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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0375900 |
| Transcript ID | LotjaGi2g1v0375900.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT1G07510.1 FTSH protease 10; Swiss-Prot: sp|Q8VZI8|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial; TrEMBL-Plants: tr|A0A1J7GZI6|A0A1J7GZI6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0375900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87333634..87338608) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAACAGATACGGAATTTTATTTTCCGTATTGATACGGAAGTTTAAATTCCATATTCCAAACTCAATTCCCTATTCAA ACCCTTGTCATGCGCATTCAACATCATTTGATTCTGTTAAAATCATGATGAAGCAAGGGTTAAAATTCAGATTCTCACTT TCCTGATTTCTCTCATCGCCGCCGTCTCCGCCTAACGTGCGACAGCTGATGGCTGAGCAGCCGGGTTCCCCTCCGTGCCC TTCGATGAAGCAAAGTAAGTTAGGGTTATGTTTTTTATGAAATGGAAACTGTTTCTGATTCAATTGCTCTTAGCAACTGA ACTCCGATTCTCCCCTTTGTTTGGCTTGTGTTGTGCTTCAGCTAGCGTTCTGATTAGTATTACCATTTTTTCGCAGATTC TGAGAAGCTCTCCACCAAGGGGAAGAAGGAAGTCCCAAATGGAAACAATGGTATTTTCAAGAGAATTGATCAAATATTCA ACTTTATAGGTATAGGGATGTGCTTATTTTCTTATCAACTAGGAAGCTCCATTGCAAATTATTTGAAAATGGTGGTCATA GGTCATATAATGACTAATATGTTTTCTCAGCTTAATTAATTTGGTGTGTTTCTGTGTCTAGGAATTAATCATGTATCTAT TTTCTAGTTTATCTTGAAATAAAAGGGAACCACTAGCAAAGTTTAACACTTGAACTCTCCTTTTGATTTCAGATCATGGA AATTCTCGAAAGGTTTTAACTGTCTCAGTATTGGTGATAGCCTCATTATTGGTGATAGGGCTATTTTTTGTGCCTTTTTC TTTTGGTCCTGACAAGGAGGTAAGAATAACTTAAAGTGAATTACCAGGCAAATTGTTTTAATTTTTTTTTATGTGGGTGA AGTTGGGTTGAGTTGAGAACTTGAGATATGATTTCAAATGCATGAGAAGTGAACCTTGTGCTGCCATGATGAATGCGGAA ATTGGTAGTACAAAAGAGATTATGTTAAACTGGATTTGAGTCTTATATAATTTATAATAATACTGCACTGGCTTAGACCT AGGGGAGCTTTGGTATAACGGCTGATTTTTTTGAAATTAGCACTTTGTAAATGCAAGTTAAGGCTGCCTATTTTAGACTC ACAACAGGTTCAGCTCTTCCCTGGAGCCTGCCATGGCTGGTGTGCTTTGTTTGTTTAGTATTTTGTCTATTGCTTACTTG GGTAACTCTTGTGATTTCTTTCCTTCTTGCTCGTCTGTATCCATAGGTGTTTGTATATAACTTGAGTCTTTTCCCTCTGT ATCCATAGGTGTTTGTATATAACTTGAGTCTTTTCCCTCCCTTTCATTAGCTTTTTCGTGAAGCTGCATTTATGGATAAA TTTAAACTCATGCGTTACTCTTTTCATTTTTATTTGGCTTAAGTCACTATTGACTTTTATTTGTGGTTTAAAATGTGTAT GTCTTTGAGTTAAGCTTTATGCTGCTGTCATCTACTGCTTTTGTTGAAGATCCATAAAAAAAGTTGTTATTAGGATATAT TTGAGATTTTTATATCCCACTGATTTCTAGCATCTGGTAGTCTTAAACTAGCTTGAGTTTTGACCATTGCTTTACATTTC TCTATATTATATTTATTCTGAGGGTATCTTTGTATGATAATTGGGATGTGAATCTGATCACATGCCTTTTGGCAATGTGA TACCTTTCTTCTGTGTTTGGATATTTTTGGTTTCTTTTTCAATGCCATCATCTTGCTGACTTGGAACAGAATTCGATTCT TTGCAGATTAGCTTTCAGGAGTTTAGAAATAAACTATTGGAACCAGGGTTAGTAGACCACATTGTTGTCTCAAAGAACTT AGTTGCCGAAATATATGTACGGAGCTCTCCCCGTGATCAAACTGACAATGAAGTAGTCCAAGGGACATTCTCTCCAAAGG