Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009072
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 323 results. Now displaying 4 of 7 with 50 rows per page. This search has taken 7.114s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0439900.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT1G21970.1 Histone superfamily protein; Swiss-Prot: sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9; TrEMBL-Plants: tr|I1NCV5|I1NCV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0439900 LjG1.1_chr2 93650365 93651025 +
3 domain predictions
1 GO term
LotjaGi3g1v0051800.3
n.a. Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0051800 LjG1.1_chr3 5430445 5432356 -
3 domain predictions
1 GO term
LotjaGi3g1v0080600.1
n.a. Nuclear factor Y subunit C; TAIR: AT5G63470.1 nuclear factor Y, subunit C4; Swiss-Prot: sp|A6BLW4|NFYC2_ORYSJ Nuclear transcription factor Y subunit C-2; TrEMBL-Plants: tr|A0A151RNI3|A0A151RNI3_CAJCA Nuclear transcription factor Y subunit C-1; Found in the gene: LotjaGi3g1v0080600 LjG1.1_chr3 8932870 8933883 -
3 domain predictions
1 GO term
LotjaGi3g1v0104200.1
n.a. Nuclear transcription factor Y subunit C8; TAIR: AT3G12480.1 nuclear factor Y, subunit C11; Swiss-Prot: sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor; TrEMBL-Plants: tr|I3SVE1|I3SVE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0104200 LjG1.1_chr3 12897913 12902086 +
3 domain predictions
1 GO term
LotjaGi3g1v0104200.2
n.a. Nuclear transcription factor Y subunit C8; TAIR: AT3G12480.1 nuclear factor Y, subunit C11; Swiss-Prot: sp|A0JPP1|NC2A_RAT Dr1-associated corepressor; TrEMBL-Plants: tr|I3SVE1|I3SVE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0104200 LjG1.1_chr3 12898000 12902661 +
3 domain predictions
1 GO term
LotjaGi3g1v0169600.1
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 LjG1.1_chr3 23117101 23142444 +
3 domain predictions
1 GO term
LotjaGi3g1v0169600.2
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 LjG1.1_chr3 23117296 23117733 +
3 domain predictions
1 GO term
LotjaGi3g1v0169600.3
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 LjG1.1_chr3 23141418 23141852 +
3 domain predictions
1 GO term
LotjaGi3g1v0169700.1
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|G7JTQ9|G7JTQ9_MEDTR Histone H2B; Found in the gene: LotjaGi3g1v0169700 LjG1.1_chr3 23128157 23128594 +
3 domain predictions
1 GO term
LotjaGi3g1v0233900.1
n.a. Histone H2A; TAIR: AT5G54640.1 Histone superfamily protein; Swiss-Prot: sp|Q9LD28|H2A6_ARATH Histone H2A.6; TrEMBL-Plants: tr|I1LUS3|I1LUS3_SOYBN Histone H2A; Found in the gene: LotjaGi3g1v0233900 LjG1.1_chr3 37025042 37026396 +
3 domain predictions
1 GO term
LotjaGi3g1v0233900.2
n.a. Histone H2A; TAIR: AT4G27230.1 histone H2A 2; Swiss-Prot: sp|O81826|H2A3_ARATH Probable histone H2A.3; TrEMBL-Plants: tr|T2DMX9|T2DMX9_PHAVU Histone H2A; Found in the gene: LotjaGi3g1v0233900 LjG1.1_chr3 37025235 37025817 +
3 domain predictions
1 GO term
LotjaGi3g1v0234200.1
n.a. Histone H2A; TAIR: AT1G51060.1 histone H2A 10; Swiss-Prot: sp|Q9C681|H2A1_ARATH Probable histone H2A.1; TrEMBL-Plants: tr|A0A1J7HRN0|A0A1J7HRN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0234200 LjG1.1_chr3 37102901 37104519 +
3 domain predictions
1 GO term
LotjaGi3g1v0248100.1
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi3g1v0248100 LjG1.1_chr3 41142370 41143970 -
3 domain predictions
1 GO term
LotjaGi3g1v0248100.2
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi3g1v0248100 LjG1.1_chr3 41142446 41143337 -
3 domain predictions
