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Lj1g3v4591200.1

Overview

Field Value
Gene ID Lj1g3v4591200
Transcript ID Lj1g3v4591200.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi|356505252|ref|XP_003521406.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
47 86 40 – –
PANTHER
PTHR11476:SF5
70 488 419 9.90E-219 –
PANTHER
PTHR11476
70 488 419 9.90E-219
IPR004516
PIRSF
PIRSF001549
73 488 416 2.70E-141
IPR004516
Hamap
MF_00127
75 488 414 24.15
IPR015807
Gene3D
G3DSA:3.30.930.10
77 267 191 6.20E-85 –
SUPERFAMILY
SSF55681
79 400 322 2.59E-73 –
TIGRFAM
TIGR00442
79 488 410 1.10E-101
IPR015807
Pfam
PF13393
82 386 305 1.80E-45 –
ProSiteProfiles
PS50862
82 403 322 13.525
IPR006195
CDD
cd00773
90 397 308 4.48E-91 –
CDD
cd00093
271 329 59 0.00758832 –
Coils
Coil
299 319 21 – –
Gene3D
G3DSA:3.30.930.10
311 403 93 6.20E-85 –
SUPERFAMILY
SSF52954
409 488 80 1.47E-14
IPR004154
Gene3D
G3DSA:3.40.50.800
409 488 80 1.30E-14
IPR004154
Pfam
PF03129
413 488 76 2.40E-07
IPR004154

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004821
Molecular function Histidine-tRNA ligase activity Catalysis of the reaction: ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006427
Biological process Histidyl-tRNA aminoacylation The process of coupling histidine to histidyl-tRNA, catalyzed by histidyl-tRNA synthetase. The histidyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3''-OH group of a histidine-accetping tRNA.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj1g3v4591200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4591200.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.