GATCTGGAGGTCAATACAAATATTATTTCAATATTGGAAGTATTGAGTCTTTTGAGAAGAAGTTAAAGGAAGCACAAGAG GAACTAGGCATTGACCATCATGATTATGTACCTGTTACATATTCTTCTGAAATCGTTTGGTACCTGGAGTTAATGCGATT GGCTCCAGAATTGTTGGTTTCAGTATCTTTCGTATATCTGGTGAGAAGACTACATGGATTTGGTGGTGCCAATATTACTA AAGTAGACAAAAATGCCAAAATCAAGGTCAGTAGCTTTCTTATTTGTCTATGATGGTTATTGTGTTTAAGAACTTGCTCC ATAGTTGCCATCATTGCCTTTCCCACTTTCTCATTGTAGTTTTCTCTTTCAGGGAGTATATGTAGTATGGGTGAATAACT TGTAATAAGTTCATTTAAGAGACTATATTTTTTATTATTTATATTCATTTGGCCAGGTCTATTTCAAAGATGTTGCGGGC TGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTAAAGAACCCAAAAAAATATGAAGAACTTGGTGCGAA AATTCCAAAAGGTGCTCTTCTGGTTGGTCCTCCCGGCACAGGGAAAACCCTTTTAGCAAAAGCAACTGCCGGGGAGTCTG GTGTGCCATTTCTTTCTATATCTGGTTCTGATTTCACGGAAATGTTTATTGGTGTCGGACCATCTAGGGTGAGAAGCTTG TTTCAGAAAGCAAAGAAGTGTGCTCCCTGTATTATATTTATTGATGAGATTGATGCGATTGGTCGTGCAAGGGGACGTGG AGGTTCCTCTGGGGCAAATGATGAGCGCGAAAGTACTTTAAATCAATTGCTGGTGGAGATGGATGGTTTTGGAACCACAG TTGGAGTTGTTGTGCTGGCAGGAACAAATAGACCTGATATATTAGACAAAGCCCTACTTAGACCTGGGCGATTTGACCGC AAGATAACAATTGATAAACCTGACATCAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCA TGAGCCTTCATATTTTTCAGAAAGGCTTGCAGCCCTTACTCCAGGATTTGCTGGAGCAGAGATTGCTAATGTTTGCAATG AAGCTGCTCTAATTGCTGCAAGAGGTGAAAAAACACAAGTCTCAATGGATCACTTTGAGGCAGCTATTGATAGGATTATT GGTGGTTTGGAGAAGAAAAACAAGGTGTGCCATTTTAAGTTTTTATATTATTATTTAGAAAGGCATAGGAAAGGGGTGGG GTGGGGCTTGGTATTTAAGTTTATAAAAGTTCTGCACGTTATAGGCATAGTTATATGCAATGAATTGAAAGTATTGAACT GAGTTTGGAGCTCTCACTTTGCTTTTTCTTTTCAGTTACTGGTTGAAATTTATCTAATACCCTGTTTCATATCAAGGTAA TAAGCAAGCTGGAAAGGCGCACTGTCGCTTACCATGAGTCAGGCCATGCTGTTGCTGGTTGGTTCTTGGAATATGCTGAA CCCTTGTTGAAAGTAACTATTGTTCCTCGTGGAACAGCTGCTCTTGGATTTGCGCAGTACGTTCTGAGTGAGAACCTTCT CATGACAAAGGAGCAGCTTTTCGATATGACTTGTATGACCCTTGGTGGTCGGGCTGCAGAGCAGGTTGTCTAGCATTTCC TGTTTTGTTTACTTACTGTTTTCGTCTCCTGTTTTTTCATTAGCACTTTGTTGTATGAGTAATGCTGAATTGCTGATCTT TCTAGTGAAAGGGTTTATTATGATTCAGACTTTTTCACTTTGACTAGTGATATCGCTAAATAAGTCATTATATATGTGGT AGAGCAATCCTCACCTCGACCTTAGCTTTTGGCGTCAAGTTAGGTCTAGCCCGAATTCGAGTATGGTATTAGAGTCTATC CTAGATCTATTTATTGGAGATCACCCATAAATGAACTACCCATGTTCAGTCTTGCAAACTTCTCGCTCCTAAATTCCAGC CCTTGGTGTGGGGTGTGTTGAGAAATCTCTCATTGACTAGTGATATGAATAAATAAGTCTCTACATAGGATAGAGCATTT CTCACTCTTGAGCTTGTTTTTGGGGTAAAGTAAGACTCAGCCGGAATTCTAATGCAGAGATTTAAGTACATTCCTTATTA TATTTCTAAATTACAAATCTTATTACTGCCTTATTTTATTGTATAATGTTTTTCTCTTATCTGATTCTTCAGCACCTCCA AAGCCAAGAAATGAGAAAATGATTGTTTCCCTCCCTCTTTACTGCAGGTTCTCATTGGGAGAATCTCAACAGGAGCACAG GACGACTTGGAAAAAGTGACCAAGATGACTTATGCTCAAGTGGCAGTCTATGGTTTCAGTGACAAAGTGGGCCTCCTCTC