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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 891 results. Now displaying 5 of 18 with 50 rows per page. This search has taken 6.271s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1734820.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357483491|ref|XP_003612032.1| chr2 26842879 26851044 -
2 domain predictions
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Lj2g3v1828360.2
n.a. PREDICTED: V-type proton ATPase subunit H-like isoform X1 [Cicer arietinum] gi|502153136|ref|XP_004509230.1| chr2 27406267 27409734 -
2 domain predictions
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Lj2g3v1968230.1
n.a. Condensin-2 complex subunit G2 [Medicago truncatula] gi|357482605|ref|XP_003611589.1| chr2 28619331 28626838 +
2 domain predictions
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Lj2g3v1980800.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357482529|ref|XP_003611551.1| chr2 28801745 28804717 +
2 domain predictions
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Lj2g3v2002780.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 3-like [Cicer arietinum] gi|502160109|ref|XP_004511636.1| chr2 30461113 30470358 -
2 domain predictions
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Lj2g3v2124900.1
n.a. PREDICTED: exportin-1-like isoform 2 [Glycine max] gi|356538753|ref|XP_003537865.1| chr2 32061176 32071009 -
2 domain predictions
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Lj2g3v2209750.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356553040|ref|XP_003544866.1| chr2 32896520 32901452 +
2 domain predictions
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Lj2g3v2365890.1
n.a. PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max] gi|356499002|ref|XP_003518333.1| chr2 33986824 34011952 -
2 domain predictions
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Lj2g3v2365890.3
n.a. PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max] gi|356499002|ref|XP_003518333.1| chr2 33986824 34011952 -
2 domain predictions
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Lj2g3v2412460.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356499010|ref|XP_003518337.1| chr2 34236718 34242135 -
2 domain predictions
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Lj2g3v2522100.1
n.a. PREDICTED: armadillo repeat-containing protein 7-like isoform X1 [Cicer arietinum] gi|502142517|ref|XP_004504996.1| chr2 34937809 34940963 +
2 domain predictions
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Lj2g3v2522100.2
n.a. PREDICTED: armadillo repeat-containing protein 7-like isoform X1 [Cicer arietinum] gi|502142517|ref|XP_004504996.1| chr2 34937809 34940963 +
2 domain predictions
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Lj2g3v2522130.1
n.a. PREDICTED: micronuclear linker histone polyprotein-like [Cicer arietinum] gi|502133501|ref|XP_004501787.1| chr2 34954122 34956609 -
2 domain predictions
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Lj2g3v2560030.1
n.a. Senescence-associated family protein [Theobroma cacao] gi|508712025|gb|EOY03922.1| chr2 35283433 35292544 -
2 domain predictions
 –
Lj2g3v2560030.3
n.a. Senescence-associated family protein [Theobroma cacao] gi|508712025|gb|EOY03922.1| chr2 35283433 35290274 -
2 domain predictions
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Lj2g3v2587680.1
n.a. PREDICTED: AP3-complex subunit beta-A-like [Glycine max] gi|356501063|ref|XP_003519348.1| chr2 35465795 35476887 -
2 domain predictions
 –
Lj2g3v2587680.2
n.a. PREDICTED: AP3-complex subunit beta-A-like [Glycine max] gi|356501063|ref|XP_003519348.1| chr2 35465795 35476887 -
2 domain predictions
 –
Lj2g3v2794440.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Glycine max] gi|356499213|ref|XP_003518436.1| chr2 36759411 36762100 +
2 domain predictions
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Lj2g3v3018600.1
n.a. PREDICTED: LOW QUALITY PROTEIN: proteasome-associated protein ECM29 homolog [Cicer arietinum] gi|502098370|ref|XP_004491219.1| chr2 38906348 38931149 +
2 domain predictions
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Lj2g3v3018600.2
n.a. PREDICTED: LOW QUALITY PROTEIN: proteasome-associated protein ECM29 homolog [Cicer arietinum] gi|502098370|ref|XP_004491219.1| chr2 38909271 38931149 +
2 domain predictions
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Lj2g3v3336120.1
n.a. PREDICTED: armadillo repeat-containing protein 8-like isoform X1 [Cicer arietinum] gi|502099759|ref|XP_004491554.1| chr2 42243670 42251694 -
2 domain predictions
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Lj2g3v3413430.1
n.a. PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform 1 [Glycine max] gi|356501773|ref|XP_003519698.1| chr2 43205041 43225538 +
2 domain predictions
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Lj2g3v3413430.2
n.a. PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform 1 [Glycine max] gi|356501773|ref|XP_003519698.1| chr2 43212196 43246571 +
2 domain predictions
 –
Lj3g3v0201940.1
n.a. PREDICTED: U-box domain-containing protein 45-like isoform X1 [Cicer arietinum] gi|502135372|ref|XP_004502310.1| chr3 1293390 1297583 +
2 domain predictions
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Lj3g3v0429130.1
