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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003959
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We have found 436 results. Now displaying 9 of 9 with 50 rows per page. This search has taken 5.589s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0124500.3
n.a. 26S protease regulatory subunit; TAIR: AT4G29040.1 regulatory particle AAA-ATPase 2A; Swiss-Prot: sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A; TrEMBL-Plants: tr|A0A0R4J302|A0A0R4J302_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0124500 LjG1.1_chr5 27009326 27014211 +
2 domain predictions
1 GO term
LotjaGi5g1v0195500.1
n.a. ATP-dependent Clp protease ATP-binding subunit ClpX; TAIR: AT5G53350.1 CLP protease regulatory subunit X; Swiss-Prot: sp|Q9FK07|CLPX1_ARATH CLP protease regulatory subunit CLPX1, mitochondrial; TrEMBL-Plants: tr|A0A1J7G8K0|A0A1J7G8K0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0195500 LjG1.1_chr5 49091929 49105622 -
2 domain predictions
1 GO term
LotjaGi5g1v0210100.1
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G04340.1 FtsH extracellular protease family; Swiss-Prot: sp|F4J3N2|FTSI5_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic; TrEMBL-Plants: tr|A0A1J7HMB9|A0A1J7HMB9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0210100 LjG1.1_chr5 51354810 51375061 +
2 domain predictions
1 GO term
LotjaGi5g1v0229900.1
n.a. Lon protease homolog; TAIR: AT5G26860.1 lon protease 1; Swiss-Prot: sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial; TrEMBL-Plants: tr|A0A0S3SQJ4|A0A0S3SQJ4_PHAAN Lon protease homolog, mitochondrial; Found in the gene: LotjaGi5g1v0229900 LjG1.1_chr5 53721943 53734796 -
2 domain predictions
1 GO term
LotjaGi5g1v0229900.2
n.a. Lon protease homolog; TAIR: AT5G26860.1 lon protease 1; Swiss-Prot: sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial; TrEMBL-Plants: tr|A0A0S3SQJ4|A0A0S3SQJ4_PHAAN Lon protease homolog, mitochondrial; Found in the gene: LotjaGi5g1v0229900 LjG1.1_chr5 53722508 53734605 -
2 domain predictions
1 GO term
LotjaGi5g1v0229900.3
n.a. Lon protease homolog; TAIR: AT5G26860.1 lon protease 1; Swiss-Prot: sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial; TrEMBL-Plants: tr|A0A0S3SQJ4|A0A0S3SQJ4_PHAAN Lon protease homolog, mitochondrial; Found in the gene: LotjaGi5g1v0229900 LjG1.1_chr5 53723015 53733659 -
2 domain predictions
1 GO term
LotjaGi5g1v0229900.4
n.a. Lon protease homolog; TAIR: AT5G26860.1 lon protease 1; Swiss-Prot: sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial; TrEMBL-Plants: tr|A0A0S3SQJ4|A0A0S3SQJ4_PHAAN Lon protease homolog, mitochondrial; Found in the gene: LotjaGi5g1v0229900 LjG1.1_chr5 53723079 53733396 -
2 domain predictions
1 GO term
LotjaGi5g1v0229900.5
n.a. Lon protease homolog; TAIR: AT5G26860.1 lon protease 1; Swiss-Prot: sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial; TrEMBL-Plants: tr|A0A0S3SQJ4|A0A0S3SQJ4_PHAAN Lon protease homolog, mitochondrial; Found in the gene: LotjaGi5g1v0229900 LjG1.1_chr5 53723088 53734409 -
2 domain predictions
1 GO term
LotjaGi5g1v0229900.6
n.a. Lon protease homolog; TAIR: AT5G26860.1 lon protease 1; Swiss-Prot: sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial; TrEMBL-Plants: tr|A0A1J7FSE1|A0A1J7FSE1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0229900 LjG1.1_chr5 53725230 53730471 -
2 domain predictions
1 GO term
LotjaGi5g1v0251600.1
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q60QD1|FIGL1_CAEBR Fidgetin-like protein 1; TrEMBL-Plants: tr|K7K8K0|K7K8K0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251600 LjG1.1_chr5 55993936 56005432 -
2 domain predictions
1 GO term
LotjaGi5g1v0251700.1
