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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0441700 |
| Transcript ID | LotjaGi1g1v0441700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|C6T7X8|C6T7X8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0441700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93846996..93853034) extracted from Lotus japonicus Gifu genome v1.2.
AAATCACTTTTTTTCATAATCTCAAACAAACGCACAAAAAGAGGTTTAGACAAATAGCGTTATTCACTTTTTTCACACAA AATACACGCACAAAACAAAACACACACTCATCCATCGACGTTATTTTCTTCCTTTTCACCTTTGATCCATTCTCATGGTG TCACCCCCTATCCCCTAAGCATTTCCAACCCTTCCACAGTCTTCAATTGCATCTAGTTTCTCCAAATCCCAATCCCTCTC GCTTAGATCTCAATTGGGTTATGGAAATGGCTTCCAGTCCCCGCACCGTCGAAGAGATCTTCAAGGATTTCAGTGCTAGA AAAACCGCTATTGTTCGCGCTCTCACTCAAGGTACACTCATCTTTCCAAATTCCCATCTGGGTCTCCTTTTTTTCTTGTT TTACATCTCAAAGTTCTCAACTTTTTTATCTTTCTCTCTTTCAGATGTTGATGATTTTTACGGGCTCTGTGATCCAGGTA AAGGGTGATATCGGATTTTTGTTTTTTGTTTTTTTGTTTTCGTGTTTTTTGTTTTGTTTACGTGAATAGGTTGGAATTTT TTGTTGTGTGTTTTGTTTTGAAATTTGAATTCTGGGTTATGTGTGTGCATGCTTGTTGCAGTTAACAAAGTTGACTTTTT GCATGGTTTTTATGCTGTTTAGTTCTTTAAGCAACGTTTAATTTGACGACAATTGGGTTTGCTCCCTGGCATTCAATTAA ACAGGATCACATTCTGGATTTCAAATTCAATTTAATTGAGATTATTAGTTTAGGTGGTCTTCTAATCATTTGAGGGGAAC AAAATGAGTGTGCATTATTGAGGAATAGTCAGTTTTTGCATTGTTCTTGTGCTGTATAGTTCTTTTAGCGCGGTTAAATT TGACAAGAATTGGACCTGCTCTATGGCATTTCATTACTCAGGGTCACATGCTGGATTTCAAATTCAATAAAATTCAGATG ATTAGTTTAGGCGGTCATGTAATTATTGATTTATCCATCCTTCTATGAAATTCTAAGTTTTAGGTGTATTTGTTTAGAAA AGGATAACTTGTGTCTTTATGGACATCCAAATGAAAGCTGGGAAGTAACGCTGCCAGCGGAGGAAGTTCCGCCAGAGCTC CCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAATCGCAGGGATTGGCTTTCTCTGGTTGCTGTGCACAG TGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGTACAATCTAGCTTTGGTGT AAATGCATATATGCACATTGTTTAATGTTAAAAACTATGGTTTACAATTGGAGTTGGTTCTCAACATTCATCTAAATCAT TATGACTGATGAAAGTTTCAAAAGAAATTACAGATTTTTATCTTGGTGGTTCAAATTTCTGTGGTCTGTCAACCTTTTGA TATGAGATACTCTTTAGGGTTTATACATGTCATGCATCCCTTATGTTGCAGTAAAAGGTGTCTCACTACTTGTACACTCT TATGTTACCAGAAACATCAGCGAAGGTCCACATCCAGCAAATTAACAATTTTTTAGAAAGTGTAAATTTGATATTGGCTC TTATTGTTTCCATGAAATGTGATGACTTAGGAAATTTTAATTTAGCTATGCAGCAGCATGTAACATGAAAGTTGTGACTT