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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006595
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We have found 86 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 5.543s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi3g1v0353700.6
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|I1KVH4|I1KVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 LjG1.1_chr3 73448585 73456064 +
3 domain predictions
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LotjaGi3g1v0353700.7
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|I1KVH4|I1KVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 LjG1.1_chr3 73448585 73456064 +
3 domain predictions
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LotjaGi3g1v0353700.8
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|A0A0R0J9B8|A0A0R0J9B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 LjG1.1_chr3 73448585 73456064 +
3 domain predictions
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LotjaGi3g1v0556900.1
n.a. Ran-binding protein 10; TAIR: AT1G35470.2 SPla/RYanodine receptor (SPRY) domain-containing protein; Swiss-Prot: sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10; TrEMBL-Plants: tr|I1LNN2|I1LNN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556900 LjG1.1_chr3 97478257 97488320 -
3 domain predictions
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LotjaGi4g1v0052000.1
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|A0A151T7P0|A0A151T7P0_CAJCA UPF0559 protein; Found in the gene: LotjaGi4g1v0052000 LjG1.1_chr4 6265341 6269423 -
3 domain predictions
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LotjaGi4g1v0052000.2
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3T4M7|I3T4M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0052000 LjG1.1_chr4 6265341 6269423 -
3 domain predictions
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LotjaGi4g1v0052000.3
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3T4M7|I3T4M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0052000 LjG1.1_chr4 6265341 6275311 -
3 domain predictions
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LotjaGi4g1v0052000.4
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|A0A1J7GYJ9|A0A1J7GYJ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0052000 LjG1.1_chr4 6271192 6275310 -
3 domain predictions
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LotjaGi4g1v0106200.2
n.a. Ran-binding protein in the microtubule-organising centre protein; TAIR: AT5G66810.4 Ran-binding protein in the microtubule-organising centre protein; Swiss-Prot: sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|K7MM68|K7MM68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0106200 LjG1.1_chr4 14766647 14777006 +
3 domain predictions
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LotjaGi4g1v0171600_LC.1
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q9H871|RMD5A_HUMAN Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151SYZ5|A0A151SYZ5_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi4g1v0171600_LC LjG1.1_chr4 33892623 33893783 +
3 domain predictions
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LotjaGi4g1v0274000.1
n.a. Topless-related 1-like protein; TAIR: AT3G15880.1 WUS-interacting protein 2; Swiss-Prot: sp|Q27GK7|TPR4_ARATH Topless-related protein 4; TrEMBL-Plants: tr|K7M027|K7M027_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0274000 LjG1.1_chr4 64312696 64323331 -
3 domain predictions
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LotjaGi4g1v0337500.1
n.a. Topless-related 1-like protein; TAIR: AT3G16830.1 TOPLESS-related 2; Swiss-Prot: sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2; TrEMBL-Plants: tr|G7JMQ4|G7JMQ4_MEDTR Topless-like protein; Found in the gene: LotjaGi4g1v0337500 LjG1.1_chr4 71793796 71803026 -
3 domain predictions
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LotjaGi4g1v0337500.2
n.a. Topless-related 1-like protein; TAIR: AT3G16830.1 TOPLESS-related 2; Swiss-Prot: sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2; TrEMBL-Plants: tr|G7JMQ4|G7JMQ4_MEDTR Topless-like protein; Found in the gene: LotjaGi4g1v0337500 LjG1.1_chr4 71794237 71802926 -
3 domain predictions
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LotjaGi5g1v0011300.1
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G06060.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SCR9|I3SCR9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0011300 LjG1.1_chr5 2579294 2589068 -
3 domain predictions
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LotjaGi5g1v0011300.2
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G06060.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I1K7N4|I1K7N4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0011300 LjG1.1_chr5 2580308 2587444 -
3 domain predictions
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LotjaGi5g1v0151700.1
n.a. WD-repeat protein, putative; TAIR: AT5G43920.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q5SP67|WDR26_DANRE WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A072VM11|A0A072VM11_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0151700 LjG1.1_chr5 39607381 39616059 +
3 domain predictions
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LotjaGi5g1v0151700.2
n.a. WD-repeat protein, putative; TAIR: AT5G43920.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q5SP67|WDR26_DANRE WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A072VM11|A0A072VM11_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0151700 LjG1.1_chr5 39607763 39615423 +
3 domain predictions
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LotjaGi5g1v0151700.4
