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LotjaGi5g1v0222800.1

Overview

Field Value
Gene ID LotjaGi5g1v0222800
Transcript ID LotjaGi5g1v0222800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase DeaD; TAIR: AT5G27680.1 RECQ helicase SIM; Swiss-Prot: sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM; TrEMBL-Plants: tr|G7I8P0|G7I8P0_MEDTR RecQ family ATP-dependent DNA helicase; Found in the gene: LotjaGi5g1v0222800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:52965660..52972189) extracted from Lotus japonicus Gifu genome v1.2.

CTTTCACAACACAAAGTCCTTTTGAGATTGTGAAATTGGCCTCTCGAAAATGAGTTATGGAGTGACTATCTTATTTAGAG AAGCCGAACCCAAATTAGATTTGGCGGGATTCTAACTTGGGAATCAGAACAGGAACATAGTTTCATTTCACTCCCTGATG AATCTCTGCTCTGCGATTTGCCTCAAAATCTCACAACACAAGCTAAGTTCAGGTGTAAATTTGAAAACTTGGTAGAACAA TCTTACAAGAGAAGAAACAACCACAGTGCTGGTTCAATTTTCCCCCAAAACACAAAAGGGGTTTACGTTTTCGTCAATTT TCAGCCATGGACGCCAACAACAACAACAACACATCTTCCGATCAAGTCATTGCAGAAATGGTTGAAATGGGTTTCCAGCA TTCCACCATTCTCGAAGCCATTGAAGCAGTAGGTCCATCGATTCGCAGCGCGGTGGAGCATATTTTCAAGACTACCACCA TTTCTAACCCTAACCCTAACCCTGAACCACCAACTCACACCTTCAAATCACGCAATGGGAATGCCCTGAATAAACAATCT TTGCCGTCGTCGTCGTCGCATCCGAAGCCAATTGATCATTATTTCAAACCCATTGGTAAAGTCAAGAGCAAGAAAAGTGA AAATGAGGTTGTTGTTAATGATGATGTAATGAGAGCTGAAGAGTTGGATGTAACATCTGATTGGGAGCAAAAATTCGAGA AAAGCGAGGTTGTTATTGCTGATGATGTAATGAGAACTGATCCTGATGTAGCATCTGATTGGGAGCACACAGTTAGCAAG TTGTTGCAAAAACATTTTGGGTTTTCAGCATTGAAAAGTTTTCAGAAGGAAGCACTAGCTGCTTGGGTTGCAAATGAAGA TTGTCTTGTTCTTGCTGCAACAGGATCTGGTTTTGTTCTTTCTCTCTGATTAATCTTGTGTGTTTCTTAGTAATTGTGTA TTTACTTACAGGAAGGTTTTTTCTATGCAGGTAAGTCTCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTG GTTGTGATCTCACCCTTGATAAGCTTGATGCAGGACCAGTGCTGGAAGCTAACAAAGCATGGGCTCAGTGCTTGCTTTCT CGGTTCTGGGCAACGTGATGATACTGTTGAAAGGAAAGCAATGAAGGGTGTGTACAGTATAATATATGTTTGCCCGGAGA CACTTCTGAGGTATGTATGGTTAGGGGCATTGAAGTCGGTTTTGTGTCTGAGAAGTCTTTGATTTAAGTATTTTTATGTC TGGTAACTACAACTGTCCTATGTAGATTGTTGCCACAGCTGCAGAAGCTTGCAAATGGCCGTGGAATTGCTTTATTCGCA ATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGCTTACAGGTTTGTTTTATGCATTCTATTTCC TTGTTGTTCATTATGGATCAATTTGTGTACAATACATAGAACATCTTAAAAGATGATATATCACCTGTGGTTTGTAAAGA AACTAAGATCAATTGCTAGATGATTTGGTTGATTACCACACATATCACTTTTTTGTTCTTTTGCATACCTCTAAATTTCC TAAATATCTTTATTCAACTGTCATATGTATGACCTGTTTTTAAATTTCTTCTCTTGTTGCAGAGAATTGTCTGTGTTAAG