Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0177300 |
| Transcript ID | LotjaGi1g1v0177300.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:34046580..34051264) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATAGTAGTGTTGATTTAATTTAAAATATCATTTGAAAAATTTCAGGGATAAAAATTGGTCTTAACTGTTAACAATG TATGTTTGGTGTAGGAAAAGTGACAAGAAGGATTATTCCACTGCAATACTAGAACGCAAGAAGTCCCCTAACCGTCTAGT AGTTGATGAAGCAATTAATGATGATAATTCAGTGGTTACTCTGCACCCTGTTACAATGGAAAAGCTTCAACTTTTCCGGG GTGACACGGTTCTGATAAAGGTACCTAGCTATAGCATCCATCTTCTATATAGGTTTAATGCAAGTGGAATGCAATTCTAA GAAATTAATTGAATGACACAGGGAAAGAAGAGAAGGGACACAATATGCATTGTTCTTACTGATGAACTGTGTGATGAGCC AAAAATAAGGATGAATAAGGTTGTTCGGGCTAATCTTCGAGTGCGGCTTGGAGATGTTGTCTCTGTTCATCAATGTCCTG ATGTCAAGTATGGGAGTCGAGTTCACATCCTTCCAATTGATGATACTATTGAGGGTGTCACTGGCAACTTGTTTGATGCA TATCTAAAGCGTAAGTTAAGTTTGTGCGTGTTGGATAATTTTATCAGAACTGATTGTGAAATAGAATTGATTTTGTTAAA AATGAATATGGTAAAGTTGAGTTGAAAGTGAAGTGATTCGTTTTTGGATGTAAAAAGTGATCTCTATAGCGTAGTGCTGT GAAATCCAGTTTTAAAATCTCACAATTGATTATGTTTACCGCAGAAGCTAGGATTTGTAGCTTCATCCTAAAATTGATTT TTCAATTGTAATAAATTGTGAGAGGAAACATCTAAACCAAAAACATAATTGATTTTGACAGTGTAGAATCAATTCTAACC CTTGCAAATGTGAAGCCAAACATGCAGTTAGTTCAATATCATCATTTCCTTATTGCATTCGTAGTGAATGTAAATATATA ACTATAATGTTCTGGTTTCACAGCATATTTTCTGGAGTCATACCGGCCAGTGAGGAAAGGGGACTTGTTCCTCGTTAGGG GCGGGATGCGAAGCGTTGAATTCAAAGTAATAGAGACTGATCCTGGAGAATACTGTATTGTGGCACCTGATACTGAAATC TTCTGTGAGGGGGAACCCATCAAAAGGGAAGATGAGGAGAAATTGAATGAAGTTGGCTATGATGATGTTGGTGGTGTTAG GAAGCAAATGGCGCAAATTCGAGAGCTTGTAGAGCTTCCACTTAGACACCCGCAACTCTTCAAATCAATTGGCGTTAAGC CCCCAAAAGGGATATTGCTTTATGGACCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTGGCTAATGAGACAGGT GCATTCTTCTTTCTGATTAATGGACCCGAAATCATGTCGAAGCTGGCCGGTGAGAGCGAGAGCAATCTGAGGAAGGCGTT TGAAGAAGCTGAAAATAACTCCCCTTCCATCATTTTTATTGATGAGTTGGACTCGATTGCTCCCAAGAGAGAGAAGACAC ACGGTGAAGTGGAGAGGCGTATTGTTTCGCAGCTTTTAACTCTAATGGATGGCCTCAAGTCTCGATCGCATGTTATTGTA ATTGGAGCCACAAATAGGCCTAATAGTATTGATCCTGCTCTCAGAAGGTTCGGAAGGTTTGATCGGGAGATTGACATCGG CACACCGGACGAAATTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAATATGAAACTTTCAGATAATGTAAGATTCC ACTCATAACTTCGCTATTACACTATAAAACATGTGTATCTTGCATTTCACAATTGCAATTTTGTGCTGTGTTAATTTCAG GTTGATCTTGAAAGAGTAGCTAGAGATACCCATGGTTATGTTGGAGCAGATCTTGCTTCTCTTTGCACAGAGGCTGCACT GCAGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCCGAGGTGTTGAGTTCCATGGCTG TGACCAACGAACACTTCCAAACTGCTTTAGGTTCTTCAAACCCATCTGCCCTGCGCGAAACAGTGAGTTTGGCTTCTTTA TTCTTAACCGAAAACACTTTCAAACTGCTTTAGTTTTGGCTTTGATTACTCTAATTTGGGTTGCATAAGCTTTAAAATAA