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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0037550 |
| Transcript ID | Lj4g3v0037550.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 34 | 34 | 9.20E-185 | – | |
| Phobius | 1 | 25 | 25 | – | – | |
| PANTHER | 1 | 34 | 34 | 9.20E-185 | – | |
| Phobius | 26 | 54 | 29 | – | – | |
| TMHMM | 33 | 55 | 23 | – | – | |
| Pfam | 54 | 162 | 109 | 2.20E-53 | ||
| Phobius | 55 | 113 | 59 | – | – | |
| PANTHER | 59 | 273 | 215 | 9.20E-185 | – | |
| PANTHER | 59 | 273 | 215 | 9.20E-185 | – | |
| Phobius | 114 | 135 | 22 | – | – | |
| TMHMM | 118 | 140 | 23 | – | – | |
| Phobius | 136 | 275 | 140 | – | – | |
| MobiDBLite | 174 | 218 | 45 | – | – | |
| SUPERFAMILY | 211 | 271 | 61 | 3.32E-18 | ||
| Gene3D | 215 | 271 | 57 | 1.70E-17 | ||
| ProSiteProfiles | 219 | 271 | 53 | 9.597 | ||
| SMART | 221 | 269 | 49 | 1.30E-10 | ||
| CDD | 222 | 271 | 50 | 1.81E-29 | – | |
| ProSitePatterns | 222 | 268 | 47 | – | ||
| Pfam | 222 | 270 | 49 | 1.20E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of Lj4g3v0037550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0037550.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.