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|F6QV99|ATAD1_BOVIN ATPase family AAA domain-containing protein 1; TrEMBL-Plants: tr|A0A0L9VI79|A0A0L9VI79_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251700 LjG1.1_chr5 56007622 56024443 -
2 domain predictions
1 GO term
LotjaGi5g1v0333300.1
n.a. Origin recognition complex subunit 4; TAIR: AT2G01120.1 origin recognition complex subunit 4; Swiss-Prot: sp|Q6EWX1|ORC4_ARATH Origin of replication complex subunit 4; TrEMBL-Plants: tr|V7BEU0|V7BEU0_PHAVU Origin recognition complex subunit 4; Found in the gene: LotjaGi5g1v0333300 LjG1.1_chr5 65021774 65026034 +
2 domain predictions
1 GO term
LotjaGi5g1v0364600.1
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT2G18193.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8GW96|AATP3_ARATH AAA-ATPase At2g18193; TrEMBL-Plants: tr|I1J8R6|I1J8R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0364600 LjG1.1_chr5 67904888 67914200 +
2 domain predictions
1 GO term
LotjaGi6g1v0015100.1
n.a. Chromosome transmission fidelity factor, putative; TAIR: AT1G04730.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q6NU40|CTF18_XENLA Chromosome transmission fidelity protein 18 homolog; TrEMBL-Plants: tr|K7LIZ1|K7LIZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0015100 LjG1.1_chr6 2702088 2722798 +
2 domain predictions
1 GO term
LotjaGi6g1v0045000.1
n.a. 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A0R4J4L8|A0A0R4J4L8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0045000 LjG1.1_chr6 8444311 8449044 -
2 domain predictions
1 GO term
LotjaGi6g1v0045000.3
n.a. 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A0R4J4L8|A0A0R4J4L8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0045000 LjG1.1_chr6 8444916 8448529 -
2 domain predictions
1 GO term
LotjaGi6g1v0045000.4
n.a. 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A0R4J4L8|A0A0R4J4L8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0045000 LjG1.1_chr6 8444916 8448529 -
2 domain predictions
1 GO term
LotjaGi6g1v0045000.5
n.a. 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A151U9T4|A0A151U9T4_CAJCA 26S protease regulatory subunit 6B isogeny; Found in the gene: LotjaGi6g1v0045000 LjG1.1_chr6 8446073 8448529 -
2 domain predictions
1 GO term
LotjaGi6g1v0063500.1
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RKS8|A0A0S3RKS8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500 LjG1.1_chr6 11727085 11732810 -
2 domain predictions
1 GO term
LotjaGi6g1v0063500.2
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RKS8|A0A0S3RKS8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500 LjG1.1_chr6 11727134 11732810 -
2 domain predictions
1 GO term
LotjaGi6g1v0063500.3
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7G550|A0A1J7G550_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500 LjG1.1_chr6 11728248 11730931 -
2 domain predictions
1 GO term
LotjaGi6g1v0063500.4
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7G550|A0A1J7G550_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500 LjG1.1_chr6 11728337 11730931 -
2 domain predictions
1 GO term
LotjaGi6g1v0063500.5
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7G550|A0A1J7G550_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500 LjG1.1_chr6 11728337 11731162 -
2 domain predictions
1 GO term
LotjaGi6g1v0063500.6
n.a. Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7G550|A0A1J7G550_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500 LjG1.1_chr6 11728454 11730925 -
2 domain predictions
1 GO term
LotjaGi6g1v0066700.1
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G01610.1 cell division cycle 48C; Swiss-Prot: sp|Q9SS94|CD48C_ARATH Cell division control protein 48 homolog C; TrEMBL-Plants: tr|A0A151TYW4|A0A151TYW4_CAJCA Cell division control protein 48 isogeny C; Found in the gene: LotjaGi6g1v0066700 LjG1.1_chr6 12666397 12671155 -
