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Lj4g3v3020560.1

Overview

Field Value
Gene ID Lj4g3v3020560
Transcript ID Lj4g3v3020560.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22594:SF34
11 208 198 1.30E-273 –
PANTHER
PTHR22594
11 208 198 1.30E-273
IPR018150
Hamap
MF_00534
32 567 536 42.323
IPR004522
SUPERFAMILY
SSF50249
42 130 89 8.08E-09
IPR012340
TIGRFAM
TIGR00457
45 566 522 5.20E-170
IPR004522
Gene3D
G3DSA:2.40.50.140
46 132 87 1.10E-08 –
Pfam
PF01336
51 126 76 7.90E-08
IPR004365
CDD
cd04318
51 130 80 1.26E-24 –
Gene3D
G3DSA:3.30.930.10
137 207 71 9.60E-113 –
CDD
cd00776
143 563 421 4.74E-144 –
SUPERFAMILY
SSF55681
146 209 64 3.85E-93 –
Pfam
PF00152
147 212 66 5.00E-12
IPR004364
Gene3D
G3DSA:1.10.287.10
230 276 47 1.70E-06
IPR009068
ProSiteProfiles
PS51185
231 287 57 10.652
IPR000738
SMART
SM00991
235 292 58 4.10E-04
IPR000738
Pfam
PF00458
239 278 40 6.60E-07
IPR000738
Coils
Coil
249 279 31 – –
Pfam
PF00152
296 560 265 2.80E-64
IPR004364
PANTHER
PTHR22594:SF34
297 567 271 1.30E-273 –
PANTHER
PTHR22594
297 567 271 1.30E-273
IPR018150
Gene3D
G3DSA:3.30.930.10
298 566 269 9.60E-113 –
SUPERFAMILY
SSF55681
298 562 265 3.85E-93 –
PRINTS
PR01042
306 318 13 1.00E-12
IPR002312
PRINTS
PR01042
322 335 14 1.00E-12
IPR002312
ProSiteProfiles
PS50862
324 557 234 13.819
IPR006195
PRINTS
PR01042
482 498 17 1.00E-12
IPR002312
PRINTS
PR01042
522 536 15 1.00E-12
IPR002312

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004816
Molecular function Asparagine-tRNA ligase activity Catalysis of the reaction: L-asparagine + ATP + tRNA(Asn) = AMP + Asn-tRNA(Asn) + diphosphate + 2 H(+).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of
GO:0006421
Biological process Asparaginyl-tRNA aminoacylation The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. The asparaginyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of an asparagine-accetping tRNA.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj4g3v3020560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3020560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.