n.a. WD-repeat protein, putative; TAIR: AT5G43920.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q5SP67|WDR26_DANRE WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A072VM11|A0A072VM11_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0151700 LjG1.1_chr5 39607763 39615667 +
3 domain predictions
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LotjaGi5g1v0227200.1
n.a. WD-repeat protein, putative; TAIR: AT5G27030.1 TOPLESS-related 3; Swiss-Prot: sp|Q84JM4|TPR3_ARATH Topless-related protein 3; TrEMBL-Plants: tr|Q2HW32|Q2HW32_MEDTR Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; Found in the gene: LotjaGi5g1v0227200 LjG1.1_chr5 53450469 53459976 +
3 domain predictions
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LotjaGi5g1v0227300.1
n.a. WD-repeat protein, putative; TAIR: AT5G27030.1 TOPLESS-related 3; Swiss-Prot: sp|Q84JM4|TPR3_ARATH Topless-related protein 3; TrEMBL-Plants: tr|Q2HW32|Q2HW32_MEDTR Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; Found in the gene: LotjaGi5g1v0227300 LjG1.1_chr5 53465139 53475706 +
3 domain predictions
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LotjaGi5g1v0227300.2
n.a. WD-repeat protein, putative; TAIR: AT5G27030.1 TOPLESS-related 3; Swiss-Prot: sp|Q84JM4|TPR3_ARATH Topless-related protein 3; TrEMBL-Plants: tr|Q2HW32|Q2HW32_MEDTR Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; Found in the gene: LotjaGi5g1v0227300 LjG1.1_chr5 53466518 53476379 +
3 domain predictions
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LotjaGi5g1v0227300.3
n.a. WD-repeat protein, putative; TAIR: AT5G27030.1 TOPLESS-related 3; Swiss-Prot: sp|Q84JM4|TPR3_ARATH Topless-related protein 3; TrEMBL-Plants: tr|Q2HW32|Q2HW32_MEDTR Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; Found in the gene: LotjaGi5g1v0227300 LjG1.1_chr5 53466863 53475706 +
3 domain predictions
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LotjaGi5g1v0360500.1
n.a. Macrophage erythroblast attacher; TAIR: AT3G55070.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher; TrEMBL-Plants: tr|A0A0R0I117|A0A0R0I117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0360500 LjG1.1_chr5 67477175 67481936 -
3 domain predictions
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LotjaGi5g1v0360500.2
n.a. Macrophage erythroblast attacher; TAIR: AT3G55070.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher; TrEMBL-Plants: tr|A0A0R0I117|A0A0R0I117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0360500 LjG1.1_chr5 67477444 67481644 -
3 domain predictions
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LotjaGi5g1v0360500.3
n.a. Macrophage erythroblast attacher; TAIR: AT3G55070.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher; TrEMBL-Plants: tr|A0A0R0I117|A0A0R0I117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0360500 LjG1.1_chr5 67477444 67481680 -
3 domain predictions
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LotjaGi6g1v0190000.1
n.a. WD40 repeat-containing protein; TAIR: AT1G73720.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q8W117|SMU1_ARATH Suppressor of mec-8 and unc-52 protein homolog 1; TrEMBL-Plants: tr|A0A151R5C7|A0A151R5C7_CAJCA WD40 repeat-containing protein SMU1; Found in the gene: LotjaGi6g1v0190000 LjG1.1_chr6 48546335 48556451 +
3 domain predictions
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LotjaGi6g1v0190000.2
n.a. WD40 repeat-containing protein; TAIR: AT1G73720.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q8W117|SMU1_ARATH Suppressor of mec-8 and unc-52 protein homolog 1; TrEMBL-Plants: tr|A0A151R5C7|A0A151R5C7_CAJCA WD40 repeat-containing protein SMU1; Found in the gene: LotjaGi6g1v0190000 LjG1.1_chr6 48546457 48555985 +
3 domain predictions
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LotjaGi6g1v0190000.3
n.a. WD40 repeat-containing protein; TAIR: AT1G73720.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q8W117|SMU1_ARATH Suppressor of mec-8 and unc-52 protein homolog 1; TrEMBL-Plants: tr|A0A151R5C7|A0A151R5C7_CAJCA WD40 repeat-containing protein SMU1; Found in the gene: LotjaGi6g1v0190000 LjG1.1_chr6 48546457 48555985 +
3 domain predictions
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LotjaGi6g1v0253600.1
n.a. WD-repeat protein, putative; TAIR: AT3G16830.1 TOPLESS-related 2; Swiss-Prot: sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2; TrEMBL-Plants: tr|A0A1J7H667|A0A1J7H667_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0253600 LjG1.1_chr6 56575819 56586137 +
3 domain predictions
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LotjaGi6g1v0336300.1
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65074048 65079361 +
3 domain predictions
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LotjaGi6g1v0336300.2
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65074814 65077612 +
3 domain predictions
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LotjaGi6g1v0336300.3
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65075013 65077612 +
3 domain predictions
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LotjaGi6g1v0336300.4
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65075057 65077612 +
3 domain predictions
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LotjaGi6g1v0336300.5
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65075311 65077612 +
3 domain predictions
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LotjaGi6g1v0346500.1
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 LjG1.1_chr6 65892461 65899032 +
3 domain predictions
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LotjaGi6g1v0346500.2
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 LjG1.1_chr6 65896279 65897433 +
3 domain predictions
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