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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0177300 |
| Transcript ID | LotjaGi1g1v0177300.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:34046580..34051422) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTCAACTGGTGAATGATTTTGCACATCAATATATACTTTGAATCAAACCACCAAGTGCATAGATATGTAGGGTTTT TCTATTAAGTAGAGGTCTTGACTCGAGTCACTGTAAATAGAATTGTGTTAAATTAGGATCACGTAGTGTGGTTCTATTAT TTATAGTAGTGTTGATTTAATTTAAAATATCATTTGAAAAATTTCAGGGATAAAAATTGGTCTTAACTGTTAACAATGTA TGTTTGGTGTAGGAAAAGTGACAAGAAGGATTATTCCACTGCAATACTAGAACGCAAGAAGTCCCCTAACCGTCTAGTAG TTGATGAAGCAATTAATGATGATAATTCAGTGGTTACTCTGCACCCTGTTACAATGGAAAAGCTTCAACTTTTCCGGGGT GACACGGTTCTGATAAAGGTACCTAGCTATAGCATCCATCTTCTATATAGGTTTAATGCAAGTGGAATGCAATTCTAAGA AATTAATTGAATGACACAGGGAAAGAAGAGAAGGGACACAATATGCATTGTTCTTACTGATGAACTGTGTGATGAGCCAA AAATAAGGATGAATAAGGTTGTTCGGGCTAATCTTCGAGTGCGGCTTGGAGATGTTGTCTCTGTTCATCAATGTCCTGAT GTCAAGTATGGGAGTCGAGTTCACATCCTTCCAATTGATGATACTATTGAGGGTGTCACTGGCAACTTGTTTGATGCATA TCTAAAGCGTAAGTTAAGTTTGTGCGTGTTGGATAATTTTATCAGAACTGATTGTGAAATAGAATTGATTTTGTTAAAAA TGAATATGGTAAAGTTGAGTTGAAAGTGAAGTGATTCGTTTTTGGATGTAAAAAGTGATCTCTATAGCGTAGTGCTGTGA AATCCAGTTTTAAAATCTCACAATTGATTATGTTTACCGCAGAAGCTAGGATTTGTAGCTTCATCCTAAAATTGATTTTT CAATTGTAATAAATTGTGAGAGGAAACATCTAAACCAAAAACATAATTGATTTTGACAGTGTAGAATCAATTCTAACCCT TGCAAATGTGAAGCCAAACATGCAGTTAGTTCAATATCATCATTTCCTTATTGCATTCGTAGTGAATGTAAATATATAAC TATAATGTTCTGGTTTCACAGCATATTTTCTGGAGTCATACCGGCCAGTGAGGAAAGGGGACTTGTTCCTCGTTAGGGGC GGGATGCGAAGCGTTGAATTCAAAGTAATAGAGACTGATCCTGGAGAATACTGTATTGTGGCACCTGATACTGAAATCTT CTGTGAGGGGGAACCCATCAAAAGGGAAGATGAGGAGAAATTGAATGAAGTTGGCTATGATGATGTTGGTGGTGTTAGGA AGCAAATGGCGCAAATTCGAGAGCTTGTAGAGCTTCCACTTAGACACCCGCAACTCTTCAAATCAATTGGCGTTAAGCCC CCAAAAGGGATATTGCTTTATGGACCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTGGCTAATGAGACAGGTGC ATTCTTCTTTCTGATTAATGGACCCGAAATCATGTCGAAGCTGGCCGGTGAGAGCGAGAGCAATCTGAGGAAGGCGTTTG AAGAAGCTGAAAATAACTCCCCTTCCATCATTTTTATTGATGAGTTGGACTCGATTGCTCCCAAGAGAGAGAAGACACAC GGTGAAGTGGAGAGGCGTATTGTTTCGCAGCTTTTAACTCTAATGGATGGCCTCAAGTCTCGATCGCATGTTATTGTAAT TGGAGCCACAAATAGGCCTAATAGTATTGATCCTGCTCTCAGAAGGTTCGGAAGGTTTGATCGGGAGATTGACATCGGCA CACCGGACGAAATTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAATATGAAACTTTCAGATAATGTAAGATTCCAC TCATAACTTCGCTATTACACTATAAAACATGTGTATCTTGCATTTCACAATTGCAATTTTGTGCTGTGTTAATTTCAGGT TGATCTTGAAAGAGTAGCTAGAGATACCCATGGTTATGTTGGAGCAGATCTTGCTTCTCTTTGCACAGAGGCTGCACTGC AGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCCGAGGTGTTGAGTTCCATGGCTGTG ACCAACGAACACTTCCAAACTGCTTTAGGTTCTTCAAACCCATCTGCCCTGCGCGAAACAGTGAGTTTGGCTTCTTTATT