GGAAAGTTTCTGTACTAGCAGGATAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACTGCTACAAAGA GAGTTAGAGAAGACATTTTAGAATCACTATGCATGTCAAAAGGAACAAAAGTTGTTCTCACATCATTTTTTCGACCTAAT TTACGCTTCATGGTGAGTTTGCCCATGTTTAATCACTAAACTTGCATCTAACGACACCATCTTCTCGTTACTTTATAATG CTTAAAAATTACTATGGCTTCTATAGGTAAAGCATAGTAAAACATCACAAGTTTCTTATGAGAAAGATTTTCATGAATTG ATTAAGGAATATGGTAGAGAGCAAAACATTGGTGGAAATAAAGAAGCTTTCATCTCAGATGGTTCAGATGATAGTGGTTC AGATGCCAGAAGAAGCTCTGATACAGACAGTGTTTCTTCTCATGAATTGGATGACAACCAAGATAAGTATGATGACAGCA ATATTAATGTAATGCTTTCAGGAAACATAGACAATCTTCAAGAGCCTTTGCAACCAGGACCAGCAATCATATATGTGCCC ACCAGAAAAGAAACACTGAGAATCGCACAGTACCTATGCAAGTTTGGCGTGAAGGCTGCTGCTTACAATGCAGGGGTAAG GATTATATATTTTACTCAAACTTTTTAATTTATATGGCCGTTTAAATTTGTAATCAACTAAAATTTGTCAGGATGAGAAT CGTTAATTCTAAGACACCATGAAGTACTAACTACTAAGAAGGAGATTTTTATTTTTTGTTATTGTTCTTCCTGTTTTACT TTTAATCTATTTTGGCATGCACCATTGCATTTCATTGAACCAAACTCTGTAGTTACTTTGACATTACTATGTAAGTTTGC TGAGCTCATTTTCTTTCTCCAGCTTAACACGTCGCATCTAAGCAGGGTTCATAAAGAGTTTCATGACAATACTTTAGAGG TATGGATCCGGAGCCTGAACAAAATATATGTCTACATTTCAATGTCTTCCAACCTGAGTACTGTCATTTTTTTTCTTTGG GGGGGGGGGGGGAGTACTGTCAAGTTTGTATAGCTGTGGTGTGCTATTCACATGACAGTTATTATGAAAATAGAGGACAA GGTCCATGGAACTCTTTCATTAAAAGGAATTGAATAATACCCATTCGCTTTTTTTCCTGATTTTGATAGCTCTTTTCAGT TTGTGACTAGTTTTCATACTTAATGCACCCCACTCCATGTTTTTTTTTTACTTCAGCTTTTTCAACCCTGCACAACCTGT TATACATCTAAGCTTTGGTGTTTCTTCGTAATTATTTGTTAAGACATGGCTTTGAAATGTGTTTTTTTTCCACCTTGTTT ACCCCTATGTTGCCTGAAGAGTTCACTACATAATTTAAATTATTTCCTTATTCCAGAATCATCAACAGGTTTGACTAGAA ACAGTTATGCTTTTGTGTTTTACCATTTTCAGGTTGTAGTTGCAACAATAGCATTTGCAATGGGGATTGACAAATCGAAT GTCAGAAGAATCATCCACTATGGTTGGCCGCAGGTCTGTTTTTCAAATAATTTTTGCTGATATATTAATTAGATTTTAAG TTTGTCTTTTCTTGTGCATTCCATATTTTATGCTTTCACTTCCTGGATTGTCCATCTTTTTCTTTTGACATGCCTCAAAT AATCAAATATGTAATTTGATCATCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTA GCATGTTGCAGTAAGTTCAATTATACTATAATATAATTTTTTACATTGCGCATTTCTTTTGTTCTCGTCATTTTCTGTTG GATTTTAAATTCATGTTTATACCTTTATGTTCACATAATTAGTAGGCTCCTTATTTTTTAATTCTTCTGAGACACTTATA TCCTGTGTTTGTTCCCAATTTCACAACAAGTTCTATATGCAAACCTAGCAAGAAAGCCATCACTTTTGCCAAGTCGTAGA AGTGATGATCAGATAAAACAAGCATATATTTTGCTGTCTGATATTTTCAGGTTTGCTTTGATCAATACACCTTTATGTGT CTTTTCTTTTGTTTTATTTTAGTACAGAACCTTAATGTATATTTGTAGATATGGAATGAATACTTCACATTGTCGCGCAA AGACACTTGTTGAGTACTTTGGAGAAGATTTCAGTCAACAAAAATGTTGCTTGTACGTAGAGTTTGATCTCAAAGCCTTG CTTTCTTATTATGTTTAAGCATCTGTTTAAGTGAAAAATTATTCTAATATATGAGAAGCTTGAGACCCTGTGTGTATTTC