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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0689100 |
| Transcript ID | LotjaGi1g1v0689100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JPP3|I1JPP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0689100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125666832..125672262) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAAACAAAAAAAGGAAGAATTTCTTTGCAAACAAGAAAGAGAGCAAACCCCACCTTTAAATATCACCGAACTACCCT TAACCCCAAAAAACCCACACTCAGATCTACACGTCTCTCTGTAGATTCATTCCGCAGAGAAACCCAACCACCCACCATGG CGAATCAACCTGAATCCTCCGATTCGTACGTTTCGTTCCTCATTATCGCGATCGATCGTCGTTTCGTTTTCGATTTCGAT GAATCTCATTGATTGATTGTGTTTTTGTTGTTGTTGGGGTTTTCAGGAAGGGAACGAAGAGGGATTTTAGCACTGCGATT CTGGAGCGGAAGAAGGCGCCGAATCGGCTTGTTGTTGATGAGGCTGTTAATGATGACAACTCCGTCGTCGCTCTTCATCC CGCGACCATGGAGAAGCTCCAGCTCTTCCGTGGCGATACCATCTTGATTAAGGTATTGTTGCTCATTCTCTGTCTAATTG GGAATTGGGTTTTGATTAATTAGGGTTTTGACGTGGGAATTCGTTAGTTGAAGAAGCTAATTTTGATGTTCCCTATTGCT TTTCGTGAATTGGGTTTGCTTAATTAGGGTTTTAATGTATGAATTCGTTAATTGAAGCGGCTAATTTTGGGGTTCCCTAT TGATTTTCGTGATGTTACGATGTTGTTAGGGTTTGGGTATTTGAGAAAGTAGAAATCTGTATGCTTTTTTGCATTGGTTG TTGGCTTGTGGTATTAGTGGGGTATTTTGTACCGAAGGGAAAACACCTCTGCTAGATTTCTCGAGTTGCTGCTGCTTTCT GTGCAAATGCCCCTTGTGTAGAGGAAGTTGACTGAAAAAGGGACAATTTTGATGCAAGCCTTAGTTTGTATGCTTACATA ATAGGGTTATAATGTTAGAATTAATTTGTACGATCTGCTAATTTTGATCTTTTATATGTAACATTGAGGTTTCCCTTTAT TTCCGATGGTGTTATAGTATAACGGGCAGAGATAAAGTAGAAATTTAGTGTATTTTGTACCCATGGAAGGGTGCGTGGTG AGAGAGAACAGTGCTGGTTCTTTGTTTGAAAGTTGGTTAGAGATAACATTATAGGCTAAGTTTCTTCTGATAATTTCTCT TTGTGAAAATGGGACCATTCTGCTTTATGCACTGGGAGTTTTGTGCTATTATGTTGTGTGTTATATTACTTCTTCTTCAG TGGAAGTTCAAGTTGTTTCATTTCTTCCTTTTGGATAACTTGTGTCCTATATAATCATTGTGTTTCCTTTGCTTCTTTTG GTCTTTTAGGGAAAGAAAAGGAAAGATACAATCTGTATTGCACTTGCTGATGAAACATGTGAAGAACCAAAAATAAGAAT GAACAAGGTTGTGAGAAGCAACCTTAGGGTTAGGCTTGGAGATGTTGTTTCGGTGCACCAATGTGCTGATGTCAAGTATG GAAAGCGCGTCCACATTCTTCCTGTGGATGACACTATTGAAGGAGTGACGGGAAATCTCTTTGATGCGTACTTAAAACGT GAGTTACTGCTTCATATCTTATGATATCTAGTGACACTGTTTTTTATCTTCTGGTGTCAATATCCTTTTTATGCAATTGT GTCTTCGACTGTAATGGATAAATTGTATTTCAGGAGAATACATTTTAGTTAATTATAAATTCTGAGCTGCTTCACCCTGT CTGTGCTTACTACATGGTTGACGAAAGTTTTCTCTTATTCTCTATGGGTTAATATCAATCACGAAATCATTGATTTATAC ATTTTAGTTAATTATAAATTCTGAGCTGCTTCACCCTGTCTGTGCCTACTACATGGTTGAAGAAAGTTTTCTCTTATTCT TTATATGAAAATACCTTGGGTGAGTTTATATTGTCTCGCTAATTGTTTCTCTTAGAATTCTCTTCTTGCCAGACTCTTCG AACTTACTTCGTTTGTCTTGGGTGAATTTATATTGTAATGCTCAGCATTGGTTTCTCTAAGAATTATTACTAGAAAGTTA ATAGAGTTGAATGGCTATGGGACATAGTTGAATTTCTGTTGTTATTTTCCCTGGCGGTGACCCTCGGTTGACATTTGAGT TTGATGGTTGTTGCATTCTAATATATTTTGAATACTAAGCCTAGTTTTACTTTTGCAGCTTATTTCTTGGAGGCTTATCG ACCAGTGAGGAAGGGAGACCTCTTCCTTGTAAGAGGGGGTATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGAGCCTT CTGAGTACTGTGTTGTCGCCCCAGACACAGAGATCTTCTGTGAAGGAGAGCCTGTTAAAAGGGAGGATGAGAATCGATTA GATGAGGTTGGTTATGATGATGTTGGTGGCGTGAGAAAGCAGATGGCACAGATCAGGGAACTGGTGGAACTGCCACTGAG GCACCCACAGTTATTCAAGTCTATTGGTGTTAAGCCACCAAAAGGAATCCTTCTGTATGGACCCCCTGGATCTGGCAAGA CTTTGATTGCTAGAGCTGTTGCAAATGAAACTGGTGCTTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCAAAACTG GCTGGTGAGAGCGAGAGCAACCTCAGGAAGGCTTTCGAGGAAGCGGAGAAGAATGCACCCTCAATCATCTTCATTGATGA GATAGATTCAATAGCTCCAAAGAGGGAGAAGACTCATGGAGAAGTTGAGAGACGCATTGTTTCTCAGCTCTTGACACTCA TGGATGGGCTTAAATCTCGGGCCCATGTAATTGTCATTGGAGCCACAAATCGCCCCAACAGCATTGACCCTGCCCTTAGG AGATTTGGAAGGTTTGATCGGGAGATAGATATTGGCGTACCCGATGAAGTCGGGCGCCTTGAGGTTCTTCGAATTCATAC AAAGAACATGAAGCTTGCTGAAGATGTAATGTTCAAATTCATTTCCCCTAAGTTATAGTTTGATTTGAATGCTCTCATTT TGAATGGCATTTGTCTGTTGTGTCACTTGCAGGTTGATTTGGAAAAGATTTCTAAGAACACACATGGCTATGTTGGTGCT GATCTAGCTGCGTTGTGTACTGAAGCTGCACTTCAGTGCATCAGGGAAAAAATGGATGTGATTGACTTGGAAGATGAGGA AATTGATGCTGAAATATTGAACTCTATGGCTGTAACAAATGAACATTTCCAGACTGCTCTTGGATCAAGCAATCCTTCTG CTCTCCGTGAAACAGTAAGTATTTTATCCTGAAGTTTCTTTTATCAATGTTAAGCTTCCTATTCTCTTGTTTTCTCTTTC TTTTTGGTATCCTGTTGTACCTGAACTTTTCTAAGTTTCACGCACCTCTTTAATTTCAACTTTGTTACTGAACCAGGTTG TTGAAGTGCCCAATGTCAGCTGGGAGGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGGTTCGCTGAAGC TCTCGCATAATTCACATTATAGTTTCTAAGCTTTCTTTCATCTGTCTCTGATTTTTTCTACTGTTCTCTTTTGCAGACTG TTCAATATCCAGTGGAACACCCTGAGAAGTTTGAGAAATTTGGAATGTCACCTTCGAAGGGAGTTCTTTTCTATGGTCCC CCTGGGTGTGGTAAAACACTATTGGCTAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTGTCAAAGGTCCTGA GCTACTCACTATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGTG TCCTATTCTTCGATGAGCTTGACTCTATTGCAACTCAGGTTTGTACAATCCTGGTTTATAAGCTATAATTTGCACTTCAG GCAAAACTCTATCTGGAATGTTTGACACTATTTTCTTTCTAAGTATTTTGAATAGAGAAGATTAGTGTTATCTAGACAAT CATAGTTATCTTATATGATTACCTGTCCTTAAATTTTTGCTTCATTATATACTGCAGAGAGGTAGTAGTGTTGGAGATGC TGGTGGTGCTGCTGACAGGGTGTTGAACCAACTGCTTACTGAAATGGATGGGATGTCAGCAAAGAAAACTGTGTTCATCA TTGGGGCCACTAATCGACCAGACATTATAGACCCAGCTCTTTTGCGTCCAGGTCGTCTAGACCAGTTGATATATATCCCC CTCCCAGACGAGGATTCGCGCCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCAGTCTCAAAAGATGTTGATATTAG AGCTCTTGCAAAGTACACTCAAGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCTTGCAAATATGCCATTA GAGAGAACATTGAGAAGGTACTGTTTTACTGAGCTGTTTTTTTCTCTGTATTCCATTTACTTGCTGAGCCCCTTGAGAAC AATTGAAATCATTGTGAAAACTGGATCATCTTATAAAAAATTCTGTTCCAATTTCCCTTGACAGGACATTGAGAGAGAGA GGAGGAGAAGCGAGAACCCCGAGGCCATGGAAGAGGATGTTGATGATGAGGTGGCTGAAATCAAGGCAGCTCATTTTGAA GAATCAATGAAGTATGCACGAAGGAGTGTAAGCGATGCTGACATTCGGAAGTACCAGTCATTTGCCCAAACATTGCAGCA GTCTAGAGGGTTTGGATCTGAGTTTAGGTTTGCAGATTCCACCTCTGGTGGCGGTGCTGGTGCTGGTGCTGCATCTGATC