1 GO term
LotjaGi3g1v0248100.3
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|W5GCP8|W5GCP8_WHEAT Histone H3; Found in the gene: LotjaGi3g1v0248100 LjG1.1_chr3 41142624 41143337 -
3 domain predictions
1 GO term
LotjaGi3g1v0248100.4
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|V7CZU0|V7CZU0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0248100 LjG1.1_chr3 41142624 41143418 -
3 domain predictions
1 GO term
LotjaGi3g1v0277600.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600 LjG1.1_chr3 55104614 55105054 +
3 domain predictions
1 GO term
LotjaGi3g1v0277600.2
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600 LjG1.1_chr3 55104637 55105796 +
3 domain predictions
1 GO term
LotjaGi3g1v0277600.3
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600 LjG1.1_chr3 55104743 55105054 +
3 domain predictions
1 GO term
LotjaGi3g1v0277700.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|V7AJ33|V7AJ33_PHAVU Histone H4; Found in the gene: LotjaGi3g1v0277700 LjG1.1_chr3 55123675 55127871 +
3 domain predictions
1 GO term
LotjaGi3g1v0277700.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277700 LjG1.1_chr3 55123877 55124188 +
3 domain predictions
1 GO term
LotjaGi3g1v0277900.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900 LjG1.1_chr3 55135466 55136656 +
3 domain predictions
1 GO term
LotjaGi3g1v0277900.2
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900 LjG1.1_chr3 55135788 55136099 +
3 domain predictions
1 GO term
LotjaGi3g1v0277900.3
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900 LjG1.1_chr3 55135788 55136099 +
3 domain predictions
1 GO term
LotjaGi3g1v0281000.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3SUS3|I3SUS3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281000 LjG1.1_chr3 56248106 56249187 -
3 domain predictions
1 GO term
LotjaGi3g1v0281100.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3T2M3|I3T2M3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281100 LjG1.1_chr3 56259530 56260648 -
3 domain predictions
1 GO term
LotjaGi3g1v0281600.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|Q9M531|H2A_EUPES Histone H2A; TrEMBL-Plants: tr|V4LCQ3|V4LCQ3_EUTSA Histone H2A; Found in the gene: LotjaGi3g1v0281600 LjG1.1_chr3 56352672 56353590 -
3 domain predictions
1 GO term
LotjaGi3g1v0290800.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0290800 LjG1.1_chr3 59255876 59256425 +
3 domain predictions
1 GO term
LotjaGi3g1v0290800.2
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|A0A0D3GD34|A0A0D3GD34_9ORYZ Uncharacterized protein; Found in the gene: LotjaGi3g1v0290800 LjG1.1_chr3 59255974 59269217 +
3 domain predictions
1 GO term
LotjaGi3g1v0290800.3
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0290800 LjG1.1_chr3 59256015 59256450 +
3 domain predictions
1 GO term
LotjaGi3g1v0312500.1
n.a. Nuclear factor Y subunit C; TAIR: AT3G12480.1 nuclear factor Y, subunit C11; Swiss-Prot: sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor; TrEMBL-Plants: tr|I3SPM8|I3SPM8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0312500 LjG1.1_chr3 66077312 66083097 +
3 domain predictions
1 GO term
LotjaGi3g1v0367900.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|K3XMR4|K3XMR4_SETIT Histone H2A; Found in the gene: LotjaGi3g1v0367900 LjG1.1_chr3 75393073 75394058 +
3 domain predictions
1 GO term
LotjaGi3g1v0415600.1
n.a. Transcription initiation factor TFIID subunit 12; TAIR: AT1G17440.1 Transcription initiation factor TFIID subunit A; Swiss-Prot: sp|Q940A7|TA12B_ARATH Transcription initiation factor TFIID subunit 12b; TrEMBL-Plants: tr|V7ATA8|V7ATA8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0415600 LjG1.1_chr3 82116528 82126917 -
