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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1011060 |
| Transcript ID | Lj3g3v1011060.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ABC transporter B family member [Medicago truncatula] gi|357474799|ref|XP_003607685.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 45 | 45 | – | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| SUPERFAMILY | 7 | 325 | 319 | 1.57E-45 | ||
| Gene3D | 7 | 324 | 318 | 3.00E-43 | – | |
| Phobius | 16 | 27 | 12 | – | – | |
| Pfam | 18 | 292 | 275 | 5.90E-43 | ||
| ProSiteProfiles | 19 | 308 | 290 | 35.328 | ||
| Phobius | 28 | 45 | 18 | – | – | |
| Phobius | 46 | 60 | 15 | – | – | |
| TMHMM | 61 | 83 | 23 | – | – | |
| Phobius | 61 | 84 | 24 | – | – | |
| Phobius | 85 | 144 | 60 | – | – | |
| Phobius | 145 | 164 | 20 | – | – | |
| TMHMM | 157 | 179 | 23 | – | – | |
| Phobius | 165 | 169 | 5 | – | – | |
| Phobius | 170 | 189 | 20 | – | – | |
| Phobius | 190 | 684 | 495 | – | – | |
| SUPERFAMILY | 334 | 581 | 248 | 1.49E-88 | ||
| CDD | 343 | 581 | 239 | 4.01E-144 | – | |
| Gene3D | 343 | 575 | 233 | 1.80E-83 | ||
| ProSiteProfiles | 343 | 579 | 237 | 24.837 | ||
| Pfam | 361 | 510 | 150 | 5.70E-33 | ||
| SMART | 370 | 562 | 193 | 9.90E-18 | ||
| PANTHER | 476 | 1255 | 780 | 0 | – | |
| PANTHER | 476 | 1255 | 780 | 0 | – | |
| ProSitePatterns | 482 | 496 | 15 | – | ||
| SUPERFAMILY | 672 | 992 | 321 | 6.28E-55 | ||
| Gene3D | 673 | 990 | 318 | 2.50E-51 | – | |
| Phobius | 685 | 710 | 26 | – | – | |
| ProSiteProfiles | 686 | 973 | 288 | 41.154 | ||
| Pfam | 687 | 958 | 272 | 2.60E-47 | ||
| Phobius | 711 | 729 | 19 | – | – | |
| TMHMM | 730 | 752 | 23 | – | – | |
| Phobius | 730 | 752 | 23 | – | – | |
| Phobius | 753 | 807 | 55 | – | – | |
| TMHMM | 806 | 828 | 23 | – | – | |
| Phobius | 808 | 826 | 19 | – | – | |
| Phobius | 827 | 831 | 5 | – | – | |
| Phobius | 832 | 851 | 20 | – | – | |
| TMHMM | 832 | 851 | 20 | – | – | |
| Phobius | 852 | 908 | 57 | – | – | |
| Phobius | 909 | 932 | 24 | – | – | |
| TMHMM | 910 | 932 | 23 | – | – | |
| Phobius | 933 | 946 | 14 | – | – | |
| TMHMM | 947 | 966 | 20 | – | – | |
| Phobius | 947 | 965 | 19 | – | – | |
| Phobius | 966 | 1255 | 290 | – | – | |
| SUPERFAMILY | 1004 | 1248 | 245 | 7.37E-87 | ||
| ProSiteProfiles | 1009 | 1245 | 237 | 24.31 | ||
| CDD | 1009 | 1248 | 240 | 6.43E-139 | – | |
| Gene3D | 1009 | 1234 | 226 | 5.10E-80 | ||
| Pfam | 1028 | 1176 | 149 | 1.70E-34 | ||
| SMART | 1036 | 1228 | 193 | 9.20E-14 | ||
| ProSitePatterns | 1148 | 1162 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v1011060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1011060.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.