CTTAACCGAAAACACTTTCAAACTGCTTTAGTTTTGGCTTTGATTACTCTAATTTGGGTTGCATAAGCTTTAAAATAAAA CAAAAAATACTTATTTAGCATATTTCTGTTTCATCCCACCCATTGCCATATATGCCGAAAACTCATGCAATAATTTCAAT GACAGAACTTAATGAAAGTATTCTGTAAATTTATTTTAACCTTTCATGGAGCAATTTATTACAAGAATCATAACATGAGT TGTTGCTTTTGGTAGGTTGTGGAGGTTCCAAATGTTTCATGGGATGATATTGGAGGCTTAGAGAATGTCAAAAGGGAGCT TCAAGAGGTTCAAACTTGCTTTTGATATCTTGAGTCTTAAATTGTGTTTTATTTGTATATGTACCTTTTAGTTTAGCAAG TTTTCATATTTTCAAACAAAAGTAAGAAATGTTTTGCTGCTTGTAGACTGTTCAATACCCAGTGGAACATCCTGAAAAGT TTGAGAAATTCGGCATGGCACCTTCCAAAGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTGTTAGCAAAA GCAATTGCTAATGAATGCCAAGCCAACTTCATAAGTGTCAAGGGCCCTGAGTTGCTGACAATGTGGTTTGGTGAAAGCGA GGCCAACGTTCGCGAAATATTTGATAAGGCCCGGGGATCAGCTCCATGTGTGCTTTTCTTTGATGAACTTGACTCAATTG CAACCCAGGTATTAATTAATTATACTAAACTCTATGAACATTAATTTGTTCATGACTCAATGGATGCTAGTTGTTAGTCT TTACTTATTCCGTAGAATAAATTTTTAAATTCAAAAGCTACTCACAAAAGTTTCTTCTCAGAATTGATTCTGGCTCCAGA ACCATGATTTCCAAACATGCACTTAACATTTCCATTCTTGTGCAGCGAGGCAGTTCTGTAGGGGATGCTGGCGGTGCTGC AGATAGGGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACTGCTAAGAAAACGGTTTTCATCATCGGCGCAACAA ACAGACCAGACATCATAGACCCTGCATTGCTCAGGCCGGGACGATTGGACCAACTGATTTACATTCCTTTACCGGATGAA AGTTCACGCCTTCAAATCTTCAAGGCGTGTTTGAGGAAGTCGCCAATCTCTAAGGATGTTGACCTGGCTGCTCTGGCCCG TTACACTCAGGGATTTAGTGGTGCTGATATTACTGAAATTTGTCAACGAGCTTGCAAATATGCCATCAGAGAAGATATTG AAAAGGTATGATATGATGGGAATGGGATGCACATGTGCAAATGCTTACATGTTTGGTTTTCTCACCGTTTAAGCTACAAG AGTAGCTTTTTTCAAAAGGGGTTTGGAGACCATGGGAAGCCAAACATGCTATATGTTGTAAGGGCTTTACCTTGTGTAGT CATGGATCATAATTGTTTTCTGAAAGTTCTGGATATGCCTTTTAAGTTTTCTAAAGTCCAAGTCACTAAGTATGCATTTG GGTGCGCATTTGTCAAATGTGAATTTGAAAGAACTGAAATTTTGTACAATTAGGTTGGTTAAAGTGGATTGAAGTATGCT ATGAATCATAATTATTTTCTGAAAAATCTTGGATATGTCCCTAAGTTTTCTGAAGTTCAAGTCACTTAAGAGTTAAGTAT GTGTTTGGTGAGTTTGCTAAATGTGGTTTTGAATGGATTGAATTTTTTGTAGAATTAATTTGGTCCAGCTTGATTTAAAG TAAAATGATTTTAATTTGGATTTTATCTGCACAAAAGCTAGATAAAGCTACTTCTACCAAACATAGTTTAGTTTGATACT GCAAATTCACAACCAAGCATGTGATAAACCATCAATAACATCCATAACCTTTGTTCCTGTCTGAGTACAATTTCTTAAAA CATGTCTGGAAATGATTTTTCACTCTCTGTAATTTGCTGCAAAAAGAATGGTTCATATGACAAATTAACATGATCCCTTT GATGCAATATTTGTAGTATGAGTTTTTTATAAATGTTCTGTTACAGATAATTTTATTTTCTCCCCTTTGTAGAAGTTAGA GACTTAGAGCTTTTTTGAGCCCATTGGTTTACTCTCAGAAAGTATGAAAATGAGTAAATAACGCATTCATTCCTAACACT TATAGTTGAAGTTGCAGGTTGTTACTTCAACAAGAAAGACATTGAAATGTGTTATTTTTCTGTTTTCATACTTTTTAACC GTAAATAAAATAAACCCTATTTGTTTAATTGCTTGATATGTACTTAATCTCTGGCATTAACAGGGTATAGAGCAGGAAAG AAGAAAAAGAGAGAACCCAGAAGCCATGGAAGAAGATGAGACTGAAGAGGAGGTAGCTGAGATAAAACCAGCTCACTTTG AAGAGTCAATGAAGTTTGCTCGCCGGAGTGTCAGTGATGCTGACATCAGGAAATACCAGGTGTTTGCTCAGACCTTGCAA CAGTCTCGTGGAATCGGAACGGAGTTTCGGTTTCCTGACCGAAATGAGAACACTGCAACAGCAACAGCCTCTGATCCTTT CTCGTCTGTTACCGCAGATGGAGAGGATGATCTCTACAGTTAA