TTTCCCTCAGAGAGAAGACTCATCTGAGATGTTGAAGCCATACAGCAGCAAAACTGCTGCAATCATTGATAGTGAAGTGC GAGAATGGGTGAATAAAGCGTATGAACGTACAATACAGCTAATTGAGGAACACAAGGAACATGTAGCTCAAATTGCAGAG TTGCTGCTTGAAAAAGAGGTACTTCACCAAGATGACTTGGTTCGAGTTTTGGGGGAACGTCCCTTCCAGGCTAGTGAACA CACCAGTTATGATAGGTCAAAGCAAGGTCCCCAAGCGGACGACGAAAAAATCATAGAAAGCACCGTCAATGGGCCTGAGA AGGGTGGTGGGGATTCACCTTTAGATCCCCAGGTAGTCCTGACATGAATAAGTTCATGTTTTTTTAAGTGTACATGAATA TCTTTTTTAGCTAAAATTAAAAATTTCATTTAAACTCTAATGGGGTATGCTTTAGAATAGTGACATTGGAAATATTTGAA GGTAGTCTGCAAACAGTGATGCAAATTACACCCAGCTTAAGTAGAAATAGATAGCAAAAACACATCTTTTTGTTTATGTG TTTTAGCTATTATTTTGTTTTTGTTAATTTGATAACATGGACAAAAATTGTATTATCACTACTAAGTAAATAAAATTCGT TTCTTATTTTTCTCA
CDS sequence (LotjaGi2g1v0375900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGCAGCCGGGTTCCCCTCCGTGCCCTTCGATGAAGCAAAATTCTGAGAAGCTCTCCACCAAGGGGAAGAAGGA AGTCCCAAATGGAAACAATGGTATTTTCAAGAGAATTGATCAAATATTCAACTTTATAGATCATGGAAATTCTCGAAAGG TTTTAACTGTCTCAGTATTGGTGATAGCCTCATTATTGGTGATAGGGCTATTTTTTGTGCCTTTTTCTTTTGGTCCTGAC AAGGAGATTAGCTTTCAGGAGTTTAGAAATAAACTATTGGAACCAGGGTTAGTAGACCACATTGTTGTCTCAAAGAACTT AGTTGCCGAAATATATGTACGGAGCTCTCCCCGTGATCAAACTGACAATGAAGTAGTCCAAGGGACATTCTCTCCAAAGG GATCTGGAGGTCAATACAAATATTATTTCAATATTGGAAGTATTGAGTCTTTTGAGAAGAAGTTAAAGGAAGCACAAGAG GAACTAGGCATTGACCATCATGATTATGTACCTGTTACATATTCTTCTGAAATCGTTTGGTACCTGGAGTTAATGCGATT GGCTCCAGAATTGTTGGTTTCAGTATCTTTCGTATATCTGGTGAGAAGACTACATGGATTTGGTGGTGCCAATATTACTA AAGTAGACAAAAATGCCAAAATCAAGGTCTATTTCAAAGATGTTGCGGGCTGTGATGAGGCAAAGCAAGAAATTATGGAG TTTGTCCACTTCCTAAAGAACCCAAAAAAATATGAAGAACTTGGTGCGAAAATTCCAAAAGGTGCTCTTCTGGTTGGTCC TCCCGGCACAGGGAAAACCCTTTTAGCAAAAGCAACTGCCGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCTG ATTTCACGGAAATGTTTATTGGTGTCGGACCATCTAGGGTGAGAAGCTTGTTTCAGAAAGCAAAGAAGTGTGCTCCCTGT ATTATATTTATTGATGAGATTGATGCGATTGGTCGTGCAAGGGGACGTGGAGGTTCCTCTGGGGCAAATGATGAGCGCGA AAGTACTTTAAATCAATTGCTGGTGGAGATGGATGGTTTTGGAACCACAGTTGGAGTTGTTGTGCTGGCAGGAACAAATA GACCTGATATATTAGACAAAGCCCTACTTAGACCTGGGCGATTTGACCGCAAGATAACAATTGATAAACCTGACATCAAA GGTCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCATGAGCCTTCATATTTTTCAGAAAGGCTTGC AGCCCTTACTCCAGGATTTGCTGGAGCAGAGATTGCTAATGTTTGCAATGAAGCTGCTCTAATTGCTGCAAGAGGTGAAA AAACACAAGTCTCAATGGATCACTTTGAGGCAGCTATTGATAGGATTATTGGTGGTTTGGAGAAGAAAAACAAGGTAATA AGCAAGCTGGAAAGGCGCACTGTCGCTTACCATGAGTCAGGCCATGCTGTTGCTGGTTGGTTCTTGGAATATGCTGAACC CTTGTTGAAAGTAACTATTGTTCCTCGTGGAACAGCTGCTCTTGGATTTGCGCAGTACGTTCTGAGTGAGAACCTTCTCA