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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029071
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We have found 320 results. Now displaying 4 of 7 with 50 rows per page. This search has taken 5.537s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0083800.2
n.a. UBX domain-containing protein; TAIR: AT3G27310.1 plant UBX domain-containing protein 1; Swiss-Prot: sp|Q9LK22|PUX1_ARATH Plant UBX domain-containing protein 1; TrEMBL-Plants: tr|I1N7K5|I1N7K5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0083800 LjG1.1_chr2 23221282 23228273 +
2 domain predictions
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LotjaGi2g1v0149400.1
n.a. BAG family molecular chaperone regulator-like protein; TAIR: AT5G52060.1 BCL-2-associated athanogene 1; Swiss-Prot: sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1; TrEMBL-Plants: tr|V7C4X6|V7C4X6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0149400 LjG1.1_chr2 53744214 53752876 +
2 domain predictions
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LotjaGi2g1v0207300_LC.1
n.a. Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0207300_LC LjG1.1_chr2 65135018 65142622 -
2 domain predictions
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LotjaGi2g1v0207300_LC.2
n.a. Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0207300_LC LjG1.1_chr2 65135018 65142622 -
2 domain predictions
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LotjaGi2g1v0207300_LC.3
n.a. Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0207300_LC LjG1.1_chr2 65135409 65142586 -
2 domain predictions
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LotjaGi2g1v0207300_LC.4
n.a. Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0207300_LC LjG1.1_chr2 65136028 65142628 -
2 domain predictions
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LotjaGi2g1v0207600_LC.1
n.a. Ubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0207600_LC LjG1.1_chr2 65187259 65188418 -
2 domain predictions
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LotjaGi2g1v0264200.1
n.a. Membrane-anchored ubiquitin-fold protein; TAIR: AT3G01050.1 membrane-anchored ubiquitin-fold protein 1 precursor; Swiss-Prot: sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1; TrEMBL-Plants: tr|A0A151SZZ4|A0A151SZZ4_CAJCA Membrane-anchored ubiquitin-fold protein 1; Found in the gene: LotjaGi2g1v0264200 LjG1.1_chr2 73358909 73362575 -
2 domain predictions
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LotjaGi2g1v0264200.2
n.a. Membrane-anchored ubiquitin-fold protein; TAIR: AT5G15460.1 membrane-anchored ubiquitin-fold protein 2; Swiss-Prot: sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2; TrEMBL-Plants: tr|A0A1J7GJF2|A0A1J7GJF2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0264200 LjG1.1_chr2 73359986 73361779 -
2 domain predictions
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LotjaGi2g1v0277900.1
n.a. RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A151RI27|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900 LjG1.1_chr2 74961554 74969384 +
2 domain predictions
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LotjaGi2g1v0321700.1
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 LjG1.1_chr2 79647585 79651234 -
2 domain predictions
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LotjaGi2g1v0321700.2
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 LjG1.1_chr2 79650360 79651086 -
2 domain predictions
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LotjaGi2g1v0344200.1
n.a. Transcription initiation factor tfiid subunit 1; TAIR: AT1G32750.1 HAC13 protein (HAC13); Swiss-Prot: sp|Q8LRK9|TAF1_ARATH Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|I1L578|I1L578_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344200 LjG1.1_chr2 82127040 82145619 +
2 domain predictions
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LotjaGi2g1v0344200.2
n.a. Transcription initiation factor tfiid subunit 1; TAIR: AT1G32750.1 HAC13 protein (HAC13); Swiss-Prot: sp|Q8LRK9|TAF1_ARATH Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|I1L578|I1L578_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344200 LjG1.1_chr2 82127040 82145619 +
2 domain predictions
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LotjaGi2g1v0344200.3
n.a. Transcription initiation factor tfiid subunit 1; TAIR: AT1G32750.1 HAC13 protein (HAC13); Swiss-Prot: sp|Q8LRK9|TAF1_ARATH Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|I1L578|I1L578_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344200 LjG1.1_chr2 82127736 82145084 +
2 domain predictions
 –
LotjaGi2g1v0344200.4
n.a. Transcription initiation factor tfiid subunit 1; TAIR: AT1G32750.1 HAC13 protein (HAC13); Swiss-Prot: sp|Q8LRK9|TAF1_ARATH Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|I1L578|I1L578_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344200 LjG1.1_chr2 82127736 82145084 +
2 domain predictions
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LotjaGi2g1v0344200.5
n.a. Transcription initiation factor tfiid subunit 1; TAIR: AT1G32750.1 HAC13 protein (HAC13); Swiss-Prot: sp|Q8LRK9|TAF1_ARATH Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|I1L578|I1L578_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344200 LjG1.1_chr2 82127736 82145084 +
2 domain predictions
 –
LotjaGi2g1v0344200.6
n.a. Transcription initiation factor tfiid subunit 1; TAIR: AT1G32750.1 HAC13 protein (HAC13); Swiss-Prot: sp|Q8LRK9|TAF1_ARATH Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|K7LF91|K7LF91_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344200 LjG1.1_chr2 82130620 82145084 +
2 domain predictions
 –
LotjaGi2g1v0344200.7
n.a. Transcription initiation factor tfiid subunit 1; TAIR: AT1G32750.1 HAC13 protein (HAC13); Swiss-Prot: sp|Q8LRK9|TAF1_ARATH Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|K7LF91|K7LF91_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344200 LjG1.1_chr2 82133009 82145084 +
2 domain predictions
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LotjaGi2g1v0355900.1
n.a. Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A151THR2|A0A151THR2_CAJCA Ubiquilin-1; Found in the gene: LotjaGi2g1v0355900 LjG1.1_chr2 83199158 83205368 -
