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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001245
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 1129 results. Now displaying 8 of 23 with 50 rows per page. This search has taken 5.591s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v3430180.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357455815|ref|XP_003598188.1| chr3 42082459 42089951 -
2 domain predictions
2 GO terms
Lj3g3v3430180.2
n.a. U-box domain-containing protein [Medicago truncatula] gi|357455815|ref|XP_003598188.1| chr3 42082459 42089951 -
2 domain predictions
2 GO terms
Lj3g3v3430230.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514870|ref|XP_003526125.1| chr3 42121977 42125580 +
2 domain predictions
2 GO terms
Lj3g3v3430300.2
n.a. Serine/threonine protein kinase [Medicago truncatula] gi|357452493|ref|XP_003596523.1| chr3 42138651 42141528 +
2 domain predictions
2 GO terms
Lj3g3v3639930.1
n.a. PREDICTED: probable receptor-like protein kinase At5g59700-like [Vitis vinifera] gi|359486440|ref|XP_002275845.2| chr3 44323482 44326830 -
2 domain predictions
2 GO terms
Lj3g3v3639940.1
n.a. PREDICTED: probable receptor-like protein kinase At2g39360-like [Cucumis sativus] gi|449451880|ref|XP_004143688.1| chr3 44323863 44326830 -
2 domain predictions
2 GO terms
Lj3g3v3639940.2
n.a. PREDICTED: probable receptor-like protein kinase At5g59700-like [Vitis vinifera] gi|359486440|ref|XP_002275845.2| chr3 44323863 44326830 -
2 domain predictions
2 GO terms
Lj4g3v0120340.1
n.a. PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max] gi|356520095|ref|XP_003528701.1| chr4 1301163 1302973 -
3 domain predictions
2 GO terms
Lj4g3v0216610.1
n.a. Protein kinase 2B [Medicago truncatula] gi|357493723|ref|XP_003617150.1| chr4 2714541 2717943 +
2 domain predictions
2 GO terms
Lj4g3v0338160.1
n.a. Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activationgi|422919080|pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1] gi|388325711|pdb|3UIM|A chr4 4281141 4281816 +
2 domain predictions
2 GO terms
Lj4g3v0412850.1
n.a. Receptor-like-kinase [Medicago truncatula] gi|357476053|ref|XP_003608312.1| chr4 5475807 5476634 +
2 domain predictions
2 GO terms
Lj4g3v0423100.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730-like [Cicer arietinum] gi|502142322|ref|XP_004504900.1| chr4 5636552 5639183 -
2 domain predictions
2 GO terms
Lj4g3v0424250.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410-like [Glycine max] gi|356527947|ref|XP_003532567.1| chr4 5698730 5703096 +
2 domain predictions
2 GO terms
Lj4g3v0424270.1
n.a. Serine/threonine protein kinase [Medicago truncatula] gi|357475991|ref|XP_003608281.1| chr4 5707741 5714818 -
2 domain predictions
2 GO terms
Lj4g3v0462390.1
n.a. PREDICTED: serine/threonine-protein kinase HT1-like [Cicer arietinum] gi|502142669|ref|XP_004505066.1| chr4 6802083 6806105 +
3 domain predictions
2 GO terms
Lj4g3v0484460.1
n.a. PREDICTED: serine/threonine-protein kinase-like protein ACR4-like [Glycine max] gi|356548662|ref|XP_003542719.1| chr4 7731545 7733087 -
2 domain predictions
2 GO terms
Lj4g3v0684110.1
n.a. PREDICTED: dual specificity protein kinase pyk1-like [Glycine max] gi|356521649|ref|XP_003529466.1| chr4 11343233 11350625 +
3 domain predictions
2 GO terms
Lj4g3v0912430.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490576|dbj|BAI79275.1| chr4 13596272 13598047 +
2 domain predictions
2 GO terms
Lj4g3v0912440.1
n.a. n.a. chr4 13596317 13598047 +
2 domain predictions
2 GO terms
Lj4g3v0938850.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK4-like isoform X3 [Cicer arietinum] gi|502153183|ref|XP_004509247.1| chr4 13866589 13870643 +
2 domain predictions
2 GO terms
Lj4g3v1089140.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 3-like [Glycine max] gi|356567656|ref|XP_003552033.1| chr4 15790307 15794848 +
2 domain predictions
2 GO terms
Lj4g3v1313820.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930-like [Glycine max] gi|356514131|ref|XP_003525760.1| chr4 19191299 19195034 -
2 domain predictions
2 GO terms
Lj4g3v1345800.1
n.a. PREDICTED: PTI1-like tyrosine-protein kinase 3-like isoform X1 [Cicer arietinum] gi|502121621|ref|XP_004497390.1| chr4 21124862 21128398 -
2 domain predictions
2 GO terms
Lj4g3v1512510.1
n.a. PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max] gi|356513323|ref|XP_003525363.1| chr4 22796834 22801189 -
3 domain predictions
2 GO terms