TGATGTTAGGTTTGTTTAAGTATATTAACTGTGGCTATTTTTCAAACAATAAGTAAACAAATGTTTAAAAGTGTTGAAGT ATAGTTTAAAGGCATTCATGTGTCTTCACTCAATAACTTAAGCTTCTGGGTTTTTGCAAATGAATAATTAAAAGAGTCTA TGTTAGAAAATATAGGAGAAATGGGTTGGATAGAAAGGAGTCCATCTGAGAGGTTAGGACGCAGTTACTATGTTACTGGA GTCAGTTATTAGGAGAATAGTAGTGGAGCCAGTTATTAGCAGTGGGGCAGATTCTGTGTATACTGGGAGTTGTTCAGTGA CTAGTGAGTCAAAACTGTAAGCCTCTCAAATTGCTCTCTCAATTGTACAAGATTGATTAACCTTTTTCCATAGTGGGTCA AGGCAGAATTAGAGTTTCTATGATAACATTTCTATCTACTGCACTTCTTATACCAGTGTAACATTGGGATAGTTGGTTCA TGACATGATATCAGAACAATGTACTTAGCTCTGAATGGGCTCTTGCATGAGAAGCTATGTTAAAACTAATTAAAATCATT CACCTACCTTGCTTGAATTTTTGGGATAGGTAGTTCTTGACATAAAGTATTAGTTGACAATAATTATATGGGAATTTGAT TTAGGATGTTTATGAAGGAGAATATTTCTAATCTCTTCTGAAATCCCTCATCTCATTCCATGCTTTTATTTTTATTCCCT TTCTCAGGATTAATTGTAGCGCTAAGGGACATATGCAATTGAGTTTCATTTATCATAATTCATTTGTATAGTTCAATATG CTTACGCATTGGCTCTGGTTTCTTCTACTATTTCATTGAGCAGTCCGTAGCATGTAATAGTGGCTTTATTGTGATGGAAA TTCACAACATGTTTGTGTATAGTATGGATCATGGAAATTACGTTTAATTTCTGCCTGATTCTTCCCTCTCCTCCTTTCAC TTCAAGAACTTATTTTAGGGTTAGAAATCTTAACAAAACCCACCAACATTCAGCCCATCTTCAGTTCTTATTCAATACTC TTCAGGCCGACCAAATGTTTTCACGCCTGTTGTACTAGACACCTGTTTGCACTTTGTATCACTTCTTCTATCCTCTGCCT TGTTCCCAGCACCTCCATCTTCTTCTCTGTTTGCAGCACTTCACAGGTCTCCCTGATCACACACACGAGCAGACATATAT TAGTGTTGTGTGTTTAAATTATGACTTTTGATTATTAATGATGAGAATGACTTCAATTTTGAGTTCTTTTTATTTTTAAG TATTTGAGTGTTTAGTAAAAATATTCATATAGTATCTATTGGTATAGTGGGTGGTCTGTAATCTGTGTTATCTTGGATAA GTAGTAACTGCTCCATGTACTGCTATACTGCTATAGTACCAGTGTTGTCAGGATAGTGTGGTCCTGTGGTCTTTCTTAGG GTTTGCAATCTTGATTGTGGCTGGGATCACATAGGGAGGTGGATTGCGATCCTTGGGGCTAGGACCGTAGGATTCCGATC CAATCCTCAGAATTGAGTTTGCCACCTGCGTTCCAAGTTTCGGCCCGAAAGATGACCCACCTGCGATATAAATATCACGT TTCTGATCTCTGCAGCTTCCAAACCTTAAGTCCATTTGGACTCTGAGGCTGCCTTCTATGATCTCCGTCGTCAACATGCG TGCACCGGCGAACGAACTCCACTGTCGACCACGGCGCGCTGGTCTTAGCCCTGTTTTTCTTGTCCCACGAGTTCCGGATT TCTTGTTCTCAGTTCTCTGACTTTTCTCATCTCTATTAAGTGCGAGTTCTGTCATCATCCACCAAAGACAACAACAATAT GCTTCATACATGTGTACAAGCTTCCATTGCAGCTTTTCTCCACGCGTCCACCACCCTATTGTCCCATGTTGTCTTGCATG CTTCCCTTTTTTATTAATATATATCTTGTGTATCTCTGACTAATGTATATGGAAGTACGAAAGCAAGTAAAATTCCTTTA ATATACTTTTTTCCAATATATTTTTGATTAAATTTATATGAATTTCACTTATTTAATTTTAGAGTGAGAAAAAAAAGTGC TAGGAAAAGTGTGTCTAAAACTGTATTATTAGTTGCATGGTTAGTCAGTAGTCACTTGAATTATGTTCTTTTGGATTCAA