Domain Predictions — View

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TIGR00485

Source: TIGRFAM

Description

EF-Tu: translation elongation factor Tu

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003746 View details of GO:0003746 AmiGO InterPro QuickGO	Molecular function	Translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.	Subterm of GO:0008135
GO:0005525 View details of GO:0005525 AmiGO InterPro QuickGO	Molecular function	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.	Subterm of GO:0032550 GO:0032561 GO:0035639
GO:0006414 View details of GO:0006414 AmiGO InterPro QuickGO	Biological process	Translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.	Subterm of GO:0034645 Part of GO:0006412

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v0296910.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi\|356513781\|ref\|XP_003525588.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004541 IPR005225 IPR009000 IPR009001 IPR027417 IPR031157 IPR033720 MF_00118_B PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF146 SSF50447 SSF50465 SSF52540 SignalP-TM_GRAM_POSITIVE TIGR00231 TIGR00485 cd01884 cd03697 cd03707	30
Lj1g3v4408630.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max] gi\|356572160\|ref\|XP_003554238.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004541 IPR005225 IPR009000 IPR009001 IPR027417 IPR031157 IPR033720 MF_00118_B PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF155 SSF50447 SSF50465 SSF52540 TIGR00231 TIGR00485 cd01884 cd03697 cd03707	29
Lj4g3v1425330.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi\|356513781\|ref\|XP_003525588.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004541 IPR009000 IPR009001 IPR027417 IPR031157 IPR033720 PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF146 SSF50447 SSF50465 SSF52540 TIGR00485 cd03697 cd03707	25
LotjaGi1g1v0198100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp\|P46280\|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr\|K7KMT9\|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi1g1v0198100	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004541 IPR005225 IPR009000 IPR009001 IPR027417 IPR031157 IPR033720 IPR041709 MF_00118_B PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR43721 PTHR43721:SF21 SSF50447 SSF50465 SSF52540 SignalP-TM TIGR00231 TIGR00485 cd01884 cd03697 cd03707	31
LotjaGi1g1v0730600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|Q9ZT91\|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr\|V7CYM1\|V7CYM1_PHAVU Elongation factor Tu; Found in the gene: LotjaGi1g1v0730600	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004541 IPR005225 IPR009000 IPR009001 IPR027417 IPR031157 IPR033720 IPR041709 MF_00118_B PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR43721 PTHR43721:SF23 SSF50447 SSF50465 SSF52540 TIGR00231 TIGR00485 cd01884 cd03697 cd03707	30
LotjaGi4g1v0228100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp\|P46280\|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr\|K7KMT9\|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi4g1v0228100	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004541 IPR005225 IPR009000 IPR009001 IPR027417 IPR031157 IPR033720 IPR041709 MF_00118_B PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR43721 PTHR43721:SF21 SSF50447 SSF50465 SSF52540 SignalP-TM TIGR00231 TIGR00485 cd01884 cd03697 cd03707 mobidb-lite	32
LotjaGi6g1v0300500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|Q9ZT91\|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr\|A0A151U0N5\|A0A151U0N5_CAJCA Elongation factor Tu; Found in the gene: LotjaGi6g1v0300500	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004541 IPR005225 IPR009000 IPR009001 IPR027417 IPR031157 IPR033720 IPR041709 MF_00118_B PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR43721 PTHR43721:SF23 SSF50447 SSF50465 SSF52540 TIGR00231 TIGR00485 cd01884 cd03697 cd03707	30

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd03707	CDD	1	14.29