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Lj3g3v3627890.1

Overview

Field Value
Gene ID Lj3g3v3627890
Transcript ID Lj3g3v3627890.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] gi|356543424|ref|XP_003540160.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 497 497 – –
PANTHER
PTHR11946
10 697 688 0 –
PANTHER
PTHR11946:SF78
10 697 688 0 –
Gene3D
G3DSA:3.40.50.620
15 120 106 4.40E-58
IPR014729
SUPERFAMILY
SSF52374
15 152 138 9.27E-92 –
CDD
cd00814
17 387 371 4.32E-156
IPR033911
Pfam
PF09334
18 412 395 9.30E-148
IPR015413
TIGRFAM
TIGR00398
18 538 521 3.60E-166
IPR014758
PRINTS
PR01041
20 33 14 1.30E-31
IPR033911
ProSitePatterns
PS00178
25 36 12 –
IPR001412
PRINTS
PR01041
53 67 15 1.30E-31
IPR033911
PRINTS
PR01041
101 112 12 1.30E-31
IPR033911
Gene3D
G3DSA:2.170.220.10
121 271 151 6.70E-37 –
MobiDBLite
mobidb-lite
160 181 22 – –
SUPERFAMILY
SSF52374
189 397 209 9.27E-92 –
PRINTS
PR01041
269 280 12 1.30E-31
IPR033911
Gene3D
G3DSA:3.40.50.620
272 385 114 4.40E-58
IPR014729
PRINTS
PR01041
304 319 16 1.30E-31
IPR033911
Gene3D
G3DSA:1.10.730.10
388 573 186 4.80E-38
IPR009080
CDD
cd07957
396 532 137 1.34E-31 –
PRINTS
PR01041
399 410 12 1.30E-31
IPR033911
SUPERFAMILY
SSF47323
404 587 184 2.62E-32
IPR009080
Phobius
TRANSMEMBRANE
498 521 24 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
522 802 281 – –
MobiDBLite
mobidb-lite
608 634 27 – –
CDD
cd02799
639 743 105 4.46E-61 –
ProSiteProfiles
PS50886
640 743 104 31.083
IPR002547
SUPERFAMILY
SSF50249
641 801 161 1.71E-46
IPR012340
Gene3D
G3DSA:2.40.50.140
642 798 157 6.00E-48 –
Pfam
PF01588
646 740 95 1.90E-30
IPR002547

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004825
Molecular function Methionine-tRNA ligase activity Catalysis of the reaction: ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of
GO:0006431
Biological process Methionyl-tRNA aminoacylation The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. The methionyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a methionine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v3627890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3627890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.