TAATTCAACCAATAGTTGATACCGAATTACCTTTTTTTTGAAGCACTAACATACTTGTTTCCTCTTGTAATCATGGGATT ATTTTTCGAGTCATTTATGAACCTCCTTTCATGCAGATGTGATGTGTGCATTAATGGACCACCTCAAAGGCAGAATCTAA AAGAGGAGGCCTGTGTTTTACTGCAAACAATATGTGTCCATAATGTATGTCAAACGGTTTCAATTTATACCAATTAAACT TGCATTTCTGTCTTGTGAATTTATAATTATATCCAAATATTGACCCGGTGGGTGCTAGTCACAATGGTTAAAGTGACTAC TAGAACCACCAGATCAAAAGTTCGATCCTTAGGAGCTGCACTTTTGCCAATACCTTCAGCCTTCACCACACCCAGGTCGG AATTGTGAAAATGACTTGGTACACCCAAAAAATATTGACCCTTGTATTTTCATGGCATTCTTTCCAAAAGTCCTCTTCCT ACTCGTGTATTTTTTCTCTTTCTTGAGATTAAGTTTCAACATGATTAAATAAATGATCAAACAAAGGGTTTGAGAGCTCA AGTTTTGTGGAGGAATATTGTCACGGTCCATAGATTTGTATTTTCTATATTCCATAAGAGAAAAGAAACTGATGCAACAT GAACGCTAATTTTTCAGGCTTCTAGCTACTCCTTGGATCCTTCATATAATGATGATATCCACTTTGGCTCCAAAAGTAGA AGGCTAGAAAAGAGACCCAGTCTTATGAAGTTAGTTAGAAATATAAGGAAGCAGGTGAACCTACATATAATTGTCATCTC TCACTGTTTGTTATGTACTCATGTTGGGTATTCTATATTGTTGCTAATTCCTGTAACAATTTTTTGTTGTTTTCATATGT TGTGGCCATCTGCAGTTTCAAAAGTTTGTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAA AGGATACATCAAGGAAGGAGATGAGAAGGTATACTTGCTTTAACTAGATATAAGTTTAACCCATCCTTGTATATCAATAT TGCAAAAGCCTGTTCACAAATGTCATAATTGAAAAAGTGGGATTTGTTGCATCTGATGATTAAGAAATGATATATACATT TGAGAAGTGATCCTACAAAGGTAATTTAACATATAGACATAAACTGAGGATTGATAAAACATGTTTCTGCATTTAGTATT GAAGTAAGATTGAGCATTGGTAATTCCACTTTAATTTCATCTCAAGTTTTGCTCTATACAATTGCAGACCCATGTTCAGA TAAAATACCCCGAGGTAACAGAACTGGGAATGGAATTTCTGAAGTGTGAGCAAGCTTTTTATGAGTACCTTGAGGCTGAT ATGTTGTTTGCCAAGAAAACTAACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCG TCGCCAACGCTTGGAAGCAATGCGACTTGATAGAAATCCAATGCAGCGAGTTAGAAAGCAACCAAAGAGGAAGGTTAATA CACCTGATATAAAGACTTTACTAACATCAAAACTTTCAAAACATAAGTGATATGTATCTCATCTTTTTTATTGAAGTATA TAATTTACTCGTTGGCTCATAGAAGTAATTCATCCATGATGATCTTAATCTTATCATGATTAATAGTAAAATCATGAATG TGTTTTTAACTTTTTGTAAGAAAAAGAGGAACTGAGACACAACATAAGTTGTTCAACACCTAACTGGTAAAATTGGTGAT GACGGATTATATTGGCAGCATGTAAGGGGCACTAACACTTAGATATGTATTTTCCTACGCAGACAAGTAAGAAAAAGAAT AGAAAATTAATTCCTGTTGAAGTAATGTAGTAACCCCAAACCGAAGCAAAGCATAAGGATCAGCATTGTTTGACTCATAT ACCCCCACCCCAAGGATATGTTGAACCAAGAACACCATTCATGGCATTTGGCAACATCGTTTTCGCGGTAATAGGCTTCT CTGCATCGTTCATATTTTGTGTGCCGAACCTCAAAAGATGGCACACGAAACAACTGGCTGCACAAAAATTAAGAATCATC AGCGAGGCCTTGGAGGTGGCAGAAGAAAGAGTGATGAGATTCGAAGAAAGACATGACAGAATTTTGAGAGAAATAAGCGC ATGTTACTTGACCAATGCAGAAGTTGTTGAGGCACTAGCGGGTGCTCGAGCTACCATGAACCAGGCATTGGAGTTTGCTG TTGATTTGAGGACAATTCAGTACAAAATCATTGCCTCTTTCCCTGATGTAATCGATGTTCTTTAGGAATTAAGGATTCAA AAAACAAGAGGAGCTTGAATTGCTCTCAGTTTTTAAAGCTTGCTTAAGATGTTTCGGCATGTAATGTTCATTATACATCT TTATAGTCCTTGCATGTTACAATTTAGGAGTAAATAGTTGATCATGCGACTTTGTAAGATTTAAAGTTGAGTACTCAACT TCAACTTTACTATATAGAAGTGTATATCATCATTAATAATACATTAAGTG 

