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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0369600 |
| Transcript ID | LotjaGi1g1v0369600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84778775..84783173) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACGAACGCTACAACCCCCGCACCGTCGAAGAGGTCTTCAGAGATTTCAAGGGCCGCCGAGCCGCCATCGTTAAGGC CCTCACCACCGGTAATCTACTGTTTCTGTTGATCTTTTCATTCAATCTTCACCCACACCCTTCTTCATCTCTTTTCTTTT TGTTTTCTTGCAGATGTTGATGACTTCTTCCACCAGTGTGATCCAGGTATCTTCTTCTTCTTCTTCTGTCAATTCCTGTC TTTTCTTGTTTTTTTGTTTGTTTTCGGTATAATTAGAGAGAAATACCCAGATGCAAAACAGGTTCATTCACCCATTTTCA TTTTGTGGGGTTTTCAATTTATTTTGAAATTTCACATTTTTTCAAGCAATTTAGAGCTGGTTAATTATCTAGTGTTTTTT TTTTTGTGTTTTAACAACAAAAAAAGTTGAATGAGATAGATTTAGTACATACTGATGTAAACATTGAGTGTGGTTGCATC TAAATAATGAGATTAAGCGATTAAACCTAAAATTCGTCACATTTCCTCGAAATTGATAATTTTCTGTGGCTGCTAGTGCT TTGCTTTATCATTAAGTGTTTCTGAAATGGGAATGGCAATATGCTTCCTTGTATGGATGGAATCTTAATTGTGACTTTTT TCACCTGTTCGTGGATTTCGATTATTATTTGTGCCTGAAAGGACTTTACTCACCAGTTGAATTGGGATAAAATGGATCTA TGAACCTAGCTTTGTTTTACTGTTTATTACTATTAATTTGTCATCCATATTTTCTTATGAATTCTATCTGTATTCTAAAT GCTTTAAGACCTAACATATACCCCCTGATATAAAGGTTTGGTTTGACTTCAGTAAACTTAGATAAGAGAGAATTTGGTAA CTGTTAAACTGGTATTTTATTGAACACTATTGTGTCTTTATGAATGGGTTAAGATTTTCACTTTATTGAAGTGTGCCTTT TGGTTAAAAAAATGCTCTTCTTAAATTTCAATCTGGTACGGTATCACTTAGGGTGATGGAATGCAGGTAATGCTTATGAA TATGAAATCTACGCTAACTGTGCTAAATGTGAGATTGAAATGTATTCAATATCCATTTGGATGCCTTGTCACCTTGATGT TTATGTTATGGTGTCTACTACTCTTTCATCCCTGCTGCAAAAGAGTAACAAAATCTGGATAAAGTTGTCCATTTAGTCTG ATTGAAAATAAGAGATGTCCATTCATGACCTGGGAAGTGCGATGATTTGTTGCAGTGTGATAAAGTTTGTCTGAAAAGCA CTCACTGATTAAAACTATAGCCGTTTGAAGAATATTGTTAGATAGAAAACTAGAGTTGGTCCTTCAAGTTAGTATCATGG CCTCCATACCAAGTGGTTGGGAGTTCAATCCTTGCAATGCTCACTCTTCATTATTAAAATTAATATTCAGCATCACATAG ATTGGGCTTGTGCGCTGTCCTGCTTCAAGCCCAAAAAGCTCTTCGATTTCATGTGTTGGAGATATAACCTATTGGGCCTC AACCTAAATATTTAAGCTTTGAAAGTGGTAGTGTTAGTTATGGACAAATATCATATTGGGACACTTTCACCCTTGACACA GTTTTTACCTATTGTCTAAGAAACAAACTTTCAGAGTTTTGTTAGTTTTTCATTTTCTCTAATGTGCTACCTAGTTATTT TTTCCCTTCTAAATAATGAAGTCAAGCTGTAGCTCCAAGCTGCTACTATGTCTGTGCCACAATCCAAATTCCTGATTATA CTTTCAGTCTATATAGCATATGGAGTTAGCTTGTTCATGAAAATTATTTTAGAAACTCTTAGTTCTTTTTGGAGTGTGTG TCATAAAATTGATTGATGTGGATGAGCTTTGTGATGCAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCTAGTGAGGTC TGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAACTTCCAGAGCCAGCATTAGGTATTAACTTTGCCAGAGACGG GATGGAAGAAAAGGATTGGCTATCCTTGGTCGCTGTGCACAGTGATGCATGGTTAATTTCTGTGGCTTTTTATTTCGGTG CTAGGTTTGGATTTGATAGGATGGATAGGTAACTACTTTTCTTTCCCCTATATAGACACGTAGTTTTACTCTGCTGACTC GCTTTTTTCTTTAAAATGTGTGTTTGATCTGAAGTAGCATACCTTTAGTTTAGGGTCAAATGTTCAGATTCCTGGACATT GTTTACGCATTATTGTTTTAATTCTAAAATAAAGGATGGTTTGAGGCAGGGATGGATCTTGCTATGGTGTTTTATTGCTT TATTGGCTTGTTAAAAGTATAAATGGATGATTAGGTCATAAGAAATAAATGGTTAGACACAAAAGTGATTTTTCTAATAA ATACATATGTAAAAAGAAAGAAGTGTACCTCATGAACACCCTAGTACCTCATGTGCTTTAATTGCTTCTTGTAGTGTTTT TTAACTGTTGCTACTAAATATAAGTATTCGTTGTTCTTCATTTGAGAAAATGTAGCTGACTATTGAAGTAGAATATGAAT ACGTGTCCTTTATACTGGTGTTTTAATAGTATAGAGAAGTATAGAGAAATAATTCGGGTGTCAATTAAGTTGAGTAAAAA TAGTATCCTTGTTTTAACTTCAGGAACCGACGTACAGAGAACTGTCCAATTTCAGTTCCACTTTGTTAGGGTTAAAAACC AAACCTGTAATTCAAATACTACAAACGTTCCATACAGCTGGTGAGAATTTAACATCAAACTTTAGGTGATAAATAATATT CTGTTTAGAAGGTATAAATTATCAGATAATATTAACAATCAAATCACCTAGAAAGGGTTTATCATTTGGTGCTTTTACTT TTTTTGCCAGAACTCAGAACTGTTGAAGTTTTCATTCTTTTTACTGATCACAGTCTATAGCACTTGCTATCACTGTGAAA AATTCAGTGAGAATGGGTACCTTCCAATTGTCTTGTTGTCTTCTCTGTCTGATTAAAATGGTTGATTCACTTTCTCCTTA TAAGGACATCAATAATGTACATAAACGTGTGTCAATATTGTTATGATTGGGATTTTTACTTAAGATCAGGAGGGGGTGAA AGATAGTAAATCGAGGACTGTAAATCAGATCCTAAGATCCTACCTGGTAGACAAAAACATGTACGTCTGCAAAATAGTAA ATTTTAATATTGGAGAAAGGTGTATGAATGAGGATGACAACTAGTTATAAGTGCTTAGCTAATGATGCACCCCAACACTA ATTTTTCTAGAAGCTTTTTTCGCTGTGTTCTGAAAGCTCAAATTGCTTATTGAATTTAAGCGCATAAGCTCATGTATAAG CATTTATTGAATAATTACATAATTAAGTTGTTTATCTAAATGAGAACTTAGTTTAGCTATACTTTCAGTTTTCCTCTTGG TAGGAAAACACATTATTACATTTTCGATTTTAATCTTCTATCGTTGATATGTTATTAATCTGTGCTTAATAATGGCTTGG ATTGTGTGCTCCTTATTAATGGTCATAATATGACTTACTTGATAATTTTTTTTTCCACGCTATGGTTGCTAATTGTGCTT CAGTTAGCATTTCGCGTGACACTAGATGGTTTACCCTCTCATCTTGTGACTTAATTTGATGCATTTTTTCAGTTTGCTAT CTTTCATTAATATCTGTTTGTCATTCTATATATGCAGGAAGCGACTGTTTGGTATGATCAATGATCTTCCAACAGTATTT GAGGTTGTTACAGGAATGGCCAAGAAACAAGGAAAGGAAAAGACATCATTTTCTAATCATAGCAGTAACAAACCCAAATC AAACCCTAAGGTATGAAGTTTGAAAATCAAACTAACCATTAGCAGGGACAGTTTGCTGAGGGCGTAGCTTTTAGTCAACG TAGCTTTTTTTTTTACAAACTTTTAATTTGAATGAATGCAGACAATATTGTGTTTACTTAAGTGGTGTGTTACATTGTTT TCTAGATGCTAAAGTTTGAACAGGAAGTAAATGTAAAATTAGGGACCTAAAAGTCTTCTGTCTGGAATAAGATCTGGCAC CCAATTAATAATTTTTTCTTCATAATCCCTTTTGTTTTGGCAACTTCAGAAAGGTTCTGAATCTCAAGTGAAGTATTCAA AGGCAATGCCATCAAAGGACGAGGATGAGGATGGTTTGGAAGAGGAAGATGAAGATGAGCATGGAGAGACTCTGTGTGGG GCGTGTGGAGATAGCTATGCAGCTGATGAGTTCTGGATCTGCTGCGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGT GAAGATTACCCCTGCAAAGGCTCAGCATATCAAGCACTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGAACTTGA
CDS sequence (LotjaGi1g1v0369600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAACGCTACAACCCCCGCACCGTCGAAGAGGTCTTCAGAGATTTCAAGGGCCGCCGAGCCGCCATCGTTAAGGC CCTCACCACCGAGAAGGAAAACCTTTGCCTTTATGGATTTCCTAGTGAGGTCTGGGAAGTCAATCTGCCTGCTGAGGAGG TGCCTCCAGAACTTCCAGAGCCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGATTGGCTATCCTTG GTCGCTGTGCACAGTGATGCATGGTTAATTTCTGTGGCTTTTTATTTCGGTGCTAGGTTTGGATTTGATAGGATGGATAG GAAGCGACTGTTTGGTATGATCAATGATCTTCCAACAGTATTTGAGGTTGTTACAGGAATGGCCAAGAAACAAGGAAAGG AAAAGACATCATTTTCTAATCATAGCAGTAACAAACCCAAATCAAACCCTAAGAAAGGTTCTGAATCTCAAGTGAAGTAT TCAAAGGCAATGCCATCAAAGGACGAGGATGAGGATGGTTTGGAAGAGGAAGATGAAGATGAGCATGGAGAGACTCTGTG TGGGGCGTGTGGAGATAGCTATGCAGCTGATGAGTTCTGGATCTGCTGCGACATCTGTGAGAAGTGGTTCCATGGAAAAT GTGTGAAGATTACCCCTGCAAAGGCTCAGCATATCAAGCACTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGAACT TGA
Protein sequence (LotjaGi1g1v0369600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDERYNPRTVEEVFRDFKGRRAAIVKALTTEKENLCLYGFPSEVWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSL VAVHSDAWLISVAFYFGARFGFDRMDRKRLFGMINDLPTVFEVVTGMAKKQGKEKTSFSNHSSNKPKSNPKKGSESQVKY SKAMPSKDEDEDGLEEEDEDEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQHIKHYKCPSCSNKRART
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 76 | 76 | - | – | |
| PANTHER | 3 | 240 | 238 | 2.0E-136 | – | |
| PANTHER | 3 | 240 | 238 | 2.0E-136 | – | |
| Pfam | 9 | 125 | 117 | 1.3E-53 | ||
| Phobius | 77 | 98 | 22 | - | – | |
| Phobius | 99 | 240 | 142 | - | – | |
| MobiDBLite | 132 | 179 | 48 | - | – | |
| MobiDBLite | 137 | 161 | 25 | - | – | |
| SUPERFAMILY | 176 | 237 | 62 | 1.79E-17 | ||
| Gene3D | 179 | 240 | 62 | 6.7E-24 | ||
| ProSiteProfiles | 184 | 236 | 53 | 9.472 | ||
| SMART | 186 | 234 | 49 | 1.6E-8 | ||
| CDD | 186 | 236 | 51 | 3.62031E-30 | – | |
| ProSitePatterns | 187 | 233 | 47 | - | ||
| Pfam | 187 | 235 | 49 | 6.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi1g1v0369600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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