CTAGTATTAGTCTTGTGTATGGTTATGAATTTTCAGTTTGAGTTTATTCTAATGATGTGAATCCTAAGGTTATTTTTCCT TATCTATGTGATTTTCCTTGCATGTGTATTTTATTAAGTATAATTTTACATTTCTAGAAGGATCTTATGATCCGATCTAC GATCCTACAATCTATGATCTTTCTACCCCCTCTCGATCCTGACAACAATGTATTGCACTTTTTCGGTTGGCTGCTCTGCT CTTCTCTACTACCCTGTGTTGATTTCTATGAATTTTCCTTTATGGCTTTCCCTTCAACTAGAAACTACAAGGATTTCCAT TTGGAAGAGATATGATATAGAAAACTTCGATTGAATTTTTCTGTGGTAGCACTTTTGCTCAATACGTACTGTAACATCGC ATATAGTTCCTTCTGTTGATGGTTTCCATGATTCTTTATGGCAGGAAACGTTTGTTCAGTCTGATCAATGACTTTCCCAC CGTGTTTGAAGTTGTGACTGACAGGAAACCAGCTAAAGACAAGCCAGCCACGGATAGTGGAAGCAAATCCAGAGGAAGCA CCAAGGTTAGTGTTTTCCTTTTCTAGTGGTAACTGTTTCTCTGTTTCTTTTGACTGGTTCAGTATAGGTTACTTCAATGT CTTGGTTTGGGAATTGCTTGTGCATTGTGAAAGCTTCATATAAGATACAATTTGATAATGAAAGTCAGTATATCAATGTC ATTATATTCCTAACTCATCAGATAAAATTTGATACTGAAAAACCTACCTACGCTGCTTCTAAAATCTAAAATCTAAAAGT ATCTCCTAACATGTTTATTGTGATAGCTAAGGGTGAGAAGAGTGAATGATGACCCAAATACAAATATTACAGGATGTTAA GGTCCCACATTGACACATTAGACTCAGCCCGAATTATAAGTCAGGAAACACAAACCTAGGATATCTGAAGACATTTTACA TCTGTTTTATTTTTAGCATGAGGAAAACTTCTCAAAGCAACTTTTGAGAAGCACAGACAAATACTAGACTAGGCCTTGGA ATTGCTTATTCCTGTCTCATAAATTTGATGCCATTGCTGACCTAAGTTCAGAATCTTTCGCTATCACATTTGCATCTCTG TTAAGCCTATGGAGAAAATCCAAAAAGTTAAAAATATTATCCATGGACTACATTTTAGAAAGCTGTCAGTACCATGATCT CTGCTTTTCTATGTTATCAGACAACTAGTCAAGGAGTTGTATATTCCCTCTTTGATGTGAGCTTGCACGATTATTTGCAG AGATCTAGTGATGGGCAAGTTAAGAGCAACCCTAAGTTTGCAGAGGAGGGTTATGAGGAGGAGGATGATGAGCACAGTGA AACCCTTTGCGGGAGCTGCGGTGGAAACTACAATGCCGACGAGTTTTGGATTGGGTGCGACATATGCGAGAGGTGGTACC ATGGGAAGTGTGTGAAGATTACACCTGCAAAGGCTGAGAGCATAAAGCAATATAAGTGCCCATCATGCAGCATGAGGAGG GGCAGGCCCTAGGGCTGAAAGGTATATGGCTGACAACAAGATACTTTGATATTGTTACATCACTCAGAGAAGTTCATGTT AATGGGTATAACGGTGTATCCAATGCGCATCTCTAGTGGCGTATTTCGCTGGGATTAAGTTTATTTTACCATGATAAATT CTTAGTGTGTGATATTTACTTACAGAATAGAACATGACATTTTCATTTGTCAACTAGTTGATATTTGCTTGAATGTACAC ATTGTTCTCTTGTTCACTTAACCTTGTTTCAAAAAATAAAGGGTATTGCTCCTTTTCCCTCCAGTTTTGTCTAGTCACGC TTTGTAATGTTGCTTGTGTGTTTGATCTCTGTTTCATTCACTTAAAAGCACTTTCATTTCAATTTATTGTGAAACATAAA TTTTCATTGAAAGTGCTTTTAAGCATTGCTAGCGGAAAAACAGAGGCTAATGGAAAGATATCTTCATGTTCTTAGACTTT TATTCTCATGTGACACAAATTTTCATATCAGACTAAGATTATATAGTTAAGACATTATTTTTCAGGCCATCGAAGAGTTT TATTTTCATGATTTCCCTGGGCAAGAATGAGTTCTAATATAATTAAGACATTACATGCTTGAGGGTTAAAAAATTATCTC TTGATTTATAGATTGATTCGTCATATTTTGACATTTCCG