CATTTGCAGCTGCTGGTGGGGCTGATGAAGATGATCTTTACAGTTAGATCAACTTGTATGATCGTTGTTTGTTCACGAAT CCCAGTGCTCGCTTATTTTATGTACTTCTCATTTTGTGTCTGAAGTCTCTAAAAGCTTCCTTTGGATTATTATCATCATT GCTTTGTGAAAGGCATTTGTTTATATTGGCCAACATTAGGTGCGAGCCTCTTCGAAACTTGGAAGGATTTTTTTTCTAAG TTTTTTTGTATAACTGTGCTGCCCACTCCCAAATTGCCAACATTTTATATGAACAAAACTTTACCGTTTATGCCCTTTTT CACATTTTCATGTTATAGGTTTCTTTTGGAGATGTCAAGGTTTATCTACGCAAGTTGATGTTATGGCCGAATATTTTTTT TATTTCTTTTAAGTATTTTGAAAACTGCACGCTTATTCACTTATTTTGAAATTATGATTTTCCGCTAAAATGAAAATTAC AATTTTCCTTTGAAACTTGCAAAAGCCTACTCTAAGGGTGTGTCTGTGAGTTGAGTTTTGGAGGTGAAAGATAAATGAGA AACCCTCTTCTGGCTGAGATCTTAAACGGGGAAAGATTTGGAGAAATTTTTAAAATTATTCAAGACCCTCATTTAGTTGT ATTTAGTTGTTTTGTGGAGTAACTTAAATTGGGTGTTTAGAGTGATTTAGACCTTTTAAAGAAAAGAATGG
CDS sequence (LotjaGi1g1v0689100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATCAACCTGAATCCTCCGATTCGAAGGGAACGAAGAGGGATTTTAGCACTGCGATTCTGGAGCGGAAGAAGGC GCCGAATCGGCTTGTTGTTGATGAGGCTGTTAATGATGACAACTCCGTCGTCGCTCTTCATCCCGCGACCATGGAGAAGC TCCAGCTCTTCCGTGGCGATACCATCTTGATTAAGGGAAAGAAAAGGAAAGATACAATCTGTATTGCACTTGCTGATGAA ACATGTGAAGAACCAAAAATAAGAATGAACAAGGTTGTGAGAAGCAACCTTAGGGTTAGGCTTGGAGATGTTGTTTCGGT GCACCAATGTGCTGATGTCAAGTATGGAAAGCGCGTCCACATTCTTCCTGTGGATGACACTATTGAAGGAGTGACGGGAA ATCTCTTTGATGCGTACTTAAAACCTTATTTCTTGGAGGCTTATCGACCAGTGAGGAAGGGAGACCTCTTCCTTGTAAGA GGGGGTATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGAGCCTTCTGAGTACTGTGTTGTCGCCCCAGACACAGAGAT CTTCTGTGAAGGAGAGCCTGTTAAAAGGGAGGATGAGAATCGATTAGATGAGGTTGGTTATGATGATGTTGGTGGCGTGA GAAAGCAGATGGCACAGATCAGGGAACTGGTGGAACTGCCACTGAGGCACCCACAGTTATTCAAGTCTATTGGTGTTAAG CCACCAAAAGGAATCCTTCTGTATGGACCCCCTGGATCTGGCAAGACTTTGATTGCTAGAGCTGTTGCAAATGAAACTGG TGCTTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCAAAACTGGCTGGTGAGAGCGAGAGCAACCTCAGGAAGGCTT TCGAGGAAGCGGAGAAGAATGCACCCTCAATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGAGGGAGAAGACT CATGGAGAAGTTGAGAGACGCATTGTTTCTCAGCTCTTGACACTCATGGATGGGCTTAAATCTCGGGCCCATGTAATTGT CATTGGAGCCACAAATCGCCCCAACAGCATTGACCCTGCCCTTAGGAGATTTGGAAGGTTTGATCGGGAGATAGATATTG GCGTACCCGATGAAGTCGGGCGCCTTGAGGTTCTTCGAATTCATACAAAGAACATGAAGCTTGCTGAAGATGTTGATTTG GAAAAGATTTCTAAGAACACACATGGCTATGTTGGTGCTGATCTAGCTGCGTTGTGTACTGAAGCTGCACTTCAGTGCAT CAGGGAAAAAATGGATGTGATTGACTTGGAAGATGAGGAAATTGATGCTGAAATATTGAACTCTATGGCTGTAACAAATG AACATTTCCAGACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGG GAGGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAGTT TGAGAAATTTGGAATGTCACCTTCGAAGGGAGTTCTTTTCTATGGTCCCCCTGGGTGTGGTAAAACACTATTGGCTAAAG CTATTGCCAATGAATGCCAGGCAAACTTCATCAGTGTCAAAGGTCCTGAGCTACTCACTATGTGGTTTGGAGAAAGTGAG GCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTCGATGAGCTTGACTCTATTGC AACTCAGAGAGGTAGTAGTGTTGGAGATGCTGGTGGTGCTGCTGACAGGGTGTTGAACCAACTGCTTACTGAAATGGATG