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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0177300 |
| Transcript ID | LotjaGi1g1v0177300.2 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:34046551..34051197) extracted from Lotus japonicus Gifu genome v1.2.
ACTGTTAACAATGTATGTTTGGTGTAGGAAAAGTGACAAGAAGGATTATTCCACTGCAATACTAGAACGCAAGAAGTCCC CTAACCGTCTAGTAGTTGATGAAGCAATTAATGATGATAATTCAGTGGTTACTCTGCACCCTGTTACAATGGAAAAGCTT CAACTTTTCCGGGGTGACACGGTTCTGATAAAGGTACCTAGCTATAGCATCCATCTTCTATATAGGTTTAATGCAAGTGG AATGCAATTCTAAGAAATTAATTGAATGACACAGGGAAAGAAGAGAAGGGACACAATATGCATTGTTCTTACTGATGAAC TGTGTGATGAGCCAAAAATAAGGATGAATAAGGTTGTTCGGGCTAATCTTCGAGTGCGGCTTGGAGATGTTGTCTCTGTT CATCAATGTCCTGATGTCAAGTATGGGAGTCGAGTTCACATCCTTCCAATTGATGATACTATTGAGGGTGTCACTGGCAA CTTGTTTGATGCATATCTAAAGCGTAAGTTAAGTTTGTGCGTGTTGGATAATTTTATCAGAACTGATTGTGAAATAGAAT TGATTTTGTTAAAAATGAATATGGTAAAGTTGAGTTGAAAGTGAAGTGATTCGTTTTTGGATGTAAAAAGTGATCTCTAT AGCGTAGTGCTGTGAAATCCAGTTTTAAAATCTCACAATTGATTATGTTTACCGCAGAAGCTAGGATTTGTAGCTTCATC CTAAAATTGATTTTTCAATTGTAATAAATTGTGAGAGGAAACATCTAAACCAAAAACATAATTGATTTTGACAGTGTAGA ATCAATTCTAACCCTTGCAAATGTGAAGCCAAACATGCAGTTAGTTCAATATCATCATTTCCTTATTGCATTCGTAGTGA ATGTAAATATATAACTATAATGTTCTGGTTTCACAGCATATTTTCTGGAGTCATACCGGCCAGTGAGGAAAGGGGACTTG TTCCTCGTTAGGGGCGGGATGCGAAGCGTTGAATTCAAAGTAATAGAGACTGATCCTGGAGAATACTGTATTGTGGCACC TGATACTGAAATCTTCTGTGAGGGGGAACCCATCAAAAGGGAAGATGAGGAGAAATTGAATGAAGTTGGCTATGATGATG TTGGTGGTGTTAGGAAGCAAATGGCGCAAATTCGAGAGCTTGTAGAGCTTCCACTTAGACACCCGCAACTCTTCAAATCA ATTGGCGTTAAGCCCCCAAAAGGGATATTGCTTTATGGACCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTGGC TAATGAGACAGGTGCATTCTTCTTTCTGATTAATGGACCCGAAATCATGTCGAAGCTGGCCGGTGAGAGCGAGAGCAATC TGAGGAAGGCGTTTGAAGAAGCTGAAAATAACTCCCCTTCCATCATTTTTATTGATGAGTTGGACTCGATTGCTCCCAAG AGAGAGAAGACACACGGTGAAGTGGAGAGGCGTATTGTTTCGCAGCTTTTAACTCTAATGGATGGCCTCAAGTCTCGATC GCATGTTATTGTAATTGGAGCCACAAATAGGCCTAATAGTATTGATCCTGCTCTCAGAAGGTTCGGAAGGTTTGATCGGG AGATTGACATCGGCACACCGGACGAAATTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAATATGAAACTTTCAGAT AATGTAAGATTCCACTCATAACTTCGCTATTACACTATAAAACATGTGTATCTTGCATTTCACAATTGCAATTTTGTGCT GTGTTAATTTCAGGTTGATCTTGAAAGAGTAGCTAGAGATACCCATGGTTATGTTGGAGCAGATCTTGCTTCTCTTTGCA CAGAGGCTGCACTGCAGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCCGAGGTGTTG AGTTCCATGGCTGTGACCAACGAACACTTCCAAACTGCTTTAGGTTCTTCAAACCCATCTGCCCTGCGCGAAACAGTGAG TTTGGCTTCTTTATTCTTAACCGAAAACACTTTCAAACTGCTTTAGTTTTGGCTTTGATTACTCTAATTTGGGTTGCATA AGCTTTAAAATAAAACAAAAAATACTTATTTAGCATATTTCTGTTTCATCCCACCCATTGCCATATATGCCGAAAACTCA