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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009072
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We have found 323 results. Now displaying 5 of 7 with 50 rows per page. This search has taken 5.853s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0064100.5
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 LjG1.1_chr4 8024400 8024891 -
3 domain predictions
1 GO term
LotjaGi4g1v0064100.6
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 LjG1.1_chr4 8024400 8025110 -
3 domain predictions
1 GO term
LotjaGi4g1v0094100.1
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi4g1v0094100 LjG1.1_chr4 12638594 12645967 -
3 domain predictions
1 GO term
LotjaGi4g1v0094100.2
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi4g1v0094100 LjG1.1_chr4 12644667 12645456 -
3 domain predictions
1 GO term
LotjaGi4g1v0094100.3
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|V7CZU0|V7CZU0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0094100 LjG1.1_chr4 12644685 12645536 -
3 domain predictions
1 GO term
LotjaGi4g1v0094100.4
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi4g1v0094100 LjG1.1_chr4 12644685 12645728 -
3 domain predictions
1 GO term
LotjaGi4g1v0137000_LC.1
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|D7SUM0|D7SUM0_VITVI Histone H2A; Found in the gene: LotjaGi4g1v0137000_LC LjG1.1_chr4 20095336 20095880 -
3 domain predictions
1 GO term
LotjaGi4g1v0137000_LC.2
n.a. Histone H2A; TAIR: AT2G38810.1 histone H2A 8; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A0R0GJB9|A0A0R0GJB9_SOYBN Histone H2A; Found in the gene: LotjaGi4g1v0137000_LC LjG1.1_chr4 20095336 20095930 -
3 domain predictions
1 GO term
LotjaGi4g1v0237700.1
n.a. Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0237700 LjG1.1_chr4 55332214 55363779 -
3 domain predictions
1 GO term
LotjaGi4g1v0237700.2
n.a. Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0237700 LjG1.1_chr4 55360764 55362997 -
3 domain predictions
1 GO term
LotjaGi4g1v0237700.3
n.a. Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0237700 LjG1.1_chr4 55360764 55362997 -
3 domain predictions
1 GO term
LotjaGi4g1v0262000.1
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.3 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3S8J7|I3S8J7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0262000 LjG1.1_chr4 62494498 62497921 +
3 domain predictions
1 GO term
LotjaGi4g1v0262000.2
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3S8J7|I3S8J7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0262000 LjG1.1_chr4 62494996 62497921 +
3 domain predictions
1 GO term
LotjaGi4g1v0262000.3
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.4 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3S8J7|I3S8J7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0262000 LjG1.1_chr4 62494996 62497921 +
3 domain predictions
1 GO term
LotjaGi4g1v0262000.4
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3S8J7|I3S8J7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0262000 LjG1.1_chr4 62494996 62497921 +
3 domain predictions
1 GO term
LotjaGi4g1v0262000.5
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3S8J7|I3S8J7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0262000 LjG1.1_chr4 62495238 62497921 +
3 domain predictions
1 GO term
LotjaGi4g1v0262000.6
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3S8J7|I3S8J7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0262000 LjG1.1_chr4 62495238 62497921 +
3 domain predictions
1 GO term
LotjaGi4g1v0266100.1
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3S6W2|I3S6W2_LOTJA Histone H2A; Found in the gene: LotjaGi4g1v0266100 LjG1.1_chr4 63112748 63114740 -
3 domain predictions
1 GO term
LotjaGi4g1v0300700.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67479420 67483623 -
3 domain predictions
1 GO term
LotjaGi4g1v0300700.2
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67479835 67480146 -
3 domain predictions
1 GO term
LotjaGi4g1v0300700.3
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67479835 67480146 -
3 domain predictions
1 GO term
LotjaGi4g1v0300700.4
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67479835 67480414 -
3 domain predictions
1 GO term
LotjaGi4g1v0300700.5
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67483101 67483412 -
3 domain predictions
1 GO term
LotjaGi4g1v0300700.6
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67483101 67483534 -
3 domain predictions
1 GO term
LotjaGi4g1v0300900.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300900 LjG1.1_chr4 67499799 67500523 -
3 domain predictions
1 GO term
LotjaGi4g1v0300900.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300900 LjG1.1_chr4 67500096 67500407 -
3 domain predictions
1 GO term
LotjaGi4g1v0334200.1
n.a. Transcription initiation factor TFIID subunit 9; TAIR: AT1G54140.1 TATA binding protein associated factor 21kDa subunit; Swiss-Prot: sp|Q9SYH2|TAF9_ARATH Transcription initiation factor TFIID subunit 9; TrEMBL-Plants: tr|I3S3W8|I3S3W8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0334200 LjG1.1_chr4 71308511 71311962 +
3 domain predictions
1 GO term