CDS sequence (LotjaGi1g1v0441700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGGCTTCCAGTCCCCGCACCGTCGAAGAGATCTTCAAGGATTTCAGTGCTAGAAAAACCGCTATTGTTCGCGC TCTCACTCAAGATGTTGATGATTTTTACGGGCTCTGTGATCCAGAAAAGGATAACTTGTGTCTTTATGGACATCCAAATG AAAGCTGGGAAGTAACGCTGCCAGCGGAGGAAGTTCCGCCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGA GATGGCATGAATCGCAGGGATTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCT TGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTCAGTCTGATCAATGACTTTCCCACCGTGTTTGAAGTTGTGA CTGACAGGAAACCAGCTAAAGACAAGCCAGCCACGGATAGTGGAAGCAAATCCAGAGGAAGCACCAAGAGATCTAGTGAT GGGCAAGTTAAGAGCAACCCTAAGTTTGCAGAGGAGGGTTATGAGGAGGAGGATGATGAGCACAGTGAAACCCTTTGCGG GAGCTGCGGTGGAAACTACAATGCCGACGAGTTTTGGATTGGGTGCGACATATGCGAGAGGTGGTACCATGGGAAGTGTG TGAAGATTACACCTGCAAAGGCTGAGAGCATAAAGCAATATAAGTGCCCATCATGCAGCATGAGGAGGGGCAGGCCCTAG
Protein sequence (LotjaGi1g1v0441700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMASSPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWEVTLPAEEVPPELPEPALGINFAR DGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDFPTVFEVVTDRKPAKDKPATDSGSKSRGSTKRSSD GQVKSNPKFAEEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMRRGRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 87 | 87 | - | – | |
| PANTHER | 3 | 238 | 236 | 4.5E-146 | – | |
| PANTHER | 3 | 238 | 236 | 4.5E-146 | – | |
| Pfam | 9 | 134 | 126 | 9.2E-66 | ||
| Phobius | 88 | 109 | 22 | - | – | |
| Phobius | 110 | 239 | 130 | - | – | |
| MobiDBLite | 137 | 177 | 41 | - | – | |
| MobiDBLite | 148 | 165 | 18 | - | – | |
| SUPERFAMILY | 174 | 237 | 64 | 3.54E-19 | ||
| Gene3D | 178 | 239 | 62 | 4.1E-24 | ||
| ProSiteProfiles | 183 | 235 | 53 | 9.348 | ||
| CDD | 185 | 235 | 51 | 3.79573E-31 | – | |
| SMART | 185 | 233 | 49 | 4.2E-10 | ||
| ProSitePatterns | 186 | 232 | 47 | - | ||
| Pfam | 186 | 233 | 48 | 7.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi1g1v0441700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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