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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0369600 |
| Transcript ID | LotjaGi1g1v0369600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84778256..84783484) extracted from Lotus japonicus Gifu genome v1.2.
ACTAAAGTTGCTAACGGAGCATAACGTGGGGGACGCTCCATGCAATAAAATTTTGTTGGGGACCGGAATCGTGGCTTTTG TAATCGTGGGGGACTAAAAGTGCAATTAAGCCTTATTTTATCAAATCGGATTAACAATATTGAATTCGTCCGATTCAAAT CCGCGTGCCTTGTTTACAGAAAGAGAGAGAGAGGGGGAGAAAGAAAATCAAATAGTTTTCTCAGATATTATTTCCCTCCA ATTATTTCAACACAACACGCTCTCACTCACATTCACACTCACACTTCTTCTTCTCCATTCCAAATCCAAGCATGGACGAA CGCTACAACCCCCGCACCGTCGAAGAGGTCTTCAGAGATTTCAAGGGCCGCCGAGCCGCCATCGTTAAGGCCCTCACCAC CGGTAATCTACTGTTTCTGTTGATCTTTTCATTCAATCTTCACCCACACCCTTCTTCATCTCTTTTCTTTTTGTTTTCTT GCAGATGTTGATGACTTCTTCCACCAGTGTGATCCAGGTATCTTCTTCTTCTTCTTCTGTCAATTCCTGTCTTTTCTTGT TTTTTTGTTTGTTTTCGGTATAATTAGAGAGAAATACCCAGATGCAAAACAGGTTCATTCACCCATTTTCATTTTGTGGG GTTTTCAATTTATTTTGAAATTTCACATTTTTTCAAGCAATTTAGAGCTGGTTAATTATCTAGTGTTTTTTTTTTTGTGT TTTAACAACAAAAAAAGTTGAATGAGATAGATTTAGTACATACTGATGTAAACATTGAGTGTGGTTGCATCTAAATAATG AGATTAAGCGATTAAACCTAAAATTCGTCACATTTCCTCGAAATTGATAATTTTCTGTGGCTGCTAGTGCTTTGCTTTAT CATTAAGTGTTTCTGAAATGGGAATGGCAATATGCTTCCTTGTATGGATGGAATCTTAATTGTGACTTTTTTCACCTGTT CGTGGATTTCGATTATTATTTGTGCCTGAAAGGACTTTACTCACCAGTTGAATTGGGATAAAATGGATCTATGAACCTAG CTTTGTTTTACTGTTTATTACTATTAATTTGTCATCCATATTTTCTTATGAATTCTATCTGTATTCTAAATGCTTTAAGA CCTAACATATACCCCCTGATATAAAGGTTTGGTTTGACTTCAGTAAACTTAGATAAGAGAGAATTTGGTAACTGTTAAAC TGGTATTTTATTGAACACTATTGTGTCTTTATGAATGGGTTAAGATTTTCACTTTATTGAAGTGTGCCTTTTGGTTAAAA AAATGCTCTTCTTAAATTTCAATCTGGTACGGTATCACTTAGGGTGATGGAATGCAGGTAATGCTTATGAATATGAAATC TACGCTAACTGTGCTAAATGTGAGATTGAAATGTATTCAATATCCATTTGGATGCCTTGTCACCTTGATGTTTATGTTAT GGTGTCTACTACTCTTTCATCCCTGCTGCAAAAGAGTAACAAAATCTGGATAAAGTTGTCCATTTAGTCTGATTGAAAAT AAGAGATGTCCATTCATGACCTGGGAAGTGCGATGATTTGTTGCAGTGTGATAAAGTTTGTCTGAAAAGCACTCACTGAT TAAAACTATAGCCGTTTGAAGAATATTGTTAGATAGAAAACTAGAGTTGGTCCTTCAAGTTAGTATCATGGCCTCCATAC CAAGTGGTTGGGAGTTCAATCCTTGCAATGCTCACTCTTCATTATTAAAATTAATATTCAGCATCACATAGATTGGGCTT GTGCGCTGTCCTGCTTCAAGCCCAAAAAGCTCTTCGATTTCATGTGTTGGAGATATAACCTATTGGGCCTCAACCTAAAT ATTTAAGCTTTGAAAGTGGTAGTGTTAGTTATGGACAAATATCATATTGGGACACTTTCACCCTTGACACAGTTTTTACC TATTGTCTAAGAAACAAACTTTCAGAGTTTTGTTAGTTTTTCATTTTCTCTAATGTGCTACCTAGTTATTTTTTCCCTTC TAAATAATGAAGTCAAGCTGTAGCTCCAAGCTGCTACTATGTCTGTGCCACAATCCAAATTCCTGATTATACTTTCAGTC TATATAGCATATGGAGTTAGCTTGTTCATGAAAATTATTTTAGAAACTCTTAGTTCTTTTTGGAGTGTGTGTCATAAAAT TGATTGATGTGGATGAGCTTTGTGATGCAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCTAGTGAGGTCTGGGAAGTC AATCTGCCTGCTGAGGAGGTGCCTCCAGAACTTCCAGAGCCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGA AAAGGATTGGCTATCCTTGGTCGCTGTGCACAGTGATGCATGGTTAATTTCTGTGGCTTTTTATTTCGGTGCTAGGTTTG GATTTGATAGGATGGATAGGTAACTACTTTTCTTTCCCCTATATAGACACGTAGTTTTACTCTGCTGACTCGCTTTTTTC TTTAAAATGTGTGTTTGATCTGAAGTAGCATACCTTTAGTTTAGGGTCAAATGTTCAGATTCCTGGACATTGTTTACGCA TTATTGTTTTAATTCTAAAATAAAGGATGGTTTGAGGCAGGGATGGATCTTGCTATGGTGTTTTATTGCTTTATTGGCTT GTTAAAAGTATAAATGGATGATTAGGTCATAAGAAATAAATGGTTAGACACAAAAGTGATTTTTCTAATAAATACATATG TAAAAAGAAAGAAGTGTACCTCATGAACACCCTAGTACCTCATGTGCTTTAATTGCTTCTTGTAGTGTTTTTTAACTGTT GCTACTAAATATAAGTATTCGTTGTTCTTCATTTGAGAAAATGTAGCTGACTATTGAAGTAGAATATGAATACGTGTCCT TTATACTGGTGTTTTAATAGTATAGAGAAGTATAGAGAAATAATTCGGGTGTCAATTAAGTTGAGTAAAAATAGTATCCT TGTTTTAACTTCAGGAACCGACGTACAGAGAACTGTCCAATTTCAGTTCCACTTTGTTAGGGTTAAAAACCAAACCTGTA ATTCAAATACTACAAACGTTCCATACAGCTGGTGAGAATTTAACATCAAACTTTAGGTGATAAATAATATTCTGTTTAGA AGGTATAAATTATCAGATAATATTAACAATCAAATCACCTAGAAAGGGTTTATCATTTGGTGCTTTTACTTTTTTTGCCA GAACTCAGAACTGTTGAAGTTTTCATTCTTTTTACTGATCACAGTCTATAGCACTTGCTATCACTGTGAAAAATTCAGTG AGAATGGGTACCTTCCAATTGTCTTGTTGTCTTCTCTGTCTGATTAAAATGGTTGATTCACTTTCTCCTTATAAGGACAT CAATAATGTACATAAACGTGTGTCAATATTGTTATGATTGGGATTTTTACTTAAGATCAGGAGGGGGTGAAAGATAGTAA ATCGAGGACTGTAAATCAGATCCTAAGATCCTACCTGGTAGACAAAAACATGTACGTCTGCAAAATAGTAAATTTTAATA TTGGAGAAAGGTGTATGAATGAGGATGACAACTAGTTATAAGTGCTTAGCTAATGATGCACCCCAACACTAATTTTTCTA GAAGCTTTTTTCGCTGTGTTCTGAAAGCTCAAATTGCTTATTGAATTTAAGCGCATAAGCTCATGTATAAGCATTTATTG AATAATTACATAATTAAGTTGTTTATCTAAATGAGAACTTAGTTTAGCTATACTTTCAGTTTTCCTCTTGGTAGGAAAAC ACATTATTACATTTTCGATTTTAATCTTCTATCGTTGATATGTTATTAATCTGTGCTTAATAATGGCTTGGATTGTGTGC TCCTTATTAATGGTCATAATATGACTTACTTGATAATTTTTTTTTCCACGCTATGGTTGCTAATTGTGCTTCAGTTAGCA TTTCGCGTGACACTAGATGGTTTACCCTCTCATCTTGTGACTTAATTTGATGCATTTTTTCAGTTTGCTATCTTTCATTA ATATCTGTTTGTCATTCTATATATGCAGGAAGCGACTGTTTGGTATGATCAATGATCTTCCAACAGTATTTGAGGTTGTT ACAGGAATGGCCAAGAAACAAGGAAAGGAAAAGACATCATTTTCTAATCATAGCAGTAACAAACCCAAATCAAACCCTAA GGTATGAAGTTTGAAAATCAAACTAACCATTAGCAGGGACAGTTTGCTGAGGGCGTAGCTTTTAGTCAACGTAGCTTTTT TTTTTACAAACTTTTAATTTGAATGAATGCAGACAATATTGTGTTTACTTAAGTGGTGTGTTACATTGTTTTCTAGATGC TAAAGTTTGAACAGGAAGTAAATGTAAAATTAGGGACCTAAAAGTCTTCTGTCTGGAATAAGATCTGGCACCCAATTAAT AATTTTTTCTTCATAATCCCTTTTGTTTTGGCAACTTCAGAAAGGTTCTGAATCTCAAGTGAAGTATTCAAAGGCAATGC CATCAAAGGACGAGGATGAGGATGGTTTGGAAGAGGAAGATGAAGATGAGCATGGAGAGACTCTGTGTGGGGCGTGTGGA GATAGCTATGCAGCTGATGAGTTCTGGATCTGCTGCGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTAC CCCTGCAAAGGCTCAGCATATCAAGCACTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGAACTTGACTGCTACTGG GATGGTGACTACTGTATATCCTGGCAATTGTACGACTGCTAATTCGCTTAGTTGGCCTGGCCTGTTAGTCTCTGTCATTT CTTGAACATCTGTTTCAGTTTTACATTAGTTATCTGAGTTACTGTTTATTTGGTCTTAAATTAGGATATTATGTTATAAG TGAACTTAATATCATGTGCTTCCTTAAACTTAGTGGTGTCTGTAACTTTGTCCTAGTGAACTTCATATTATCCCCCATTA TGTTACATTTTTCTCCCGAGTTTTCTCTTTCAAGTTCTAGTGTTTCTTTAGGACAGGACAACAGAAAGTGGAAGGGAATT CTTCTTCTTACTGGCCTCGAAATTCTTCTCAGATTTGACTTGAAAACTAGTCTCTACCAACAAAAGAATGGTGACAAGGA TGTTATCGTATACTACAATTTCTAGCTAGTTGGAGTTGGTTAAGTTCCAATCTCTATTTATTTAATCCTCGTAGTGTCCT TCATATTCTTAACTTGTCATGCCACTTGC
CDS sequence (LotjaGi1g1v0369600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAACGCTACAACCCCCGCACCGTCGAAGAGGTCTTCAGAGATTTCAAGGGCCGCCGAGCCGCCATCGTTAAGGC CCTCACCACCGATGTTGATGACTTCTTCCACCAGTGTGATCCAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCTAGTG AGGTCTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAACTTCCAGAGCCAGCATTAGGTATTAACTTTGCCAGA GACGGGATGGAAGAAAAGGATTGGCTATCCTTGGTCGCTGTGCACAGTGATGCATGGTTAATTTCTGTGGCTTTTTATTT CGGTGCTAGGTTTGGATTTGATAGGATGGATAGGAAGCGACTGTTTGGTATGATCAATGATCTTCCAACAGTATTTGAGG TTGTTACAGGAATGGCCAAGAAACAAGGAAAGGAAAAGACATCATTTTCTAATCATAGCAGTAACAAACCCAAATCAAAC CCTAAGAAAGGTTCTGAATCTCAAGTGAAGTATTCAAAGGCAATGCCATCAAAGGACGAGGATGAGGATGGTTTGGAAGA GGAAGATGAAGATGAGCATGGAGAGACTCTGTGTGGGGCGTGTGGAGATAGCTATGCAGCTGATGAGTTCTGGATCTGCT GCGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTACCCCTGCAAAGGCTCAGCATATCAAGCACTACAAA TGTCCATCTTGCAGCAACAAGAGAGCTAGAACTTGA
Protein sequence (LotjaGi1g1v0369600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDERYNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWEVNLPAEEVPPELPEPALGINFAR DGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKRLFGMINDLPTVFEVVTGMAKKQGKEKTSFSNHSSNKPKSN PKKGSESQVKYSKAMPSKDEDEDGLEEEDEDEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQHIKHYK CPSCSNKRART
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 87 | 87 | - | – | |
| PANTHER | 3 | 251 | 249 | 1.7E-149 | – | |
| PANTHER | 3 | 251 | 249 | 1.7E-149 | – | |
| Pfam | 9 | 136 | 128 | 7.3E-66 | ||
| Phobius | 88 | 109 | 22 | - | – | |
| Phobius | 110 | 251 | 142 | - | – | |
| MobiDBLite | 143 | 190 | 48 | - | – | |
| MobiDBLite | 148 | 172 | 25 | - | – | |
| SUPERFAMILY | 187 | 248 | 62 | 1.95E-17 | ||
| Gene3D | 190 | 251 | 62 | 7.3E-24 | ||
| ProSiteProfiles | 195 | 247 | 53 | 9.472 | ||
| SMART | 197 | 245 | 49 | 1.6E-8 | ||
| CDD | 197 | 247 | 51 | 7.29367E-30 | – | |
| ProSitePatterns | 198 | 244 | 47 | - | ||
| Pfam | 198 | 246 | 49 | 6.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi1g1v0369600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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