TGCAATAATTTCAATGACAGAACTTAATGAAAGTATTCTGTAAATTTATTTTAACCTTTCATGGAGCAATTTATTACAAG AATCATAACATGAGTTGTTGCTTTTGGTAGGTTGTGGAGGTTCCAAATGTTTCATGGGATGATATTGGAGGCTTAGAGAA TGTCAAAAGGGAGCTTCAAGAGGTTCAAACTTGCTTTTGATATCTTGAGTCTTAAATTGTGTTTTATTTGTATATGTACC TTTTAGTTTAGCAAGTTTTCATATTTTCAAACAAAAGTAAGAAATGTTTTGCTGCTTGTAGACTGTTCAATACCCAGTGG AACATCCTGAAAAGTTTGAGAAATTCGGCATGGCACCTTCCAAAGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAA ACCCTGTTAGCAAAAGCAATTGCTAATGAATGCCAAGCCAACTTCATAAGTGTCAAGGGCCCTGAGTTGCTGACAATGTG GTTTGGTGAAAGCGAGGCCAACGTTCGCGAAATATTTGATAAGGCCCGGGGATCAGCTCCATGTGTGCTTTTCTTTGATG AACTTGACTCAATTGCAACCCAGGTATTAATTAATTATACTAAACTCTATGAACATTAATTTGTTCATGACTCAATGGAT GCTAGTTGTTAGTCTTTACTTATTCCGTAGAATAAATTTTTAAATTCAAAAGCTACTCACAAAAGTTTCTTCTCAGAATT GATTCTGGCTCCAGAACCATGATTTCCAAACATGCACTTAACATTTCCATTCTTGTGCAGCGAGGCAGTTCTGTAGGGGA TGCTGGCGGTGCTGCAGATAGGGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACTGCTAAGAAAACGGTTTTCA TCATCGGCGCAACAAACAGACCAGACATCATAGACCCTGCATTGCTCAGGCCGGGACGATTGGACCAACTGATTTACATT CCTTTACCGGATGAAAGTTCACGCCTTCAAATCTTCAAGGCGTGTTTGAGGAAGTCGCCAATCTCTAAGGATGTTGACCT GGCTGCTCTGGCCCGTTACACTCAGGGATTTAGTGGTGCTGATATTACTGAAATTTGTCAACGAGCTTGCAAATATGCCA TCAGAGAAGATATTGAAAAGGTATGATATGATGGGAATGGGATGCACATGTGCAAATGCTTACATGTTTGGTTTTCTCAC CGTTTAAGCTACAAGAGTAGCTTTTTTCAAAAGGGGTTTGGAGACCATGGGAAGCCAAACATGCTATATGTTGTAAGGGC TTTACCTTGTGTAGTCATGGATCATAATTGTTTTCTGAAAGTTCTGGATATGCCTTTTAAGTTTTCTAAAGTCCAAGTCA CTAAGTATGCATTTGGGTGCGCATTTGTCAAATGTGAATTTGAAAGAACTGAAATTTTGTACAATTAGGTTGGTTAAAGT GGATTGAAGTATGCTATGAATCATAATTATTTTCTGAAAAATCTTGGATATGTCCCTAAGTTTTCTGAAGTTCAAGTCAC TTAAGAGTTAAGTATGTGTTTGGTGAGTTTGCTAAATGTGGTTTTGAATGGATTGAATTTTTTGTAGAATTAATTTGGTC CAGCTTGATTTAAAGTAAAATGATTTTAATTTGGATTTTATCTGCACAAAAGCTAGATAAAGCTACTTCTACCAAACATA GTTTAGTTTGATACTGCAAATTCACAACCAAGCATGTGATAAACCATCAATAACATCCATAACCTTTGTTCCTGTCTGAG TACAATTTCTTAAAACATGTCTGGAAATGATTTTTCACTCTCTGTAATTTGCTGCAAAAAGAATGGTTCATATGACAAAT TAACATGATCCCTTTGATGCAATATTTGTAGTATGAGTTTTTTATAAATGTTCTGTTACAGATAATTTTATTTTCTCCCC TTTGTAGAAGTTAGAGACTTAGAGCTTTTTTGAGCCCATTGGTTTACTCTCAGAAAGTATGAAAATGAGTAAATAACGCA TTCATTCCTAACACTTATAGTTGAAGTTGCAGGTTGTTACTTCAACAAGAAAGACATTGAAATGTGTTATTTTTCTGTTT TCATACTTTTTAACCGTAAATAAAATAAACCCTATTTGTTTAATTGCTTGATATGTACTTAATCTCTGGCATTAACAGGG TATAGAGCAGGAAAGAAGAAAAAGAGAGAACCCAGAAGCCATGGAAGAAGATGAGACTGAAGAGGAGGTAGCTGAGATAA AACCAGCTCACTTTGAAGAGTCAATGAAGTTTGCTCGCCGGAGTGTCAGTGATGCTGACATCAGGAAATACCAGGTGTTT GCTCAGACCTTGCAACAGTCTCGTGGAATCGGAACGGAGTTTCGGTTTCCTGACCGAAATGAGAACACTGCAACAGCAAC AGCCTCTGATCCTTTCTCGTCTGTTACCGCAGATGGAGAGGATGATCTCTACAGTTAATGGAAGTGTCCGATGTGAGTTG GGGTATG