2 domain predictions
 –
LotjaGi2g1v0374400.1
n.a. Telomere-binding family protein; TAIR: AT3G46590.1 TRF-like 1; Swiss-Prot: sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2; TrEMBL-Plants: tr|K7LPN4|K7LPN4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0374400 LjG1.1_chr2 87116211 87120946 +
2 domain predictions
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LotjaGi2g1v0431700.1
n.a. FAS-associated factor 2-B; TAIR: AT4G11740.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|F4JPR7|PUX8_ARATH Plant UBX domain-containing protein 8; TrEMBL-Plants: tr|I1K0C8|I1K0C8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0431700 LjG1.1_chr2 92868553 92874093 -
2 domain predictions
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LotjaGi2g1v0442900.1
n.a. Phosphatidylinositol 4-kinase gamma 4; TAIR: AT1G64460.1 phosphatidylinositol 4-kinase gamma-like protein; Swiss-Prot: sp|Q9SGW8|P4KG2_ARATH Phosphatidylinositol 4-kinase gamma 2; TrEMBL-Plants: tr|I1JAE9|I1JAE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0442900 LjG1.1_chr2 93865785 93869574 -
2 domain predictions
 –
LotjaGi2g1v0442900.2
n.a. Phosphatidylinositol 4-kinase gamma 4; TAIR: AT1G64460.1 phosphatidylinositol 4-kinase gamma-like protein; Swiss-Prot: sp|Q9SGW8|P4KG2_ARATH Phosphatidylinositol 4-kinase gamma 2; TrEMBL-Plants: tr|I1JAE9|I1JAE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0442900 LjG1.1_chr2 93865905 93869014 -
2 domain predictions
 –
LotjaGi2g1v0458100_LC.1
n.a. Ubiquitin, putative; TAIR: AT4G05230.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|A4QND0|UBL4A_XENTR Ubiquitin-like protein 4A; TrEMBL-Plants: tr|A0A1J7HJ92|A0A1J7HJ92_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0458100_LC LjG1.1_chr2 95177024 95177781 -
2 domain predictions
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LotjaGi3g1v0002300.1
n.a. Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L33|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr|A0A0S3SF25|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300 LjG1.1_chr3 333342 338615 +
2 domain predictions
 –
LotjaGi3g1v0135400.1
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17346413 17349877 -
2 domain predictions
 –
LotjaGi3g1v0135400.2
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347791 17349056 -
2 domain predictions
 –
LotjaGi3g1v0135400.3
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347791 17349356 -
2 domain predictions
 –
LotjaGi3g1v0135400.4
n.a. Polyubiquitin; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG84|UBI4P_NICSY Polyubiquitin; TrEMBL-Plants: tr|P93501|P93501_PHAVU Ubiquitin-like protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347795 17348828 -
2 domain predictions
 –
LotjaGi3g1v0135400.5
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A068UJB0|A0A068UJB0_COFCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349056 -
2 domain predictions
 –
LotjaGi3g1v0135400.6
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349082 -
2 domain predictions
 –
LotjaGi3g1v0135400.7
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349356 -
2 domain predictions
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LotjaGi3g1v0136900.1
n.a. Ubiquitin, putative; TAIR: AT1G31340.1 related to ubiquitin 1; Swiss-Prot: sp|P0C031|RUB2_ORYSJ Ubiquitin-NEDD8-like protein RUB2; TrEMBL-Plants: tr|C6SXX2|C6SXX2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0136900 LjG1.1_chr3 17513681 17518640 -
2 domain predictions
 –
LotjaGi3g1v0147900.1
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A0A9S1U9|A0A0A9S1U9_ARUDO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910002 19912564 -
2 domain predictions
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LotjaGi3g1v0147900.2
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910093 19911765 -
2 domain predictions
 –
LotjaGi3g1v0147900.3
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910191 19911529 -
2 domain predictions
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LotjaGi3g1v0147900.4
n.a. Polyubiquitin protein; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG84|UBI4P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YSM3|K3YSM3_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910230 19911553 -
2 domain predictions
 –
LotjaGi3g1v0147900.5
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910230 19911812 -
2 domain predictions
 –
LotjaGi3g1v0147900.6
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910230 19911845 -
2 domain predictions
 –
LotjaGi3g1v0147900.7
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910230 19911878 -
2 domain predictions
 –
LotjaGi3g1v0147900.8
n.a. Polyubiquitin protein; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A0A9S1U9|A0A0A9S1U9_ARUDO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910390 19911757 -
2 domain predictions
 –
LotjaGi3g1v0148400.1
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0148400 LjG1.1_chr3 19964704 19967563 -
2 domain predictions
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LotjaGi3g1v0148400.2
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0148400 LjG1.1_chr3 19965225 19966851 -
2 domain predictions
 –
LotjaGi3g1v0148400.3
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0148400 LjG1.1_chr3 19965225 19967151 -
2 domain predictions
 –
LotjaGi3g1v0148400.4
n.a. Polyubiquitin; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG84|UBI4P_NICSY Polyubiquitin; TrEMBL-Plants: tr|P93501|P93501_PHAVU Ubiquitin-like protein; Found in the gene: LotjaGi3g1v0148400 LjG1.1_chr3 19965436 19966395 -
2 domain predictions
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LotjaGi3g1v0148400.5
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A068UJB0|A0A068UJB0_COFCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0148400 LjG1.1_chr3 19965478 19966623 -
2 domain predictions
 –
LotjaGi3g1v0148400.6
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0148400 LjG1.1_chr3 19965478 19966998 -
2 domain predictions
 –
LotjaGi3g1v0148400.7
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0148400 LjG1.1_chr3 19965478 19967053 -
2 domain predictions
 –
LotjaGi3g1v0148400.8
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0148400 LjG1.1_chr3 19965478 19967151 -
2 domain predictions
 –