CDS sequence (LotjaGi5g1v0222800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACGCCAACAACAACAACAACACATCTTCCGATCAAGTCATTGCAGAAATGGTTGAAATGGGTTTCCAGCATTCCAC CATTCTCGAAGCCATTGAAGCAGTAGGTCCATCGATTCGCAGCGCGGTGGAGCATATTTTCAAGACTACCACCATTTCTA ACCCTAACCCTAACCCTGAACCACCAACTCACACCTTCAAATCACGCAATGGGAATGCCCTGAATAAACAATCTTTGCCG TCGTCGTCGTCGCATCCGAAGCCAATTGATCATTATTTCAAACCCATTGGTAAAGTCAAGAGCAAGAAAAGTGAAAATGA GGTTGTTGTTAATGATGATGTAATGAGAGCTGAAGAGTTGGATGTAACATCTGATTGGGAGCAAAAATTCGAGAAAAGCG AGGTTGTTATTGCTGATGATGTAATGAGAACTGATCCTGATGTAGCATCTGATTGGGAGCACACAGTTAGCAAGTTGTTG CAAAAACATTTTGGGTTTTCAGCATTGAAAAGTTTTCAGAAGGAAGCACTAGCTGCTTGGGTTGCAAATGAAGATTGTCT TGTTCTTGCTGCAACAGGATCTGGTAAGTCTCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGA TCTCACCCTTGATAAGCTTGATGCAGGACCAGTGCTGGAAGCTAACAAAGCATGGGCTCAGTGCTTGCTTTCTCGGTTCT GGGCAACGTGATGATACTGTTGAAAGGAAAGCAATGAAGGGTGTGTACAGTATAATATATGTTTGCCCGGAGACACTTCT GAGATTGTTGCCACAGCTGCAGAAGCTTGCAAATGGCCGTGGAATTGCTTTATTCGCAATTGATGAGGTGCATTGTGTTT CTAAATGGGGTCATGATTTCCGTCCAGCTTACAGAGAATTGTCTGTGTTAAGGGAAAGTTTCTGTACTAGCAGGATAAAA TCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACTGCTACAAAGAGAGTTAGAGAAGACATTTTAGAATCACT ATGCATGTCAAAAGGAACAAAAGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCATGGAATATGGTAGAGAGC AAAACATTGGTGGAAATAAAGAAGCTTTCATCTCAGATGGTTCAGATGATAGTGGTTCAGATGCCAGAAGAAGCTCTGAT ACAGACAGTGTTTCTTCTCATGAATTGGATGACAACCAAGATAAGTATGATGACAGCAATATTAATGTAATGCTTTCAGG AAACATAGACAATCTTCAAGAGCCTTTGCAACCAGGACCAGCAATCATATATGTGCCCACCAGAAAAGAAACACTGAGAA TCGCACAGTACCTATGCAAGTTTGGCGTGAAGGCTGCTGCTTACAATGCAGGGCTTAACACGTCGCATCTAAGCAGGGTT CATAAAGAGTTTCATGACAATACTTTAGAGGTTGTAGTTGCAACAATAGCATTTGCAATGGGGATTGACAAATCGAATGT CAGAAGAATCATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGA AATTAGCATGTTGCATTCTATATGCAAACCTAGCAAGAAAGCCATCACTTTTGCCAAGTCGTAGAAGTGATGATCAGATA AAACAAGCATATATTTTGCTGTCTGATATTTTCAGATATGGAATGAATACTTCACATTGTCGCGCAAAGACACTTGTTGA GTACTTTGGAGAAGATTTCAGTCAACAAAAATGTTGCTTATGTGATGTGTGCATTAATGGACCACCTCAAAGGCAGAATC TAAAAGAGGAGGCCTGTGTTTTACTGCAAACAATATGTGTCCATAATGCTTCTAGCTACTCCTTGGATCCTTCATATAAT