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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0198100 |
| Transcript ID | LotjaGi1g1v0198100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr|K7KMT9|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi1g1v0198100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:41024488..41027221) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCTGGTATCAATCAATGTGTCACCATAAGCCAATATCCACAGGGGATGTGTCCTTCCAAAATACCAAAACAAAAGTG AGGCAGAAAGAGGATAGGAAAACTGATATGTATTTGAGGTCCTCCTTCTTCCACCCACGCAACACAACGCAATAACATAA CATTAACCAAGTTCCCATCTTCAATTCTCTCCTCAATTAGCCATGGCCGTTTCAATTTCTTCTTCTTCTTCTTCAGTAAC AGCAGCAGTTTCATCAAAACTAGCAACCCAACCTCCACATGCATTTTCCACTTCCATTTCCACCACCAACCACAAGCTAA TTACCCGCCTCTCCTCCTCATTCCTGAACTCCTCCACCATCCTCCACGTCACCCCCTCCTCCTCCGCCCGCCGCAACCGC TCTTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGGAAGAAGCCCCACGTGAACATCGGCACAATCGGCCACGT CGACCACGGCAAGACCACCCTGACCGCCGCCCTCACCATGGCGCTCGCCTCCCTCGGCAACAGCGCCCCCAAGAAGTACG ACGAGATCGACGCTGCCCCTGAAGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGACG CGCCACTACGCACACGTCGACTGCCCTGGTCACGCCGATTATGTCAAGAACATGATCACTGGTGCCGCCCAGATGGACGG CGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAAACCAAAGAACACATCCTCCTAGCCAAACAGGTCCGTC AATCCAGTAATTCTTTTTTACATTAATCATGATTTAAAAAAAGTTAAATTTCTGGTAAAATATAATTAAAAATTACAGTA ATGCTATTTTTTAGGGAAATAACAATTAAGGTGATACAAATATATCAACCAATCAAATTTATTCACGCATAGCGATTTGT ATTTGACATTTTCTCTAGCAACCCATGTAAAAGTAGAAGGTTTCATACTTTTACACTTAATCTGTCATTATCTCTTTTAT AACAAATTTTTATAATTTATAATTTAGTTATTTATACTCTAAATAATAGAATGAAAGGTTTCATACTTTTAGGCATGATT TCTTTTATAAAGAACTCTAATGAACTGAATGGTTCTAAAACCTTTGGATTTTTTAAAAAGGGCTGCTGCTATAAAACTCT CGGAACATGGAGGGACCTGACTTTGTGGATCCAAAGTAAATTGTAAAACAAAATAAAAATTTCCTATGTTCTCCTGATTG GTAGTGCTCCGGTAAACATAAACTCAGTGCATTAACATGAGAATTCGTTGCAGGTTGGTGTCCCTAACGTGGTTGTCTTC CTTAACAAGCAAGACCAGGTTGACGACGAGGAGCTCCTTGAGCTCGTGGAGCTCGAGGTCCGGGAGCTTCTCTCCTCCTA CGAGTTTCCCGGTGATGACATCCCCATCACCTCTGGCTCCGCCCTCCTCGCCCTGGAAGCTCTCATGGCCAACCCTGCCA TCAAGCGTGGTGAGAACGATTGGGTCGACAAGATTTACCAGCTCATGGACAATGTTGATAGCTACATCCCCATCCCTCAG CGCCAGACCGACCTCCCCTTCCTCCTTGCCATTGAGGATGTGTTCTCCATCACCGGTCGTGGGACCGTTGCCACAGGGAG GATTGAGAGGGGCACCATCAAAGTCGGTGACGTCGTCGACCTTGTCGGATTAAGAGAAACCAGGAACACCACCGTCACCG GAGTTGAGATGTTCCAGAAGATTCTTGACGACGCAATGGCTGGGGACAATGTGGGGTTGTTGCTGAGGGGTATTCAGAAG ATTGATATTCAGAGAGGGATGGTTTTGGCCAAGCCTGGAACCATCACACCTCACACTAAGTTTGATGCAATTGTGTATAT TCTGAAGAAGGAAGAAGGTGGGAGACACTCACCTTTCTTTGCAGGGTACAGGCCTCAGTTCTATATGAGAACCACTGATG TTACTGGCAAGGTCACTGCCATCATGAACGATAAGGATGAAGAGTCCAAGATGGTGATGCCCGGTGACCGGGTTAAGATG GTGGTGGAACTCATCGTCCCGGTGGCGTGTGAGCAAGGAATGAGGTTTGCTATTAGGGAAGGAGGGAAGACTGTTGGAGC TGGTGTTATCCAATCTATCATTGAGTGATTCATAATTTCATAGCTATGCAGCCCCATCACTCTTAAAAGTTTAAAATTTT TTAATGAGGGAAGACCGTTAGTTAATTAATTGTTGCAATTAATTTCACACAACTTCTGCTGCATTCCCATTTCTTATATG GGTTCTGTTCGGTAACTGATGCTGATCAAGGAGAACAGAGTAGAAAGATGGAAACAAAAAAAATAATACATTTTTGTTAC ATTTTTCAAGTAGAACCAGAATGATATTACAAAGCAATCCTGTTCTTATTGTGTATTAAAATTCAGCAGGGTTTCCTTGA ATTTTATGTTTAGTTAGGTTGGATGGTATTTTTCTATCTAAATGCTGTGGTTACTCCTTCTCTTTTGCGGTGGAGATACT TGATCAAGATTGCTGAAATTGCATCAGAGGATAAGGTTTCTATTGAGGATGAGCAGTGACTGGCTTTCTTGTTATTAGAC TAGGTTTGATACATTCAAACGTAGGGGCATGTTTGATTAGTGTTCTATAAAACAATTGTCAATTTTTTTAAAATAGAAAA AGAAAGAAAACAAC
