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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1303360 |
| Transcript ID | Lj5g3v1303360.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357441259|ref|XP_003590907.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| PANTHER | 1 | 123 | 123 | 0 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 1 | 123 | 123 | 0 | – | |
| Phobius | 12 | 20 | 9 | – | – | |
| Phobius | 21 | 26 | 6 | – | – | |
| Phobius | 27 | 736 | 710 | – | – | |
| Pfam | 33 | 72 | 40 | 8.60E-08 | ||
| Gene3D | 35 | 334 | 300 | 4.60E-78 | ||
| SUPERFAMILY | 51 | 400 | 350 | 2.21E-64 | ||
| SMART | 100 | 124 | 25 | 53 | ||
| SMART | 148 | 172 | 25 | 14 | ||
| PANTHER | 183 | 388 | 206 | 0 | – | |
| PANTHER | 183 | 388 | 206 | 0 | – | |
| SMART | 244 | 268 | 25 | 120 | ||
| SMART | 292 | 316 | 25 | 64 | ||
| SUPERFAMILY | 321 | 696 | 376 | 8.63E-64 | – | |
| Gene3D | 351 | 692 | 342 | 3.80E-72 | ||
| SMART | 364 | 387 | 24 | 26 | ||
| SMART | 388 | 412 | 25 | 27 | ||
| PANTHER | 451 | 1071 | 621 | 0 | – | |
| PANTHER | 451 | 1071 | 621 | 0 | – | |
| SMART | 484 | 508 | 25 | 230 | ||
| SMART | 509 | 531 | 23 | 310 | ||
| SMART | 532 | 556 | 25 | 75 | ||
| Pfam | 534 | 593 | 60 | 1.60E-07 | ||
| SMART | 580 | 604 | 25 | 260 | ||
| SMART | 653 | 676 | 24 | 81 | ||
| Gene3D | 693 | 804 | 112 | 3.40E-06 | ||
| TMHMM | 737 | 759 | 23 | – | – | |
| Phobius | 737 | 757 | 21 | – | – | |
| Phobius | 758 | 1090 | 333 | – | – | |
| SUPERFAMILY | 778 | 1071 | 294 | 7.15E-75 | ||
| ProSiteProfiles | 801 | 1073 | 273 | 37.587 | ||
| SMART | 801 | 1071 | 271 | 6.20E-29 | ||
| Pfam | 802 | 1069 | 268 | 1.30E-47 | ||
| Gene3D | 805 | 864 | 60 | 8.10E-21 | – | |
| ProSitePatterns | 807 | 830 | 24 | – | ||
| Gene3D | 865 | 1079 | 215 | 4.80E-44 | – | |
| ProSitePatterns | 921 | 933 | 13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of Lj5g3v1303360.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1303360.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.