3 domain predictions
1 GO term
LotjaGi3g1v0476800.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G27470.1 nuclear factor Y, subunit B11; Swiss-Prot: sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3; TrEMBL-Plants: tr|I3SSK4|I3SSK4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0476800 LjG1.1_chr3 89344654 89348051 -
3 domain predictions
1 GO term
LotjaGi3g1v0483400.1
n.a. Histone H2B; TAIR: AT2G28720.1 Histone superfamily protein; Swiss-Prot: sp|Q5BJA5|H2B1_DANRE Histone H2B 1/2; TrEMBL-Plants: tr|I1LKY2|I1LKY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0483400 LjG1.1_chr3 90080628 90082357 +
3 domain predictions
1 GO term
LotjaGi3g1v0495500.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495500 LjG1.1_chr3 91371317 91380179 +
3 domain predictions
1 GO term
LotjaGi3g1v0495500.2
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0495500 LjG1.1_chr3 91371375 91372084 +
3 domain predictions
1 GO term
LotjaGi3g1v0495500.3
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0495500 LjG1.1_chr3 91371515 91372084 +
3 domain predictions
1 GO term
LotjaGi3g1v0495500.4
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0495500 LjG1.1_chr3 91371674 91372094 +
3 domain predictions
1 GO term
LotjaGi3g1v0495500.5
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495500 LjG1.1_chr3 91379658 91380077 +
3 domain predictions
1 GO term
LotjaGi3g1v0495500.6
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495500 LjG1.1_chr3 91379667 91380093 +
3 domain predictions
1 GO term
LotjaGi3g1v0495600.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|A0A0B2S4D2|A0A0B2S4D2_GLYSO Histone H3; Found in the gene: LotjaGi3g1v0495600 LjG1.1_chr3 91382278 91382900 +
3 domain predictions
1 GO term
LotjaGi3g1v0495800.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495800 LjG1.1_chr3 91384644 91385054 +
3 domain predictions
1 GO term
LotjaGi3g1v0495900.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E1|H32_LILLO Histone H3.2; TrEMBL-Plants: tr|A0A0B2S4D2|A0A0B2S4D2_GLYSO Histone H3; Found in the gene: LotjaGi3g1v0495900 LjG1.1_chr3 91387839 91388424 +
3 domain predictions
1 GO term
LotjaGi4g1v0005900.1
n.a. Nuclear transcription factor Y protein; TAIR: AT5G47670.1 nuclear factor Y, subunit B6; Swiss-Prot: sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6; TrEMBL-Plants: tr|B5KMT1|B5KMT1_9FABA Transcription factor LEC1-B; Found in the gene: LotjaGi4g1v0005900 LjG1.1_chr4 913342 916133 -
3 domain predictions
1 GO term
LotjaGi4g1v0006200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT4G14540.1 nuclear factor Y, subunit B3; Swiss-Prot: sp|Q75IZ7|NFYB8_ORYSJ Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A151SBC7|A0A151SBC7_CAJCA Nuclear transcription factor Y subunit B-3; Found in the gene: LotjaGi4g1v0006200 LjG1.1_chr4 933363 934150 -
3 domain predictions
1 GO term
LotjaGi4g1v0064100.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 LjG1.1_chr4 8014456 8014873 -
3 domain predictions
1 GO term
LotjaGi4g1v0064100.2
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 LjG1.1_chr4 8014463 8015007 -
3 domain predictions
1 GO term
LotjaGi4g1v0064100.3
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 LjG1.1_chr4 8014463 8024810 -
3 domain predictions
1 GO term
LotjaGi4g1v0064100.4
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 LjG1.1_chr4 8024353 8024810 -
3 domain predictions
1 GO term