AACAAAAAATACTTATTTAGCATATTTCTGTTTCATCCCACCCATTGCCATATATGCCGAAAACTCATGCAATAATTTCA ATGACAGAACTTAATGAAAGTATTCTGTAAATTTATTTTAACCTTTCATGGAGCAATTTATTACAAGAATCATAACATGA GTTGTTGCTTTTGGTAGGTTGTGGAGGTTCCAAATGTTTCATGGGATGATATTGGAGGCTTAGAGAATGTCAAAAGGGAG CTTCAAGAGGTTCAAACTTGCTTTTGATATCTTGAGTCTTAAATTGTGTTTTATTTGTATATGTACCTTTTAGTTTAGCA AGTTTTCATATTTTCAAACAAAAGTAAGAAATGTTTTGCTGCTTGTAGACTGTTCAATACCCAGTGGAACATCCTGAAAA GTTTGAGAAATTCGGCATGGCACCTTCCAAAGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTGTTAGCAA AAGCAATTGCTAATGAATGCCAAGCCAACTTCATAAGTGTCAAGGGCCCTGAGTTGCTGACAATGTGGTTTGGTGAAAGC GAGGCCAACGTTCGCGAAATATTTGATAAGGCCCGGGGATCAGCTCCATGTGTGCTTTTCTTTGATGAACTTGACTCAAT TGCAACCCAGGTATTAATTAATTATACTAAACTCTATGAACATTAATTTGTTCATGACTCAATGGATGCTAGTTGTTAGT CTTTACTTATTCCGTAGAATAAATTTTTAAATTCAAAAGCTACTCACAAAAGTTTCTTCTCAGAATTGATTCTGGCTCCA GAACCATGATTTCCAAACATGCACTTAACATTTCCATTCTTGTGCAGCGAGGCAGTTCTGTAGGGGATGCTGGCGGTGCT GCAGATAGGGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACTGCTAAGAAAACGGTTTTCATCATCGGCGCAAC AAACAGACCAGACATCATAGACCCTGCATTGCTCAGGCCGGGACGATTGGACCAACTGATTTACATTCCTTTACCGGATG AAAGTTCACGCCTTCAAATCTTCAAGGCGTGTTTGAGGAAGTCGCCAATCTCTAAGGATGTTGACCTGGCTGCTCTGGCC CGTTACACTCAGGGATTTAGTGGTGCTGATATTACTGAAATTTGTCAACGAGCTTGCAAATATGCCATCAGAGAAGATAT TGAAAAGGTATGATATGATGGGAATGGGATGCACATGTGCAAATGCTTACATGTTTGGTTTTCTCACCGTTTAAGCTACA AGAGTAGCTTTTTTCAAAAGGGGTTTGGAGACCATGGGAAGCCAAACATGCTATATGTTGTAAGGGCTTTACCTTGTGTA GTCATGGATCATAATTGTTTTCTGAAAGTTCTGGATATGCCTTTTAAGTTTTCTAAAGTCCAAGTCACTAAGTATGCATT TGGGTGCGCATTTGTCAAATGTGAATTTGAAAGAACTGAAATTTTGTACAATTAGGTTGGTTAAAGTGGATTGAAGTATG CTATGAATCATAATTATTTTCTGAAAAATCTTGGATATGTCCCTAAGTTTTCTGAAGTTCAAGTCACTTAAGAGTTAAGT ATGTGTTTGGTGAGTTTGCTAAATGTGGTTTTGAATGGATTGAATTTTTTGTAGAATTAATTTGGTCCAGCTTGATTTAA AGTAAAATGATTTTAATTTGGATTTTATCTGCACAAAAGCTAGATAAAGCTACTTCTACCAAACATAGTTTAGTTTGATA CTGCAAATTCACAACCAAGCATGTGATAAACCATCAATAACATCCATAACCTTTGTTCCTGTCTGAGTACAATTTCTTAA AACATGTCTGGAAATGATTTTTCACTCTCTGTAATTTGCTGCAAAAAGAATGGTTCATATGACAAATTAACATGATCCCT TTGATGCAATATTTGTAGTATGAGTTTTTTATAAATGTTCTGTTACAGATAATTTTATTTTCTCCCCTTTGTAGAAGTTA GAGACTTAGAGCTTTTTTGAGCCCATTGGTTTACTCTCAGAAAGTATGAAAATGAGTAAATAACGCATTCATTCCTAACA CTTATAGTTGAAGTTGCAGGTTGTTACTTCAACAAGAAAGACATTGAAATGTGTTATTTTTCTGTTTTCATACTTTTTAA CCGTAAATAAAATAAACCCTATTTGTTTAATTGCTTGATATGTACTTAATCTCTGGCATTAACAGGGTATAGAGCAGGAA AGAAGAAAAAGAGAGAACCCAGAAGCCATGGAAGAAGATGAGACTGAAGAGGAGGTAGCTGAGATAAAACCAGCTCACTT TGAAGAGTCAATGAAGTTTGCTCGCCGGAGTGTCAGTGATGCTGACATCAGGAAATACCAGGTGTTTGCTCAGACCTTGC AACAGTCTCGTGGAATCGGAACGGAGTTTCGGTTTCCTGACCGAAATGAGAACACTGCAACAGCAACAGCCTCTGATCCT TTCTCGTCTGTTACCGCAGATGGAGAGGATGATCTCTACAGTTAA
