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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009072
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We have found 323 results. Now displaying 3 of 7 with 50 rows per page. This search has taken 5.792s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0321200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G13570.1 nuclear factor Y, subunit B7; Swiss-Prot: sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7; TrEMBL-Plants: tr|I1K511|I1K511_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321200 LjG1.1_chr1 77165065 77166947 +
3 domain predictions
1 GO term
LotjaGi1g1v0333200.1
n.a. Centromere protein S; TAIR: AT5G50930.1 Histone superfamily protein; Swiss-Prot: sp|Q8N2Z9|CENPS_HUMAN Centromere protein S; TrEMBL-Plants: tr|G7J3A4|G7J3A4_MEDTR Transcription initiation factor IID, 31 kDa subunit; Found in the gene: LotjaGi1g1v0333200 LjG1.1_chr1 79113394 79121781 -
3 domain predictions
1 GO term
LotjaGi1g1v0338400.1
n.a. Nuclear factor Y subunit C; TAIR: AT5G63470.1 nuclear factor Y, subunit C4; Swiss-Prot: sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4; TrEMBL-Plants: tr|I3SBJ9|I3SBJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0338400 LjG1.1_chr1 79877608 79882010 +
3 domain predictions
1 GO term
LotjaGi1g1v0338400.2
n.a. Nuclear factor Y subunit C; TAIR: AT5G63470.1 nuclear factor Y, subunit C4; Swiss-Prot: sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4; TrEMBL-Plants: tr|I3SBJ9|I3SBJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0338400 LjG1.1_chr1 79877693 79878460 +
3 domain predictions
1 GO term
LotjaGi1g1v0387400.1
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SBH0|I3SBH0_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0387400 LjG1.1_chr1 87069093 87069648 +
3 domain predictions
1 GO term
LotjaGi1g1v0387400.2
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q8H7Y8|H2AV1_ORYSJ Probable histone H2A variant 1; TrEMBL-Plants: tr|I3SBH0|I3SBH0_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0387400 LjG1.1_chr1 87069289 87069648 +
3 domain predictions
1 GO term
LotjaGi1g1v0447600.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi1g1v0447600 LjG1.1_chr1 94695105 94695540 -
3 domain predictions
1 GO term
LotjaGi1g1v0447600.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi1g1v0447600 LjG1.1_chr1 94695130 94695693 -
3 domain predictions
1 GO term
LotjaGi1g1v0447700.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi1g1v0447700 LjG1.1_chr1 94696325 94696894 +
3 domain predictions
1 GO term
LotjaGi1g1v0447700.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|A0A0D3AQT1|A0A0D3AQT1_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0447700 LjG1.1_chr1 94696325 94697015 +
3 domain predictions
1 GO term
LotjaGi1g1v0447700.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi1g1v0447700 LjG1.1_chr1 94696484 94696902 +
3 domain predictions
1 GO term
LotjaGi1g1v0512200.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi1g1v0512200 LjG1.1_chr1 103384595 103385025 -
3 domain predictions
1 GO term
LotjaGi1g1v0512200.2
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi1g1v0512200 LjG1.1_chr1 103384615 103385163 -
3 domain predictions
1 GO term
LotjaGi1g1v0514400.1
n.a. Transcription initiation factor TFIID subunit 8; TAIR: AT4G34340.1 TBP-associated factor 8; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|I1KWG4|I1KWG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0514400 LjG1.1_chr1 103673381 103681963 +
3 domain predictions
1 GO term
LotjaGi1g1v0514400.2
n.a. Transcription initiation factor TFIID subunit 8; TAIR: AT4G34340.1 TBP-associated factor 8; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|I1KWG4|I1KWG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0514400 LjG1.1_chr1 103673410 103676653 +
3 domain predictions
1 GO term
LotjaGi1g1v0539400.1
n.a. Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A0L9UX09|A0A0L9UX09_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0539400 LjG1.1_chr1 106795618 106802453 +
3 domain predictions
1 GO term
LotjaGi1g1v0575700.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I1H6W0|I1H6W0_BRADI Histone H2A; Found in the gene: LotjaGi1g1v0575700 LjG1.1_chr1 111117683 111118435 -
3 domain predictions
1 GO term
LotjaGi1g1v0594200.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0594200 LjG1.1_chr1 113419200 113420206 -
3 domain predictions
1 GO term
LotjaGi1g1v0594200.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0594200 LjG1.1_chr1 113419623 113419934 -
3 domain predictions
1 GO term
LotjaGi1g1v0694000_LC.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0L9U847|A0A0L9U847_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
3 domain predictions
1 GO term
LotjaGi1g1v0694000_LC.2
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0B2PJ97|A0A0B2PJ97_GLYSO Nuclear transcription factor Y subunit B-8; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
3 domain predictions
1 GO term
LotjaGi1g1v0694000_LC.3
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
3 domain predictions
1 GO term
LotjaGi1g1v0694000_LC.4
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
3 domain predictions
