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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0028840 |
| Transcript ID | Lj6g3v0028840.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357439465|ref|XP_003590009.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1062 | 1062 | 0 | – | |
| PANTHER | 1 | 1062 | 1062 | 0 | – | |
| Phobius | 1 | 1003 | 1003 | – | – | |
| CDD | 5 | 117 | 113 | 4.90E-44 | – | |
| Gene3D | 6 | 124 | 119 | 4.10E-38 | ||
| SUPERFAMILY | 7 | 116 | 110 | 2.33E-25 | ||
| Pfam | 8 | 116 | 109 | 1.70E-09 | ||
| ProSiteProfiles | 84 | 117 | 34 | 6.877 | ||
| MobiDBLite | 147 | 168 | 22 | – | – | |
| SUPERFAMILY | 218 | 601 | 384 | 1.31E-89 | ||
| Gene3D | 218 | 600 | 383 | 1.60E-96 | ||
| ProSiteProfiles | 277 | 328 | 52 | 14.363 | ||
| Pfam | 277 | 325 | 49 | 6.90E-08 | ||
| PRINTS | 279 | 295 | 17 | 1.60E-13 | ||
| Pfam | 328 | 379 | 52 | 2.10E-10 | ||
| PRINTS | 329 | 345 | 17 | 1.60E-13 | ||
| ProSiteProfiles | 329 | 383 | 55 | 13.981 | ||
| PRINTS | 370 | 386 | 17 | 1.60E-13 | ||
| Pfam | 383 | 432 | 50 | 8.10E-14 | ||
| ProSiteProfiles | 384 | 435 | 52 | 13.037 | ||
| PRINTS | 386 | 400 | 15 | 1.60E-13 | ||
| ProSitePatterns | 422 | 432 | 11 | – | ||
| ProSiteProfiles | 444 | 495 | 52 | 13.017 | ||
| Pfam | 446 | 492 | 47 | 1.00E-09 | ||
| PRINTS | 485 | 503 | 19 | 1.60E-13 | ||
| Pfam | 495 | 544 | 50 | 5.10E-05 | ||
| ProSiteProfiles | 496 | 547 | 52 | 11.871 | ||
| PRINTS | 543 | 564 | 22 | 1.60E-13 | ||
| ProSiteProfiles | 548 | 599 | 52 | 13.981 | ||
| Pfam | 549 | 596 | 48 | 1.60E-13 | ||
| SMART | 598 | 667 | 70 | 3.70E-21 | ||
| Pfam | 600 | 665 | 66 | 3.90E-13 | ||
| SUPERFAMILY | 600 | 669 | 70 | 3.79E-18 | ||
| Gene3D | 601 | 670 | 70 | 6.30E-17 | ||
| ProSiteProfiles | 604 | 666 | 63 | 11.54 | ||
| CDD | 610 | 662 | 53 | 5.88E-16 | – | |
| MobiDBLite | 750 | 798 | 49 | – | – | |
| CDD | 802 | 842 | 41 | 8.82E-04 | – | |
| Coils | 802 | 843 | 42 | – | – | |
| Pfam | 853 | 887 | 35 | 6.40E-07 | ||
| MobiDBLite | 911 | 993 | 83 | – | – | |
| Pfam | 996 | 1050 | 55 | 9.00E-25 | ||
| ProSiteProfiles | 996 | 1051 | 56 | 29.536 | ||
| Phobius | 1004 | 1020 | 17 | – | – | |
| Phobius | 1021 | 1079 | 59 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj6g3v0028840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0028840.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.