CDS sequence (LotjaGi1g1v0177300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGCTTCAACTTTTCCGGGGTGACACGGTTCTGATAAAGGGAAAGAAGAGAAGGGACACAATATGCATTGTTCT TACTGATGAACTGTGTGATGAGCCAAAAATAAGGATGAATAAGGTTGTTCGGGCTAATCTTCGAGTGCGGCTTGGAGATG TTGTCTCTGTTCATCAATGTCCTGATGTCAAGTATGGGAGTCGAGTTCACATCCTTCCAATTGATGATACTATTGAGGGT GTCACTGGCAACTTGTTTGATGCATATCTAAAGCCATATTTTCTGGAGTCATACCGGCCAGTGAGGAAAGGGGACTTGTT CCTCGTTAGGGGCGGGATGCGAAGCGTTGAATTCAAAGTAATAGAGACTGATCCTGGAGAATACTGTATTGTGGCACCTG ATACTGAAATCTTCTGTGAGGGGGAACCCATCAAAAGGGAAGATGAGGAGAAATTGAATGAAGTTGGCTATGATGATGTT GGTGGTGTTAGGAAGCAAATGGCGCAAATTCGAGAGCTTGTAGAGCTTCCACTTAGACACCCGCAACTCTTCAAATCAAT TGGCGTTAAGCCCCCAAAAGGGATATTGCTTTATGGACCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTGGCTA ATGAGACAGGTGCATTCTTCTTTCTGATTAATGGACCCGAAATCATGTCGAAGCTGGCCGGTGAGAGCGAGAGCAATCTG AGGAAGGCGTTTGAAGAAGCTGAAAATAACTCCCCTTCCATCATTTTTATTGATGAGTTGGACTCGATTGCTCCCAAGAG AGAGAAGACACACGGTGAAGTGGAGAGGCGTATTGTTTCGCAGCTTTTAACTCTAATGGATGGCCTCAAGTCTCGATCGC ATGTTATTGTAATTGGAGCCACAAATAGGCCTAATAGTATTGATCCTGCTCTCAGAAGGTTCGGAAGGTTTGATCGGGAG ATTGACATCGGCACACCGGACGAAATTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAATATGAAACTTTCAGATAA TGTTGATCTTGAAAGAGTAGCTAGAGATACCCATGGTTATGTTGGAGCAGATCTTGCTTCTCTTTGCACAGAGGCTGCAC TGCAGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCCGAGGTGTTGAGTTCCATGGCT GTGACCAACGAACACTTCCAAACTGCTTTAGGTTCTTCAAACCCATCTGCCCTGCGCGAAACAGTTGTGGAGGTTCCAAA TGTTTCATGGGATGATATTGGAGGCTTAGAGAATGTCAAAAGGGAGCTTCAAGAGACTGTTCAATACCCAGTGGAACATC CTGAAAAGTTTGAGAAATTCGGCATGGCACCTTCCAAAGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTG TTAGCAAAAGCAATTGCTAATGAATGCCAAGCCAACTTCATAAGTGTCAAGGGCCCTGAGTTGCTGACAATGTGGTTTGG TGAAAGCGAGGCCAACGTTCGCGAAATATTTGATAAGGCCCGGGGATCAGCTCCATGTGTGCTTTTCTTTGATGAACTTG ACTCAATTGCAACCCAGCGAGGCAGTTCTGTAGGGGATGCTGGCGGTGCTGCAGATAGGGTGTTGAACCAACTATTAACA GAAATGGATGGTATGACTGCTAAGAAAACGGTTTTCATCATCGGCGCAACAAACAGACCAGACATCATAGACCCTGCATT GCTCAGGCCGGGACGATTGGACCAACTGATTTACATTCCTTTACCGGATGAAAGTTCACGCCTTCAAATCTTCAAGGCGT GTTTGAGGAAGTCGCCAATCTCTAAGGATGTTGACCTGGCTGCTCTGGCCCGTTACACTCAGGGATTTAGTGGTGCTGAT ATTACTGAAATTTGTCAACGAGCTTGCAAATATGCCATCAGAGAAGATATTGAAAAGGGTATAGAGCAGGAAAGAAGAAA AAGAGAGAACCCAGAAGCCATGGAAGAAGATGAGACTGAAGAGGAGGTAGCTGAGATAAAACCAGCTCACTTTGAAGAGT CAATGAAGTTTGCTCGCCGGAGTGTCAGTGATGCTGACATCAGGAAATACCAGGTGTTTGCTCAGACCTTGCAACAGTCT CGTGGAATCGGAACGGAGTTTCGGTTTCCTGACCGAAATGAGAACACTGCAACAGCAACAGCCTCTGATCCTTTCTCGTC TGTTACCGCAGATGGAGAGGATGATCTCTACAGTTAA