CDS sequence (LotjaGi1g1v0177300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTTTGGTGTAGGAAAAGTGACAAGAAGGATTATTCCACTGCAATACTAGAACGCAAGAAGTCCCCTAACCGTCT AGTAGTTGATGAAGCAATTAATGATGATAATTCAGTGGTTACTCTGCACCCTGTTACAATGGAAAAGCTTCAACTTTTCC GGGGTGACACGGTTCTGATAAAGGGAAAGAAGAGAAGGGACACAATATGCATTGTTCTTACTGATGAACTGTGTGATGAG CCAAAAATAAGGATGAATAAGGTTGTTCGGGCTAATCTTCGAGTGCGGCTTGGAGATGTTGTCTCTGTTCATCAATGTCC TGATGTCAAGTATGGGAGTCGAGTTCACATCCTTCCAATTGATGATACTATTGAGGGTGTCACTGGCAACTTGTTTGATG CATATCTAAAGCCATATTTTCTGGAGTCATACCGGCCAGTGAGGAAAGGGGACTTGTTCCTCGTTAGGGGCGGGATGCGA AGCGTTGAATTCAAAGTAATAGAGACTGATCCTGGAGAATACTGTATTGTGGCACCTGATACTGAAATCTTCTGTGAGGG GGAACCCATCAAAAGGGAAGATGAGGAGAAATTGAATGAAGTTGGCTATGATGATGTTGGTGGTGTTAGGAAGCAAATGG CGCAAATTCGAGAGCTTGTAGAGCTTCCACTTAGACACCCGCAACTCTTCAAATCAATTGGCGTTAAGCCCCCAAAAGGG ATATTGCTTTATGGACCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTGGCTAATGAGACAGGTGCATTCTTCTT TCTGATTAATGGACCCGAAATCATGTCGAAGCTGGCCGGTGAGAGCGAGAGCAATCTGAGGAAGGCGTTTGAAGAAGCTG AAAATAACTCCCCTTCCATCATTTTTATTGATGAGTTGGACTCGATTGCTCCCAAGAGAGAGAAGACACACGGTGAAGTG GAGAGGCGTATTGTTTCGCAGCTTTTAACTCTAATGGATGGCCTCAAGTCTCGATCGCATGTTATTGTAATTGGAGCCAC AAATAGGCCTAATAGTATTGATCCTGCTCTCAGAAGGTTCGGAAGGTTTGATCGGGAGATTGACATCGGCACACCGGACG AAATTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAATATGAAACTTTCAGATAATGTTGATCTTGAAAGAGTAGCT AGAGATACCCATGGTTATGTTGGAGCAGATCTTGCTTCTCTTTGCACAGAGGCTGCACTGCAGTGTATCCGGGAGAAAAT GGATGTGATTGACTTAGAGGATGAAACAATTGATGCCGAGGTGTTGAGTTCCATGGCTGTGACCAACGAACACTTCCAAA CTGCTTTAGGTTCTTCAAACCCATCTGCCCTGCGCGAAACAGTTGTGGAGGTTCCAAATGTTTCATGGGATGATATTGGA GGCTTAGAGAATGTCAAAAGGGAGCTTCAAGAGACTGTTCAATACCCAGTGGAACATCCTGAAAAGTTTGAGAAATTCGG CATGGCACCTTCCAAAGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTGTTAGCAAAAGCAATTGCTAATG AATGCCAAGCCAACTTCATAAGTGTCAAGGGCCCTGAGTTGCTGACAATGTGGTTTGGTGAAAGCGAGGCCAACGTTCGC GAAATATTTGATAAGGCCCGGGGATCAGCTCCATGTGTGCTTTTCTTTGATGAACTTGACTCAATTGCAACCCAGCGAGG CAGTTCTGTAGGGGATGCTGGCGGTGCTGCAGATAGGGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACTGCTA AGAAAACGGTTTTCATCATCGGCGCAACAAACAGACCAGACATCATAGACCCTGCATTGCTCAGGCCGGGACGATTGGAC CAACTGATTTACATTCCTTTACCGGATGAAAGTTCACGCCTTCAAATCTTCAAGGCGTGTTTGAGGAAGTCGCCAATCTC TAAGGATGTTGACCTGGCTGCTCTGGCCCGTTACACTCAGGGATTTAGTGGTGCTGATATTACTGAAATTTGTCAACGAG CTTGCAAATATGCCATCAGAGAAGATATTGAAAAGGGTATAGAGCAGGAAAGAAGAAAAAGAGAGAACCCAGAAGCCATG GAAGAAGATGAGACTGAAGAGGAGGTAGCTGAGATAAAACCAGCTCACTTTGAAGAGTCAATGAAGTTTGCTCGCCGGAG TGTCAGTGATGCTGACATCAGGAAATACCAGGTGTTTGCTCAGACCTTGCAACAGTCTCGTGGAATCGGAACGGAGTTTC GGTTTCCTGACCGAAATGAGAACACTGCAACAGCAACAGCCTCTGATCCTTTCTCGTCTGTTACCGCAGATGGAGAGGAT GATCTCTACAGTTAA