Lj4g3v1514720.1
n.a. PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max] gi|356508671|ref|XP_003523078.1| chr4 22858855 22863289 +
3 domain predictions
2 GO terms
Lj4g3v1628940.1
n.a. PREDICTED: protein kinase 2B, chloroplastic-like [Glycine max] gi|356513536|ref|XP_003525469.1| chr4 23889572 23890170 -
2 domain predictions
2 GO terms
Lj4g3v1880230.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Cicer arietinum] gi|502151557|ref|XP_004508499.1| chr4 25860390 25863203 -
2 domain predictions
2 GO terms
Lj4g3v1893210.1
n.a. PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3-like [Cicer arietinum] gi|502151452|ref|XP_004508448.1| chr4 26869926 26874392 +
2 domain predictions
2 GO terms
Lj4g3v1983460.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Glycine max] gi|356562577|ref|XP_003549546.1| chr4 27587854 27591888 +
2 domain predictions
2 GO terms
Lj4g3v2046100.1
n.a. Receptor-like kinase [Medicago truncatula] gi|357479817|ref|XP_003610194.1| chr4 28372391 28373722 +
2 domain predictions
2 GO terms
Lj4g3v2046110.1
n.a. PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Glycine max] gi|356550768|ref|XP_003543756.1| chr4 28375672 28387270 +
2 domain predictions
2 GO terms
Lj4g3v2080380.1
n.a. Protein kinase-like protein [Medicago truncatula] gi|357479749|ref|XP_003610160.1| chr4 28585196 28592820 -
3 domain predictions
2 GO terms
Lj4g3v2120390.1
n.a. PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Cicer arietinum] gi|502150258|ref|XP_004507866.1| chr4 28990071 28994624 +
2 domain predictions
2 GO terms
Lj4g3v2120420.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300-like [Glycine max] gi|356532654|ref|XP_003534886.1| chr4 29008751 29009994 -
2 domain predictions
2 GO terms
Lj4g3v2140100.1
n.a. PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like [Glycine max] gi|356550716|ref|XP_003543730.1| chr4 29607875 29609315 -
2 domain predictions
2 GO terms
Lj4g3v2140260.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357479449|ref|XP_003610010.1| chr4 29671901 29675381 -
2 domain predictions
2 GO terms
Lj4g3v2141380.2
n.a. PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Glycine max] gi|356558353|ref|XP_003547471.1| chr4 29749513 29761281 -
2 domain predictions
2 GO terms
Lj4g3v2172820.1
n.a. PREDICTED: U-box domain-containing protein 34-like [Glycine max] gi|356564780|ref|XP_003550626.1| chr4 29953373 29959994 +
2 domain predictions
2 GO terms
Lj4g3v2172820.2
n.a. PREDICTED: U-box domain-containing protein 34-like [Glycine max] gi|356564780|ref|XP_003550626.1| chr4 29953373 29959994 +
2 domain predictions
2 GO terms
Lj4g3v2213630.1
n.a. kinase-like protein [Glycine max] gi|351734456|ref|NP_001238581.1| chr4 30318132 30321250 +
2 domain predictions
2 GO terms
Lj4g3v2215090.1
n.a. S-locus receptor kinase (kinase domain) [Brassica rapa] gi|158853082|dbj|BAF91393.1| chr4 30524046 30524795 +
2 domain predictions
2 GO terms
Lj4g3v2249090.1
n.a. Pti1 kinase-like protein [Glycine max] gi|351727899|ref|NP_001235129.1| chr4 31010465 31014613 -
2 domain predictions
2 GO terms
Lj4g3v2265070.1
n.a. PREDICTED: serine/threonine-protein kinase EDR1-like [Cicer arietinum] gi|502080374|ref|XP_004486543.1| chr4 31451123 31457031 +
3 domain predictions
2 GO terms
Lj4g3v2412600.1
n.a. PREDICTED: probable serine/threonine-protein kinase At1g18390-like [Cicer arietinum] gi|502141658|ref|XP_004504581.1| chr4 33492878 33496712 -
2 domain predictions
2 GO terms
Lj4g3v2432690.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Glycine max] gi|356528198|ref|XP_003532692.1| chr4 33529830 33532881 -
2 domain predictions
2 GO terms
Lj4g3v2432690.2
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Glycine max] gi|356528198|ref|XP_003532692.1| chr4 33529830 33530487 -
2 domain predictions
2 GO terms
Lj4g3v2578250.1
n.a. Rhg4-like receptor kinase II [Glycine max] gi|90655934|gb|ABD96566.1| chr4 34603303 34607390 +
2 domain predictions
2 GO terms
Lj4g3v2604750.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Cicer arietinum] gi|502140673|ref|XP_004504296.1| chr4 35348135 35354046 +
2 domain predictions
2 GO terms
Lj4g3v2604750.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Cicer arietinum] gi|502140673|ref|XP_004504296.1| chr4 35350341 35354046 +
2 domain predictions
2 GO terms
Lj4g3v2604790.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Glycine max] gi|356510976|ref|XP_003524208.1| chr4 35375811 35378844 +
2 domain predictions
2 GO terms