Protein sequence (LotjaGi1g1v0177300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKLQLFRGDTVLIKGKKRRDTICIVLTDELCDEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGSRVHILPIDDTIEG VTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCIVAPDTEIFCEGEPIKREDEEKLNEVGYDDV GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL RKAFEEAENNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVIGATNRPNSIDPALRRFGRFDRE IDIGTPDEIGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLASLCTEAALQCIREKMDVIDLEDETIDAEVLSSMA VTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTL LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT EMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLAALARYTQGFSGAD ITEICQRACKYAIREDIEKGIEQERRKRENPEAMEEDETEEEVAEIKPAHFEESMKFARRSVSDADIRKYQVFAQTLQQS RGIGTEFRFPDRNENTATATASDPFSSVTADGEDDLYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 750 | 750 | 0.0 | – | |
| PANTHER | 1 | 750 | 750 | 0.0 | – | |
| Pfam | 1 | 61 | 61 | 3.7E-16 | ||
| SMART | 1 | 63 | 63 | 1.9E-10 | ||
| SUPERFAMILY | 1 | 60 | 60 | 6.21E-18 | ||
| Gene3D | 1 | 62 | 62 | 4.3E-28 | – | |
| TIGRFAM | 2 | 718 | 717 | 3.6E-260 | ||
| SUPERFAMILY | 62 | 154 | 93 | 5.56E-34 | ||
| Gene3D | 63 | 158 | 96 | 1.8E-47 | – | |
| SMART | 80 | 146 | 67 | 9.7E-16 | ||
| Pfam | 82 | 145 | 64 | 9.1E-12 | ||
| SUPERFAMILY | 154 | 416 | 263 | 6.8E-68 | ||
| Gene3D | 159 | 324 | 166 | 2.2E-65 | – | |
| CDD | 161 | 324 | 164 | 7.06796E-32 | – | |
| SMART | 191 | 327 | 137 | 4.8E-25 | ||
| Pfam | 195 | 324 | 130 | 1.6E-47 | ||
| ProSitePatterns | 295 | 313 | 19 | - | ||
| Gene3D | 326 | 421 | 96 | 2.1E-33 | – | |
| Pfam | 347 | 388 | 42 | 2.3E-13 | ||
| Gene3D | 422 | 602 | 181 | 3.3E-74 | – | |
| SUPERFAMILY | 426 | 716 | 291 | 5.35E-76 | ||
| CDD | 434 | 601 | 168 | 6.21183E-31 | – | |
| SMART | 464 | 603 | 140 | 2.7E-24 | ||
| Pfam | 468 | 601 | 134 | 2.2E-46 | ||
| ProSitePatterns | 571 | 589 | 19 | - | ||
| Gene3D | 603 | 718 | 116 | 5.0E-42 | – | |
| Pfam | 623 | 664 | 42 | 3.9E-14 | ||
| MobiDBLite | 663 | 683 | 21 | - | – | |
| MobiDBLite | 724 | 758 | 35 | - | – | |
| MobiDBLite | 731 | 747 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi1g1v0177300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…