CDS sequence (LotjaGi1g1v0198100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGTTTCAATTTCTTCTTCTTCTTCTTCAGTAACAGCAGCAGTTTCATCAAAACTAGCAACCCAACCTCCACATGC ATTTTCCACTTCCATTTCCACCACCAACCACAAGCTAATTACCCGCCTCTCCTCCTCATTCCTGAACTCCTCCACCATCC TCCACGTCACCCCCTCCTCCTCCGCCCGCCGCAACCGCTCTTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGG AAGAAGCCCCACGTGAACATCGGCACAATCGGCCACGTCGACCACGGCAAGACCACCCTGACCGCCGCCCTCACCATGGC GCTCGCCTCCCTCGGCAACAGCGCCCCCAAGAAGTACGACGAGATCGACGCTGCCCCTGAAGAGCGCGCCCGCGGCATCA CCATCAACACCGCCACCGTCGAGTACGAGACCGAGACGCGCCACTACGCACACGTCGACTGCCCTGGTCACGCCGATTAT GTCAAGAACATGATCACTGGTGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCCATGCCCCA AACCAAAGAACACATCCTCCTAGCCAAACAGGTTGGTGTCCCTAACGTGGTTGTCTTCCTTAACAAGCAAGACCAGGTTG ACGACGAGGAGCTCCTTGAGCTCGTGGAGCTCGAGGTCCGGGAGCTTCTCTCCTCCTACGAGTTTCCCGGTGATGACATC CCCATCACCTCTGGCTCCGCCCTCCTCGCCCTGGAAGCTCTCATGGCCAACCCTGCCATCAAGCGTGGTGAGAACGATTG GGTCGACAAGATTTACCAGCTCATGGACAATGTTGATAGCTACATCCCCATCCCTCAGCGCCAGACCGACCTCCCCTTCC TCCTTGCCATTGAGGATGTGTTCTCCATCACCGGTCGTGGGACCGTTGCCACAGGGAGGATTGAGAGGGGCACCATCAAA GTCGGTGACGTCGTCGACCTTGTCGGATTAAGAGAAACCAGGAACACCACCGTCACCGGAGTTGAGATGTTCCAGAAGAT TCTTGACGACGCAATGGCTGGGGACAATGTGGGGTTGTTGCTGAGGGGTATTCAGAAGATTGATATTCAGAGAGGGATGG TTTTGGCCAAGCCTGGAACCATCACACCTCACACTAAGTTTGATGCAATTGTGTATATTCTGAAGAAGGAAGAAGGTGGG AGACACTCACCTTTCTTTGCAGGGTACAGGCCTCAGTTCTATATGAGAACCACTGATGTTACTGGCAAGGTCACTGCCAT CATGAACGATAAGGATGAAGAGTCCAAGATGGTGATGCCCGGTGACCGGGTTAAGATGGTGGTGGAACTCATCGTCCCGG TGGCGTGTGAGCAAGGAATGAGGTTTGCTATTAGGGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATCCAATCTATCATT GAGTGA
Protein sequence (LotjaGi1g1v0198100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSISSSSSSVTAAVSSKLATQPPHAFSTSISTTNHKLITRLSSSFLNSSTILHVTPSSSARRNRSSFTVRAARGKFER KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADY VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDI PITSGSALLALEALMANPAIKRGENDWVDKIYQLMDNVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRIERGTIK VGDVVDLVGLRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFDAIVYILKKEEGG RHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSII E
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| PANTHER | 48 | 481 | 434 | 4.4E-285 | – | |
| PANTHER | 48 | 481 | 434 | 4.4E-285 | – | |
| Hamap | 73 | 481 | 409 | 58.814 | ||
| Gene3D | 74 | 285 | 212 | 3.2E-67 | – | |
| TIGRFAM | 74 | 481 | 408 | 5.9E-225 | ||
| SUPERFAMILY | 80 | 308 | 229 | 4.5E-58 | ||
| Pfam | 82 | 283 | 202 | 5.6E-56 | ||
| ProSiteProfiles | 82 | 286 | 205 | 56.942 | ||
| CDD | 83 | 285 | 203 | 2.17155E-118 | ||
| TIGRFAM | 85 | 220 | 136 | 1.9E-15 | ||
| PRINTS | 86 | 99 | 14 | 2.4E-24 | ||
| ProSitePatterns | 123 | 138 | 16 | - | ||
| PRINTS | 130 | 138 | 9 | 2.4E-24 | ||
| PRINTS | 150 | 160 | 11 | 2.4E-24 | ||
| PRINTS | 166 | 177 | 12 | 2.4E-24 | ||
| PRINTS | 203 | 212 | 10 | 2.4E-24 | ||
| SUPERFAMILY | 287 | 383 | 97 | 1.9E-29 | ||
| Gene3D | 288 | 382 | 95 | 5.1E-36 | – | |
| CDD | 293 | 379 | 87 | 1.59208E-50 | ||
| Pfam | 307 | 375 | 69 | 3.1E-16 | ||
| SUPERFAMILY | 380 | 480 | 101 | 1.3E-33 | ||
| Pfam | 380 | 479 | 100 | 6.3E-34 | ||
| CDD | 382 | 476 | 95 | 3.51843E-55 | – | |
| Gene3D | 383 | 480 | 98 | 3.4E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
Expression pattern of LotjaGi1g1v0198100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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