GGATGTCAGCAAAGAAAACTGTGTTCATCATTGGGGCCACTAATCGACCAGACATTATAGACCCAGCTCTTTTGCGTCCA GGTCGTCTAGACCAGTTGATATATATCCCCCTCCCAGACGAGGATTCGCGCCATCAGATATTTAAAGCTTGCTTGAGAAA ATCCCCAGTCTCAAAAGATGTTGATATTAGAGCTCTTGCAAAGTACACTCAAGGCTTCAGTGGTGCTGATATTACTGAGA TTTGCCAGCGTGCTTGCAAATATGCCATTAGAGAGAACATTGAGAAGGACATTGAGAGAGAGAGGAGGAGAAGCGAGAAC CCCGAGGCCATGGAAGAGGATGTTGATGATGAGGTGGCTGAAATCAAGGCAGCTCATTTTGAAGAATCAATGAAGTATGC ACGAAGGAGTGTAAGCGATGCTGACATTCGGAAGTACCAGTCATTTGCCCAAACATTGCAGCAGTCTAGAGGGTTTGGAT CTGAGTTTAGGTTTGCAGATTCCACCTCTGGTGGCGGTGCTGGTGCTGGTGCTGCATCTGATCCATTTGCAGCTGCTGGT GGGGCTGATGAAGATGATCTTTACAGTTAG
Protein sequence (LotjaGi1g1v0689100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANQPESSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTILIKGKKRKDTICIALADE TCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVR GGMRSVEFKVIETEPSEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDL EKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDEEIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSW EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE ANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRP GRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN PEAMEEDVDDEVAEIKAAHFEESMKYARRSVSDADIRKYQSFAQTLQQSRGFGSEFRFADSTSGGGAGAGAASDPFAAAG GADEDDLYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 801 | 800 | 0.0 | – | |
| PANTHER | 2 | 801 | 800 | 0.0 | – | |
| Gene3D | 6 | 112 | 107 | 1.8E-50 | – | |
| SUPERFAMILY | 27 | 110 | 84 | 4.22E-28 | ||
| Pfam | 30 | 111 | 82 | 2.4E-22 | ||
| SMART | 30 | 113 | 84 | 1.6E-31 | ||
| TIGRFAM | 31 | 767 | 737 | 1.7E-267 | ||
| SUPERFAMILY | 112 | 204 | 93 | 8.17E-34 | ||
| Gene3D | 113 | 208 | 96 | 6.4E-48 | – | |
| SMART | 130 | 196 | 67 | 6.3E-16 | ||
| Pfam | 132 | 195 | 64 | 6.9E-13 | ||
| SUPERFAMILY | 204 | 466 | 263 | 3.76E-69 | ||
| Gene3D | 209 | 374 | 166 | 2.4E-66 | – | |
| CDD | 211 | 374 | 164 | 5.72258E-33 | – | |
| SMART | 241 | 377 | 137 | 5.7E-24 | ||
| Pfam | 245 | 374 | 130 | 3.7E-48 | ||
| ProSitePatterns | 345 | 363 | 19 | - | ||
| Gene3D | 376 | 471 | 96 | 5.1E-34 | – | |
| Pfam | 397 | 440 | 44 | 1.3E-14 | ||
| Gene3D | 472 | 652 | 181 | 2.8E-74 | – | |
| SUPERFAMILY | 476 | 764 | 289 | 2.75E-76 | ||
| CDD | 484 | 651 | 168 | 5.4419E-31 | – | |
| SMART | 514 | 653 | 140 | 2.4E-24 | ||
| Pfam | 518 | 651 | 134 | 3.2E-46 | ||
| ProSitePatterns | 621 | 639 | 19 | - | ||
| Gene3D | 653 | 767 | 115 | 4.8E-43 | – | |
| Pfam | 673 | 713 | 41 | 3.9E-13 | ||
| MobiDBLite | 781 | 809 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi1g1v0689100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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