LotjaGi4g1v0343900.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G47810.1 nuclear factor Y, subunit B5; Swiss-Prot: sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5; TrEMBL-Plants: tr|A0A0B2QYD6|A0A0B2QYD6_GLYSO Nuclear transcription factor Y subunit B-5; Found in the gene: LotjaGi4g1v0343900 LjG1.1_chr4 72373176 72374451 +
3 domain predictions
1 GO term
LotjaGi4g1v0402200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT4G14540.1 nuclear factor Y, subunit B3; Swiss-Prot: sp|Q0J7P4|HD5_ORYSJ Nuclear transcription factor Y subunit B-11; TrEMBL-Plants: tr|A0A0B2S259|A0A0B2S259_GLYSO Nuclear transcription factor Y subunit B-3; Found in the gene: LotjaGi4g1v0402200 LjG1.1_chr4 77944876 77946291 +
3 domain predictions
1 GO term
LotjaGi4g1v0407000.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0407000 LjG1.1_chr4 78333186 78334221 -
3 domain predictions
1 GO term
LotjaGi4g1v0407000.2
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0407000 LjG1.1_chr4 78333430 78334031 -
3 domain predictions
1 GO term
LotjaGi4g1v0407000.3
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0407000 LjG1.1_chr4 78333439 78334031 -
3 domain predictions
1 GO term
LotjaGi4g1v0410500.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G13570.1 nuclear factor Y, subunit B7; Swiss-Prot: sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7; TrEMBL-Plants: tr|I1K511|I1K511_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410500 LjG1.1_chr4 78655077 78656390 +
3 domain predictions
1 GO term
LotjaGi5g1v0009100.1
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi5g1v0009100 LjG1.1_chr5 1964760 1966835 +
3 domain predictions
1 GO term
LotjaGi5g1v0009100.2
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi5g1v0009100 LjG1.1_chr5 1965017 1966020 +
3 domain predictions
1 GO term
LotjaGi5g1v0061500.1
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SSH5|I3SSH5_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0061500 LjG1.1_chr5 10277112 10281143 +
3 domain predictions
1 GO term
LotjaGi5g1v0061500.2
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500 LjG1.1_chr5 10279949 10280547 +
3 domain predictions
1 GO term
LotjaGi5g1v0061500.3
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500 LjG1.1_chr5 10279985 10280547 +
3 domain predictions
1 GO term
LotjaGi5g1v0061500.4
n.a. Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500 LjG1.1_chr5 10279994 10280547 +
3 domain predictions
1 GO term
LotjaGi5g1v0069100.1
n.a. Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q9ZUS0|H2B4_ARATH Histone H2B.4; TrEMBL-Plants: tr|I3T995|I3T995_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0069100 LjG1.1_chr5 11456091 11456513 -
3 domain predictions
1 GO term
LotjaGi5g1v0074500.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074500 LjG1.1_chr5 12353375 12358538 +
3 domain predictions
1 GO term
LotjaGi5g1v0074500.2
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074500 LjG1.1_chr5 12353375 12358538 +
3 domain predictions
1 GO term
LotjaGi5g1v0074500.3
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A1J7GR83|A0A1J7GR83_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074500 LjG1.1_chr5 12353635 12354270 +
3 domain predictions
1 GO term
LotjaGi5g1v0081700.1
n.a. Transcription initiation factor TFIID subunit 8; TAIR: AT4G34340.1 TBP-associated factor 8; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|K7LZR0|K7LZR0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0081700 LjG1.1_chr5 13363919 13368355 -
2 domain predictions
1 GO term
LotjaGi5g1v0081700.2
n.a. Transcription initiation factor TFIID subunit 8; TAIR: AT4G34340.1 TBP-associated factor 8; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|K7LZR0|K7LZR0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0081700 LjG1.1_chr5 13364358 13368385 -
2 domain predictions
1 GO term
LotjaGi5g1v0094200.1
n.a. Transcription initiation factor TFIID subunit 12; TAIR: AT3G10070.1 TBP-associated factor 12; Swiss-Prot: sp|Q9SR71|TAF12_ARATH Transcription initiation factor TFIID subunit 12; TrEMBL-Plants: tr|A0A151RJE5|A0A151RJE5_CAJCA Transcription initiation factor TFIID subunit 12; Found in the gene: LotjaGi5g1v0094200 LjG1.1_chr5 16536256 16544541 -
3 domain predictions
1 GO term
LotjaGi5g1v0108600.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi5g1v0108600 LjG1.1_chr5 20698180 20698606 -
3 domain predictions
1 GO term
LotjaGi5g1v0108600.2
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi5g1v0108600 LjG1.1_chr5 20698196 20698685 -
3 domain predictions
1 GO term
LotjaGi5g1v0161200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G38880.10 nuclear factor Y, subunit B1; Swiss-Prot: sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1; TrEMBL-Plants: tr|B9SD43|B9SD43_RICCO Ccaat-binding transcription factor subunit A, putative; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41408728 41414844 -
3 domain predictions
1 GO term
LotjaGi5g1v0161200.2
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|E0WC42|E0WC42_SOYBN CCAAT-binding transcription factor family protein; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41408728 41414844 -
3 domain predictions
1 GO term