CDS sequence (LotjaGi1g1v0177300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGTGACAAGAAGGATTATTCCACTGCAATACTAGAACGCAAGAAGTCCCCTAACCGTCTAGTAGTTGATGAAGC AATTAATGATGATAATTCAGTGGTTACTCTGCACCCTGTTACAATGGAAAAGCTTCAACTTTTCCGGGGTGACACGGTTC TGATAAAGGGAAAGAAGAGAAGGGACACAATATGCATTGTTCTTACTGATGAACTGTGTGATGAGCCAAAAATAAGGATG AATAAGGTTGTTCGGGCTAATCTTCGAGTGCGGCTTGGAGATGTTGTCTCTGTTCATCAATGTCCTGATGTCAAGTATGG GAGTCGAGTTCACATCCTTCCAATTGATGATACTATTGAGGGTGTCACTGGCAACTTGTTTGATGCATATCTAAAGCCAT ATTTTCTGGAGTCATACCGGCCAGTGAGGAAAGGGGACTTGTTCCTCGTTAGGGGCGGGATGCGAAGCGTTGAATTCAAA GTAATAGAGACTGATCCTGGAGAATACTGTATTGTGGCACCTGATACTGAAATCTTCTGTGAGGGGGAACCCATCAAAAG GGAAGATGAGGAGAAATTGAATGAAGTTGGCTATGATGATGTTGGTGGTGTTAGGAAGCAAATGGCGCAAATTCGAGAGC TTGTAGAGCTTCCACTTAGACACCCGCAACTCTTCAAATCAATTGGCGTTAAGCCCCCAAAAGGGATATTGCTTTATGGA CCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTGGCTAATGAGACAGGTGCATTCTTCTTTCTGATTAATGGACC CGAAATCATGTCGAAGCTGGCCGGTGAGAGCGAGAGCAATCTGAGGAAGGCGTTTGAAGAAGCTGAAAATAACTCCCCTT CCATCATTTTTATTGATGAGTTGGACTCGATTGCTCCCAAGAGAGAGAAGACACACGGTGAAGTGGAGAGGCGTATTGTT TCGCAGCTTTTAACTCTAATGGATGGCCTCAAGTCTCGATCGCATGTTATTGTAATTGGAGCCACAAATAGGCCTAATAG TATTGATCCTGCTCTCAGAAGGTTCGGAAGGTTTGATCGGGAGATTGACATCGGCACACCGGACGAAATTGGAAGGTTGG AGGTTCTTAGAATTCATACAAAGAATATGAAACTTTCAGATAATGTTGATCTTGAAAGAGTAGCTAGAGATACCCATGGT TATGTTGGAGCAGATCTTGCTTCTCTTTGCACAGAGGCTGCACTGCAGTGTATCCGGGAGAAAATGGATGTGATTGACTT AGAGGATGAAACAATTGATGCCGAGGTGTTGAGTTCCATGGCTGTGACCAACGAACACTTCCAAACTGCTTTAGGTTCTT CAAACCCATCTGCCCTGCGCGAAACAGTTGTGGAGGTTCCAAATGTTTCATGGGATGATATTGGAGGCTTAGAGAATGTC AAAAGGGAGCTTCAAGAGACTGTTCAATACCCAGTGGAACATCCTGAAAAGTTTGAGAAATTCGGCATGGCACCTTCCAA AGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTGTTAGCAAAAGCAATTGCTAATGAATGCCAAGCCAACT TCATAAGTGTCAAGGGCCCTGAGTTGCTGACAATGTGGTTTGGTGAAAGCGAGGCCAACGTTCGCGAAATATTTGATAAG GCCCGGGGATCAGCTCCATGTGTGCTTTTCTTTGATGAACTTGACTCAATTGCAACCCAGCGAGGCAGTTCTGTAGGGGA TGCTGGCGGTGCTGCAGATAGGGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACTGCTAAGAAAACGGTTTTCA TCATCGGCGCAACAAACAGACCAGACATCATAGACCCTGCATTGCTCAGGCCGGGACGATTGGACCAACTGATTTACATT CCTTTACCGGATGAAAGTTCACGCCTTCAAATCTTCAAGGCGTGTTTGAGGAAGTCGCCAATCTCTAAGGATGTTGACCT GGCTGCTCTGGCCCGTTACACTCAGGGATTTAGTGGTGCTGATATTACTGAAATTTGTCAACGAGCTTGCAAATATGCCA TCAGAGAAGATATTGAAAAGGGTATAGAGCAGGAAAGAAGAAAAAGAGAGAACCCAGAAGCCATGGAAGAAGATGAGACT GAAGAGGAGGTAGCTGAGATAAAACCAGCTCACTTTGAAGAGTCAATGAAGTTTGCTCGCCGGAGTGTCAGTGATGCTGA CATCAGGAAATACCAGGTGTTTGCTCAGACCTTGCAACAGTCTCGTGGAATCGGAACGGAGTTTCGGTTTCCTGACCGAA ATGAGAACACTGCAACAGCAACAGCCTCTGATCCTTTCTCGTCTGTTACCGCAGATGGAGAGGATGATCTCTACAGTTAA