n.a. 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi|357516527|ref|XP_003628552.1| chr3 4219635 4238118 +
2 domain predictions
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Lj3g3v0461980.1
n.a. PREDICTED: SCY1-like protein 2-like [Glycine max] gi|356544216|ref|XP_003540550.1| chr3 5023729 5032650 -
2 domain predictions
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Lj3g3v0563910.1
n.a. PREDICTED: LOW QUALITY PROTEIN: HEAT repeat-containing protein 5B-like [Cicer arietinum] gi|502090095|ref|XP_004489119.1| chr3 6247188 6256945 +
2 domain predictions
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Lj3g3v1075000.1
n.a. PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max] gi|356543472|ref|XP_003540184.1| chr3 14475646 14484728 +
2 domain predictions
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Lj3g3v1075000.2
n.a. PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max] gi|356543472|ref|XP_003540184.1| chr3 14475646 14484728 +
2 domain predictions
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Lj3g3v1126810.1
n.a. ARM repeat superfamily protein [Arabidopsis thaliana] gi|334187850|ref|NP_001190369.1| chr3 15104419 15111055 +
2 domain predictions
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Lj3g3v1131280.1
n.a. PREDICTED: AP-2 complex subunit alpha-1-like [Cicer arietinum] gi|502083708|ref|XP_004487540.1| chr3 15256795 15267453 +
2 domain predictions
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Lj3g3v1131280.2
n.a. PREDICTED: AP-2 complex subunit alpha-2-like [Glycine max] gi|356543534|ref|XP_003540215.1| chr3 15262874 15267453 +
2 domain predictions
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Lj3g3v1282320.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Glycine max] gi|356543678|ref|XP_003540287.1| chr3 16390175 16392327 -
2 domain predictions
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Lj3g3v1421800.1
n.a. PREDICTED: U-box domain-containing protein 16-like [Cicer arietinum] gi|502146392|ref|XP_004506434.1| chr3 18405235 18407914 +
2 domain predictions
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Lj3g3v1421810.1
n.a. PREDICTED: U-box domain-containing protein 16-like [Cicer arietinum] gi|502146392|ref|XP_004506434.1| chr3 18405235 18407914 +
2 domain predictions
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Lj3g3v1759410.3
n.a. EFR3-like protein [Medicago truncatula] gi|357454465|ref|XP_003597513.1| chr3 22173974 22187093 -
2 domain predictions
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Lj3g3v1907650.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502158133|ref|XP_004511041.1| chr3 24556222 24558094 -
2 domain predictions
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Lj3g3v2054380.1
n.a. PREDICTED: coatomer subunit beta-1-like [Glycine max] gi|356521768|ref|XP_003529523.1| chr3 26358207 26359286 -
2 domain predictions
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Lj3g3v2054390.1
n.a. PREDICTED: coatomer subunit beta-1-like [Glycine max] gi|356521768|ref|XP_003529523.1| chr3 26362556 26368580 -
2 domain predictions
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Lj3g3v2095940.2
n.a. PREDICTED: protein MON2 homolog isoform 1 [Glycine max] gi|356535139|ref|XP_003536106.1| chr3 26619206 26643243 -
2 domain predictions
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Lj3g3v2401880.1
n.a. PREDICTED: proline-, glutamic acid- and leucine-rich protein 1-like [Cicer arietinum] gi|502157030|ref|XP_004510734.1| chr3 29826455 29830944 +
2 domain predictions
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Lj3g3v2455430.1
n.a. PREDICTED: exportin-2-like isoform 1 [Glycine max] gi|356560135|ref|XP_003548351.1| chr3 30329282 30334633 +
2 domain predictions
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Lj3g3v2575990.1
n.a. PREDICTED: CCAAT/enhancer-binding protein zeta-like [Cicer arietinum] gi|502156598|ref|XP_004510554.1| chr3 31472108 31480208 +
2 domain predictions
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Lj3g3v2733940.1
n.a. PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Cicer arietinum] gi|502157877|ref|XP_004510941.1| chr3 33581075 33594001 -
2 domain predictions
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Lj3g3v2938470.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Glycine max] gi|356544768|ref|XP_003540819.1| chr3 36636425 36637929 -
2 domain predictions
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Lj3g3v3189720.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502145080|ref|XP_004505870.1| chr3 39447089 39448669 -
2 domain predictions
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Lj3g3v3189730.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Glycine max] gi|356539016|ref|XP_003537996.1| chr3 39447514 39452228 -
2 domain predictions
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Lj3g3v3271540.1
n.a. PREDICTED: probable importin-7 homolog [Glycine max] gi|356536577|ref|XP_003536813.1| chr3 40211831 40212187 -
2 domain predictions
 –
Lj3g3v3312810.1
n.a. EFR3-like protein [Medicago truncatula] gi|357454465|ref|XP_003597513.1| chr3 40372343 40381256 -
2 domain predictions
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Lj3g3v3338600.1
n.a. PREDICTED: coatomer subunit gamma-2-like [Glycine max] gi|356538767|ref|XP_003537872.1| chr3 41056849 41064281 +
2 domain predictions
 –