2 domain predictions
1 GO term
LotjaGi6g1v0075900.1
n.a. Chaperone ClpB; TAIR: AT2G29970.1 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O80875|SMXL7_ARATH Protein SMAX1-LIKE 7; TrEMBL-Plants: tr|I1LMS2|I1LMS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0075900 LjG1.1_chr6 14418017 14423969 +
2 domain predictions
1 GO term
LotjaGi6g1v0131200.1
n.a. Chaperone protein clpB; TAIR: AT2G29970.1 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O80875|SMXL7_ARATH Protein SMAX1-LIKE 7; TrEMBL-Plants: tr|I1MZZ3|I1MZZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0131200 LjG1.1_chr6 37258890 37265749 -
2 domain predictions
1 GO term
LotjaGi6g1v0132900.1
n.a. ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT5G58870.1 FTSH protease 9; Swiss-Prot: sp|Q9FIM2|FTSH9_ARATH ATP-dependent zinc metalloprotease FTSH 9, chloroplastic; TrEMBL-Plants: tr|A0A068FWX3|A0A068FWX3_CICAR Metalloprotease; Found in the gene: LotjaGi6g1v0132900 LjG1.1_chr6 38207756 38217001 +
2 domain predictions
1 GO term
LotjaGi6g1v0242400.10
n.a. ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT2G30950.4 FtsH extracellular protease family; Swiss-Prot: sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; TrEMBL-Plants: tr|A0A0S3RI72|A0A0S3RI72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0242400 LjG1.1_chr6 55464067 55466938 -
2 domain predictions
1 GO term
LotjaGi6g1v0242400.9
n.a. ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT2G30950.4 FtsH extracellular protease family; Swiss-Prot: sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; TrEMBL-Plants: tr|A0A0S3RI72|A0A0S3RI72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0242400 LjG1.1_chr6 55463877 55466799 -
2 domain predictions
1 GO term
LotjaGi6g1v0253400.1
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT2G18193.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8GW96|AATP3_ARATH AAA-ATPase At2g18193; TrEMBL-Plants: tr|I1LHW4|I1LHW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0253400 LjG1.1_chr6 56559284 56565461 -
2 domain predictions
1 GO term
LotjaGi6g1v0253400.2
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT2G18193.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8GW96|AATP3_ARATH AAA-ATPase At2g18193; TrEMBL-Plants: tr|I1LHW4|I1LHW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0253400 LjG1.1_chr6 56559284 56567897 -
2 domain predictions
1 GO term
LotjaGi6g1v0253400.3
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT2G18193.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8GW96|AATP3_ARATH AAA-ATPase At2g18193; TrEMBL-Plants: tr|I1LHW4|I1LHW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0253400 LjG1.1_chr6 56559463 56567897 -
2 domain predictions
1 GO term
LotjaGi6g1v0289600.1
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT4G04180.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5AWS6|CDC48_EMENI Cell division control protein 48; TrEMBL-Plants: tr|V7BRK8|V7BRK8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0289600 LjG1.1_chr6 60686865 60693434 +
2 domain predictions
1 GO term
LotjaGi6g1v0289600.2
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT4G04180.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5AWS6|CDC48_EMENI Cell division control protein 48; TrEMBL-Plants: tr|V7BRK8|V7BRK8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0289600 LjG1.1_chr6 60686897 60693057 +
2 domain predictions
1 GO term
LotjaGi6g1v0289600.3
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT4G04180.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5AWS6|CDC48_EMENI Cell division control protein 48; TrEMBL-Plants: tr|V7BRK8|V7BRK8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0289600 LjG1.1_chr6 60686958 60692718 +
2 domain predictions
1 GO term