GATGATATCCACTTTGGCTCCAAAAGTAGAAGGCTAGAAAAGAGACCCAGTCTTATGAAGTTAGTTAGAAATATAAGGAA GCAGTTTCAAAAGTTTGTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCA AGGAAGGAGATGAGAAGACCCATGTTCAGATAAAATACCCCGAGGTAACAGAACTGGGAATGGAATTTCTGAAGTGTGAG CAAGCTTTTTATGAGTACCTTGAGGCTGATATGTTGTTTGCCAAGAAAACTAACAAACCATATTCCTCATTCTCAGAATG GGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAACGCTTGGAAGCAATGCGACTTGATAGAAATCCAATGCAGCGAG TTAGAAAGCAACCAAAGAGGAAGACAAGTAAGAAAAAGAATAGAAAATTAATTCCTGTTGAAGTAATGTAG 

Protein sequence (LotjaGi5g1v0222800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDANNNNNTSSDQVIAEMVEMGFQHSTILEAIEAVGPSIRSAVEHIFKTTTISNPNPNPEPPTHTFKSRNGNALNKQSLP SSSSHPKPIDHYFKPIGKVKSKKSENEVVVNDDVMRAEELDVTSDWEQKFEKSEVVIADDVMRTDPDVASDWEHTVSKLL QKHFGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMQDQCWKLTKHGLSACFLGS GQRDDTVERKAMKGVYSIIYVCPETLLRLLPQLQKLANGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSRIK SLKFDIPLMALTATATKRVREDILESLCMSKGTKVVLTSFFRPNLRFMEYGREQNIGGNKEAFISDGSDDSGSDARRSSD TDSVSSHELDDNQDKYDDSNINVMLSGNIDNLQEPLQPGPAIIYVPTRKETLRIAQYLCKFGVKAAAYNAGLNTSHLSRV HKEFHDNTLEVVVATIAFAMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLACCILYANLARKPSLLPSRRSDDQI KQAYILLSDIFRYGMNTSHCRAKTLVEYFGEDFSQQKCCLCDVCINGPPQRQNLKEEACVLLQTICVHNASSYSLDPSYN DDIHFGSKSRRLEKRPSLMKLVRNIRKQFQKFVTTDILWWRGLARILEVKGYIKEGDEKTHVQIKYPEVTELGMEFLKCE QAFYEYLEADMLFAKKTNKPYSSFSEWGKGWADPEIRRQRLEAMRLDRNPMQRVRKQPKRKTSKKKNRKLIPVEVM 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 3 51 49 8.5E-6
PANTHER 9 784 776 0.0
SUPERFAMILY 9 53 45 3.83E-5
ProSiteProfiles 9 49 41 10.667
PANTHER 9 784 776 0.0
MobiDBLite 50 96 47 -
MobiDBLite 63 85 23 -
SUPERFAMILY 91 294 204 2.39E-7
Gene3D 128 361 234 3.5E-71
CDD 158 360 203 5.3763E-83
TIGRFAM 159 627 469 2.6E-113
SMART 165 370 206 6.9E-28
Pfam 172 339 168 1.2E-18
ProSiteProfiles 177 353 177 22.002
SUPERFAMILY 208 543 336 1.66E-47
MobiDBLite 379 418 40 -
MobiDBLite 390 417 28 -
Gene3D 412 541 130 2.8E-32
ProSiteProfiles 428 571 144 16.031
Pfam 434 532 99 5.2E-15
CDD 439 541 103 3.9359E-45
SMART 452 533 82 3.7E-21
Gene3D 547 733 187 8.1E-23
Pfam 557 604 48 2.5E-8
MobiDBLite 767 796 30 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Biological process DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0222800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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