1 GO term
LotjaGi1g1v0698500.1
n.a. Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|I3SY24|I3SY24_LOTJA Histone H2B; Found in the gene: LotjaGi1g1v0698500 LjG1.1_chr1 126648314 126650391 +
3 domain predictions
1 GO term
LotjaGi1g1v0714800.1
n.a. Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|I3SM38|I3SM38_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0714800 LjG1.1_chr1 128275184 128281645 +
3 domain predictions
1 GO term
LotjaGi1g1v0732900.1
n.a. Histone H2A; TAIR: AT1G08880.1 Histone superfamily protein; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|V7CZN0|V7CZN0_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0732900 LjG1.1_chr1 130448252 130456740 +
3 domain predictions
1 GO term
LotjaGi1g1v0771500.1
n.a. Histone H2A; TAIR: AT5G27670.1 histone H2A 7; Swiss-Prot: sp|Q94F49|H2A5_ARATH Probable histone H2A.5; TrEMBL-Plants: tr|V7BPQ3|V7BPQ3_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0771500 LjG1.1_chr1 134421461 134422718 +
3 domain predictions
1 GO term
LotjaGi1g1v0774500.1
n.a. Nuclear factor Y subunit C; TAIR: AT1G08970.1 nuclear factor Y, subunit C9; Swiss-Prot: sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9; TrEMBL-Plants: tr|G7KYQ4|G7KYQ4_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi1g1v0774500 LjG1.1_chr1 134677702 134687442 -
3 domain predictions
1 GO term
LotjaGi1g1v0774500.2
n.a. Nuclear factor Y subunit C; TAIR: AT1G08970.1 nuclear factor Y, subunit C9; Swiss-Prot: sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9; TrEMBL-Plants: tr|G7KYQ4|G7KYQ4_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi1g1v0774500 LjG1.1_chr1 134681999 134687442 -
3 domain predictions
1 GO term
LotjaGi1g1v0774500.3
n.a. Nuclear factor Y subunit C; TAIR: AT1G08970.1 nuclear factor Y, subunit C9; Swiss-Prot: sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9; TrEMBL-Plants: tr|G7KYQ4|G7KYQ4_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi1g1v0774500 LjG1.1_chr1 134685264 134686105 -
3 domain predictions
1 GO term
LotjaGi1g1v0774500.4
n.a. Nuclear factor Y subunit C; TAIR: AT1G08970.1 nuclear factor Y, subunit C9; Swiss-Prot: sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9; TrEMBL-Plants: tr|G7KYQ4|G7KYQ4_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi1g1v0774500 LjG1.1_chr1 134685329 134686131 -
3 domain predictions
1 GO term
LotjaGi1g1v0776300.1
n.a. Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 LjG1.1_chr1 134858711 134860875 +
3 domain predictions
1 GO term
LotjaGi1g1v0776300.2
n.a. Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 LjG1.1_chr1 134858819 134859547 +
3 domain predictions
1 GO term
LotjaGi1g1v0776300.3
n.a. Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 LjG1.1_chr1 134858971 134859547 +
3 domain predictions
1 GO term
LotjaGi2g1v0081300.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0081300 LjG1.1_chr2 22144560 22145301 +
3 domain predictions
1 GO term
LotjaGi2g1v0081300.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0081300 LjG1.1_chr2 22144678 22144989 +
3 domain predictions
1 GO term
LotjaGi2g1v0366200.1
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|G7JTQ7|G7JTQ7_MEDTR Histone H2B; Found in the gene: LotjaGi2g1v0366200 LjG1.1_chr2 86371356 86372363 +
3 domain predictions
1 GO term
LotjaGi2g1v0366700.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700 LjG1.1_chr2 86406595 86407617 +
3 domain predictions
1 GO term
LotjaGi2g1v0366700.2
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700 LjG1.1_chr2 86406637 86407147 +
3 domain predictions
1 GO term
LotjaGi2g1v0366700.3
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700 LjG1.1_chr2 86406836 86407147 +
3 domain predictions
1 GO term
LotjaGi2g1v0370400.1
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370400 LjG1.1_chr2 86746332 86746783 +
3 domain predictions
1 GO term
LotjaGi2g1v0370600.1
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O22582|H2B_GOSHI Histone H2B; TrEMBL-Plants: tr|M1BEW2|M1BEW2_SOLTU Histone H2B; Found in the gene: LotjaGi2g1v0370600 LjG1.1_chr2 86754712 86755161 +
3 domain predictions
1 GO term
LotjaGi2g1v0370600.2
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370600 LjG1.1_chr2 86754712 86755161 +
3 domain predictions
1 GO term
LotjaGi2g1v0382900.1
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 LjG1.1_chr2 87931765 87933111 +
3 domain predictions
1 GO term
LotjaGi2g1v0382900.2
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 LjG1.1_chr2 87931765 87933224 +
3 domain predictions
1 GO term
LotjaGi2g1v0382900.3
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 LjG1.1_chr2 87931789 87934000 +
3 domain predictions
1 GO term
LotjaGi2g1v0382900.4
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 LjG1.1_chr2 87931925 87933111 +
3 domain predictions
1 GO term
LotjaGi2g1v0382900.5
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 LjG1.1_chr2 87931958 87933111 +
3 domain predictions
1 GO term
LotjaGi2g1v0382900.6
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 LjG1.1_chr2 87932042 87933129 +
3 domain predictions
1 GO term
LotjaGi2g1v0382900.7
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 LjG1.1_chr2 87932042 87933224 +
3 domain predictions
1 GO term