Protein sequence (LotjaGi1g1v0177300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSDKKDYSTAILERKKSPNRLVVDEAINDDNSVVTLHPVTMEKLQLFRGDTVLIKGKKRRDTICIVLTDELCDEPKIRM NKVVRANLRVRLGDVVSVHQCPDVKYGSRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFK VIETDPGEYCIVAPDTEIFCEGEPIKREDEEKLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYG PPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAENNSPSIIFIDELDSIAPKREKTHGEVERRIV SQLLTLMDGLKSRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGTPDEIGRLEVLRIHTKNMKLSDNVDLERVARDTHG YVGADLASLCTEAALQCIREKMDVIDLEDETIDAEVLSSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENV KRELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDK ARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI PLPDESSRLQIFKACLRKSPISKDVDLAALARYTQGFSGADITEICQRACKYAIREDIEKGIEQERRKRENPEAMEEDET EEEVAEIKPAHFEESMKFARRSVSDADIRKYQVFAQTLQQSRGIGTEFRFPDRNENTATATASDPFSSVTADGEDDLYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 103 | 103 | 1.9E-48 | – | |
| PANTHER | 2 | 791 | 790 | 0.0 | – | |
| PANTHER | 2 | 791 | 790 | 0.0 | – | |
| SUPERFAMILY | 17 | 101 | 85 | 1.49E-27 | ||
| Pfam | 21 | 102 | 82 | 6.6E-22 | ||
| SMART | 21 | 104 | 84 | 7.3E-30 | ||
| TIGRFAM | 22 | 759 | 738 | 2.1E-262 | ||
| SUPERFAMILY | 103 | 195 | 93 | 5.89E-34 | ||
| Gene3D | 104 | 199 | 96 | 1.9E-47 | – | |
| SMART | 121 | 187 | 67 | 9.7E-16 | ||
| Pfam | 123 | 186 | 64 | 9.8E-12 | ||
| SUPERFAMILY | 195 | 457 | 263 | 7.65E-68 | ||
| Gene3D | 200 | 365 | 166 | 2.4E-65 | – | |
| CDD | 202 | 365 | 164 | 6.11696E-32 | – | |
| SMART | 232 | 368 | 137 | 4.8E-25 | ||
| Pfam | 236 | 365 | 130 | 1.7E-47 | ||
| ProSitePatterns | 336 | 354 | 19 | - | ||
| Gene3D | 367 | 462 | 96 | 2.3E-33 | – | |
| Pfam | 388 | 429 | 42 | 2.4E-13 | ||
| Gene3D | 463 | 643 | 181 | 3.6E-74 | – | |
| SUPERFAMILY | 467 | 757 | 291 | 5.83E-76 | ||
| CDD | 475 | 642 | 168 | 5.25876E-31 | – | |
| SMART | 505 | 644 | 140 | 2.7E-24 | ||
| Pfam | 509 | 642 | 134 | 2.4E-46 | ||
| ProSitePatterns | 612 | 630 | 19 | - | ||
| Gene3D | 644 | 759 | 116 | 5.4E-42 | – | |
| Pfam | 664 | 705 | 42 | 4.2E-14 | ||
| MobiDBLite | 704 | 724 | 21 | - | – | |
| MobiDBLite | 765 | 799 | 35 | - | – | |
| MobiDBLite | 772 | 788 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi1g1v0177300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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