Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj0g3v0332939 |
| Transcript ID | Lj0g3v0332939.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Somatic embryogenesis receptor kinase [Medicago truncatula] gi|357458087|ref|XP_003599324.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 804 | 804 | 2.40E-199 | ||
| SignalP | 1 | 24 | 24 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 15 | 12 | – | – | |
| PANTHER | 8 | 421 | 414 | 0 | – | |
| PANTHER | 8 | 421 | 414 | 0 | – | |
| Phobius | 16 | 26 | 11 | – | – | |
| ProSiteProfiles | 20 | 143 | 124 | 15.714 | ||
| SMART | 26 | 147 | 122 | 1.10E-22 | ||
| Phobius | 27 | 457 | 431 | – | – | |
| Gene3D | 32 | 150 | 119 | 2.00E-25 | ||
| CDD | 35 | 147 | 113 | 2.16E-23 | – | |
| Pfam | 71 | 164 | 94 | 7.70E-27 | ||
| SUPERFAMILY | 72 | 165 | 94 | 3.01E-25 | ||
| Gene3D | 151 | 272 | 122 | 4.80E-05 | ||
| Pfam | 246 | 317 | 72 | 5.10E-07 | ||
| CDD | 331 | 420 | 90 | 3.16E-14 | – | |
| ProSiteProfiles | 335 | 420 | 86 | 8.156 | ||
| Pfam | 346 | 401 | 56 | 1.90E-05 | ||
| Gene3D | 350 | 402 | 53 | 5.90E-05 | – | |
| PANTHER | 443 | 801 | 359 | 0 | – | |
| PANTHER | 443 | 801 | 359 | 0 | – | |
| Gene3D | 448 | 527 | 80 | 1.00E-11 | ||
| Phobius | 458 | 481 | 24 | – | – | |
| TMHMM | 460 | 482 | 23 | – | – | |
| Phobius | 482 | 804 | 323 | – | – | |
| SUPERFAMILY | 495 | 798 | 304 | 4.71E-73 | ||
| SMART | 514 | 799 | 286 | 3.30E-33 | ||
| ProSiteProfiles | 514 | 804 | 291 | 37.785 | ||
| Pfam | 517 | 795 | 279 | 1.30E-52 | ||
| ProSitePatterns | 520 | 542 | 23 | – | ||
| CDD | 520 | 798 | 279 | 7.18E-85 | – | |
| Gene3D | 528 | 579 | 52 | 3.20E-21 | – | |
| Gene3D | 580 | 800 | 221 | 5.60E-44 | – | |
| ProSitePatterns | 634 | 646 | 13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | Protein serine/threonine kinase activity | Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. | ||
| Biological process | Recognition of pollen | The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. |
Expression pattern of Lj0g3v0332939.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj0g3v0332939.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.