Protein sequence (LotjaGi1g1v0177300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVWCRKSDKKDYSTAILERKKSPNRLVVDEAINDDNSVVTLHPVTMEKLQLFRGDTVLIKGKKRRDTICIVLTDELCDE PKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGSRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMR SVEFKVIETDPGEYCIVAPDTEIFCEGEPIKREDEEKLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKG ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAENNSPSIIFIDELDSIAPKREKTHGEV ERRIVSQLLTLMDGLKSRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGTPDEIGRLEVLRIHTKNMKLSDNVDLERVA RDTHGYVGADLASLCTEAALQCIREKMDVIDLEDETIDAEVLSSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIG GLENVKRELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR EIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLD QLIYIPLPDESSRLQIFKACLRKSPISKDVDLAALARYTQGFSGADITEICQRACKYAIREDIEKGIEQERRKRENPEAM EEDETEEEVAEIKPAHFEESMKFARRSVSDADIRKYQVFAQTLQQSRGIGTEFRFPDRNENTATATASDPFSSVTADGED DLYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 108 | 104 | 1.6E-48 | – | |
| PANTHER | 7 | 796 | 790 | 0.0 | – | |
| PANTHER | 7 | 796 | 790 | 0.0 | – | |
| SUPERFAMILY | 22 | 106 | 85 | 1.35E-27 | ||
| Pfam | 26 | 107 | 82 | 6.7E-22 | ||
| SMART | 26 | 109 | 84 | 7.3E-30 | ||
| TIGRFAM | 27 | 764 | 738 | 2.2E-262 | ||
| SUPERFAMILY | 108 | 200 | 93 | 5.89E-34 | ||
| Gene3D | 109 | 204 | 96 | 1.9E-47 | – | |
| SMART | 126 | 192 | 67 | 9.7E-16 | ||
| Pfam | 128 | 191 | 64 | 9.9E-12 | ||
| SUPERFAMILY | 200 | 462 | 263 | 7.65E-68 | ||
| Gene3D | 205 | 370 | 166 | 2.5E-65 | – | |
| CDD | 207 | 370 | 164 | 4.26506E-32 | – | |
| SMART | 237 | 373 | 137 | 4.8E-25 | ||
| Pfam | 241 | 370 | 130 | 1.7E-47 | ||
| ProSitePatterns | 341 | 359 | 19 | - | ||
| Gene3D | 372 | 467 | 96 | 2.3E-33 | – | |
| Pfam | 393 | 434 | 42 | 2.4E-13 | ||
| Gene3D | 468 | 648 | 181 | 3.6E-74 | – | |
| SUPERFAMILY | 472 | 762 | 291 | 5.83E-76 | ||
| CDD | 480 | 647 | 168 | 3.73813E-31 | – | |
| SMART | 510 | 649 | 140 | 2.7E-24 | ||
| Pfam | 514 | 647 | 134 | 2.4E-46 | ||
| ProSitePatterns | 617 | 635 | 19 | - | ||
| Gene3D | 649 | 764 | 116 | 5.5E-42 | – | |
| Pfam | 669 | 710 | 42 | 4.2E-14 | ||
| MobiDBLite | 709 | 729 | 21 | - | – | |
| MobiDBLite | 770 | 804 | 35 | - | – | |
| MobiDBLite | 777 | 793 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi1g1v0177300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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