGGAAAAGTACACT TTTGAGTGTCGTTAGTGCTGCAAAGCCAGAGGTGGCAAATTATCCCTTCACAACCCTGCTTCCCAATCTTGGTGTTGTTT CCTTTGACTATGATTCAACGATGGTAGTGGCAGACCTTCCGGGACTTCTTGAAGGAGCACACCGAGGTTTTGGTTTGGGT CATGAGTTTCTACGACACACTGAGAGGTGTTCTGCCCTGGTACATGTTGTTGATGGTTCATCACCGCAGCCCGATCTTGA GTTTGAGGCAGTTCGTCTAGAGCTGAAGCTGTTTAATCCTGAAATTGCTGATAAGCCTTTTATTGTTGCTTATAACAAAA TGGATCTTCCAGAAGCATATGAAAACTGGGAGTCCTTCAAAGAGAAGTTACAATCTTGGGGGATCACACCTTTTTGTATG AGTGCTGTCAAAAGCGAAGGTACTCATGAAGTTATCTGTGCTGCTCATGAGCTTTTGCGTAAAAGCAAAGAAGATAAGGA GGAGTATGACTATGAAGATGGAAGAGATATGGTAAACTTGAACCATGTAGCTGATGCAGTACAGAAGCAGCGAAGCGCAT CCATTAGTGATTTTGAGATTTTTCACGAAAGCAATTCAAATGTCTGGCGTGTAGTTGGATCTGGATTGCAACGTTTTATC CAGATGACAAATTGGCGGTACATGGATTCAGGGAGAAGATTCGAACATGTTCTTGAGGCTTGTGGTGTGTATAAGTCTCT CATGAAACGTGGGATAAAGGAAGGCGACACAGTGATTGTTGGAGAGATGGAGATGATATGGCATGATTCCAAAGACAAGT CAGGTGCATCAAGGATGAAGAAGATCTCCACAGATTCAATTAAATGGCCTGAATGGAAGTAA
Protein sequence (LotjaGi6g1v0307800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMAASLSPWFSPTAFARSNPRTPNTNKLFPASKLKKQAAKRKSSPEPVVLSGGDATTYTRLPLKHDYSFPSTPLSTSEV KLSESIHRSYKQKPGKEEEEEEEEEEFIDGSFEGNVDFESEGEEEEEEEEEGEEEEEFGYWGEEGVESNDVSSLENDENS DGEVKEKGVPAVMRCFDRAKVYAKAGNGGNGVVAFRREKFVPLGGPSGGDGGRGGNVFLEVDGAMNSLLPFRNGVHFRAG RGSHGQGSLKCGAKGEDVVVKVPPGTVVREAGGDRVLLEMVSPGQRALLLPGGRGGRGNASFKSGSNKVPKIAENGEEGP EMWLELELKLVADVGIVGAPNAGKSTLLSVVSAAKPEVANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLG HEFLRHTERCSALVHVVDGSSPQPDLEFEAVRLELKLFNPEIADKPFIVAYNKMDLPEAYENWESFKEKLQSWGITPFCM SAVKSEGTHEVICAAHELLRKSKEDKEEYDYEDGRDMVNLNHVADAVQKQRSASISDFEIFHESNSNVWRVVGSGLQRFI QMTNWRYMDSGRRFEHVLEACGVYKSLMKRGIKEGDTVIVGEMEMIWHDSKDKSGASRMKKISTDSIKWPEWK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 165 | 165 | - | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| MobiDBLite | 12 | 32 | 21 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 633 | 616 | - | – | |
| PANTHER | 97 | 593 | 497 | 5.9E-182 | – | |
| PANTHER | 97 | 593 | 497 | 5.9E-182 | – | |
| MobiDBLite | 98 | 143 | 46 | - | – | |
| Coils | 115 | 135 | 21 | - | – | |
| Gene3D | 171 | 330 | 160 | 3.2E-52 | ||
| ProSiteProfiles | 173 | 331 | 159 | 67.403 | – | |
| Hamap | 174 | 500 | 327 | 43.195 | ||
| TIGRFAM | 176 | 498 | 323 | 5.5E-119 | ||
| SUPERFAMILY | 176 | 330 | 155 | 3.79E-47 | ||
| Pfam | 177 | 330 | 154 | 3.1E-51 | ||
| MobiDBLite | 289 | 314 | 26 | - | – | |
| Gene3D | 331 | 512 | 182 | 1.6E-49 | – | |
| CDD | 332 | 499 | 168 | 1.32284E-84 | ||
| ProSiteProfiles | 332 | 500 | 169 | 68.127 | ||
| Pfam | 333 | 453 | 121 | 5.7E-23 | ||
| SUPERFAMILY | 333 | 519 | 187 | 1.13E-44 | ||
| PRINTS | 334 | 354 | 21 | 6.3E-34 | ||
| PRINTS | 355 | 373 | 19 | 6.3E-34 | ||
| PRINTS | 383 | 398 | 16 | 6.3E-34 | ||
| ProSitePatterns | 385 | 398 | 14 | - | ||
| PRINTS | 400 | 418 | 19 | 6.3E-34 | ||
| ProSiteProfiles | 530 | 609 | 80 | 22.899 | – | |
| Gene3D | 537 | 609 | 73 | 2.9E-16 | ||
| SUPERFAMILY | 537 | 609 | 73 | 1.19E-18 | ||
| TIGRFAM | 538 | 607 | 70 | 3.1E-15 | ||
| Pfam | 538 | 607 | 70 | 5.6E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi6g1v0307800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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