TGACAAAGGAGCAGCTTTTCGATATGACTTGTATGACCCTTGGTGGTCGGGCTGCAGAGCAGGTTCTCATTGGGAGAATC TCAACAGGAGCACAGGACGACTTGGAAAAAGTGACCAAGATGACTTATGCTCAAGTGGCAGTCTATGGTTTCAGTGACAA AGTGGGCCTCCTCTCTTTCCCTCAGAGAGAAGACTCATCTGAGATGTTGAAGCCATACAGCAGCAAAACTGCTGCAATCA TTGATAGTGAAGTGCGAGAATGGGTGAATAAAGCGTATGAACGTACAATACAGCTAATTGAGGAACACAAGGAACATGTA GCTCAAATTGCAGAGTTGCTGCTTGAAAAAGAGGTACTTCACCAAGATGACTTGGTTCGAGTTTTGGGGGAACGTCCCTT CCAGGCTAGTGAACACACCAGTTATGATAGGTCAAAGCAAGGTCCCCAAGCGGACGACGAAAAAATCATAGAAAGCACCG TCAATGGGCCTGAGAAGGGTGGTGGGGATTCACCTTTAGATCCCCAGGTAGTCCTGACATGA
Protein sequence (LotjaGi2g1v0375900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEQPGSPPCPSMKQNSEKLSTKGKKEVPNGNNGIFKRIDQIFNFIDHGNSRKVLTVSVLVIASLLVIGLFFVPFSFGPD KEISFQEFRNKLLEPGLVDHIVVSKNLVAEIYVRSSPRDQTDNEVVQGTFSPKGSGGQYKYYFNIGSIESFEKKLKEAQE ELGIDHHDYVPVTYSSEIVWYLELMRLAPELLVSVSFVYLVRRLHGFGGANITKVDKNAKIKVYFKDVAGCDEAKQEIME FVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFTEMFIGVGPSRVRSLFQKAKKCAPC IIFIDEIDAIGRARGRGGSSGANDERESTLNQLLVEMDGFGTTVGVVVLAGTNRPDILDKALLRPGRFDRKITIDKPDIK GRDQIFQIYLKKIKLDHEPSYFSERLAALTPGFAGAEIANVCNEAALIAARGEKTQVSMDHFEAAIDRIIGGLEKKNKVI SKLERRTVAYHESGHAVAGWFLEYAEPLLKVTIVPRGTAALGFAQYVLSENLLMTKEQLFDMTCMTLGGRAAEQVLIGRI STGAQDDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSSEMLKPYSSKTAAIIDSEVREWVNKAYERTIQLIEEHKEHV AQIAELLLEKEVLHQDDLVRVLGERPFQASEHTSYDRSKQGPQADDEKIIESTVNGPEKGGGDSPLDPQVVLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 53 | 53 | - | – | |
| Hamap | 34 | 699 | 666 | 32.016 | ||
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 54 | 77 | 24 | - | – | |
| Pfam | 58 | 165 | 108 | 3.6E-12 | ||
| PANTHER | 64 | 713 | 650 | 0.0 | – | |
| PANTHER | 64 | 713 | 650 | 0.0 | – | |
| Gene3D | 76 | 179 | 104 | 2.5E-26 | – | |
| Phobius | 78 | 713 | 636 | - | – | |
| TIGRFAM | 187 | 662 | 476 | 7.6E-195 | ||
| Gene3D | 211 | 397 | 187 | 4.5E-67 | – | |
| SUPERFAMILY | 221 | 469 | 249 | 7.51E-68 | ||
| SMART | 258 | 398 | 141 | 1.6E-20 | ||
| CDD | 259 | 396 | 138 | 1.03669E-26 | – | |
| Pfam | 263 | 395 | 133 | 3.8E-42 | ||
| ProSitePatterns | 366 | 384 | 19 | - | ||
| Gene3D | 398 | 476 | 79 | 3.0E-26 | – | |
| Pfam | 424 | 464 | 41 | 2.3E-12 | ||
| Pfam | 479 | 660 | 182 | 5.7E-63 | ||
| SUPERFAMILY | 479 | 669 | 191 | 3.79E-61 | ||
| Gene3D | 479 | 680 | 202 | 9.9E-67 | ||
| MobiDBLite | 669 | 713 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0375900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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