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Lj4g3v2215340.1

Overview

Field Value
Gene ID Lj4g3v2215340
Transcript ID Lj4g3v2215340.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA repair protein RAD51 homolog 1-like [Cicer arietinum] gi|502150634|ref|XP_004508049.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 24 24 – –
PIRSF
PIRSF005856
11 342 332 2.70E-133
IPR016467
SUPERFAMILY
SSF47794
20 87 68 2.35E-16
IPR010995
PANTHER
PTHR22942:SF45
24 342 319 7.90E-261 –
PANTHER
PTHR22942
24 342 319 7.90E-261 –
Gene3D
G3DSA:1.10.150.20
26 96 71 1.10E-30 –
TIGRFAM
TIGR02239
28 342 315 6.60E-174
IPR011941
Pfam
PF14520
32 80 49 2.30E-06 –
Pfam
PF08423
87 339 253 7.80E-124
IPR013632
ProSiteProfiles
PS50162
101 272 172 44.533
IPR020588
Gene3D
G3DSA:3.40.50.300
102 341 240 1.50E-87
IPR027417
SUPERFAMILY
SSF52540
104 341 238 3.79E-57
IPR027417
CDD
cd01123
105 338 234 7.31E-133
IPR033925
SMART
SM00382
122 309 188 4.00E-07
IPR003593
ProSiteProfiles
PS50163
279 342 64 15.822
IPR020587

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000150
Molecular function Recombinase activity Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
Subterm of
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0000724
Biological process Double-strand break repair via homologous recombination The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003690
Molecular function Double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
Subterm of
GO:0003697
Molecular function Single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006259
Biological process DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of
GO:0008094
Molecular function DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
Subterm of
GO:1990426
Biological process Mitotic recombination-dependent replication fork processing Replication fork processing that includes recombination between DNA near the arrested fork and homologous sequences. Proteins involved in homologous recombination are required for replication restart.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v2215340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2215340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.