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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0334800 |
| Transcript ID | LotjaGi2g1v0334800.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter ATP-binding protein; TAIR: AT4G25960.1 P-glycoprotein 2; Swiss-Prot: sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2; TrEMBL-Plants: tr|A0A1J7FYB6|A0A1J7FYB6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0334800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81079479..81082452) extracted from Lotus japonicus Gifu genome v1.2.
ATTTACTTGTAATTTCAGCATAACCTACTCAAGACAATTATCCCGCACAACAGCAACAGCAAGCTTAGGTGGTAGTTTTC GATCAGACAAAGAATCTATTGGCAAGGTTGAAGCAGAAAAGGGAAGCAATTCAAAGCATGTTTCAGTAGCAAGACTATAT TCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGAACGTTATGTGCATTTGTTGCTGGAGCACAGATGCCGCTTTT TGCCCTTGGAATCTCTCACGCACTTGTATCATACTATATGGACTGGGATACAACACGTCATGAAGTCAAAAAAATTTGTT TTCTCTTCGTTGCAGCAGCAGTGATAACTATCACCGTTCATGCCATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGA CTCACTCTTCGTGTGAGAGAAATGATGTTTGCGGGTAATTTTGATAAACTTATTACTTTCTCTATCACTCATCTTATTGT CTTTGTATGAAACGGTTCCTTTCATGATTCTTGCACCTATCAATTTCACACAACATTATATCAGAAAAATAAAATCTGAT GTGATTTGTAAATATGGATGTGTGTGCTGTTTTACACATTTTTAAGGTTTGAGTAATGTTTAATCAATACTATTGATCAA TCCATTTTCTGATGAATTCTGTTATAAAGGTGCATTGCATTTTCAATACATTGTCATTTTTACTTCCAATGTATGTAATG CTTAAAAACAACATAATTATCACAGGCTTAAATTTGATGATAATGCCTGTTTCACTTAAATTGCCTTATTTATCTGGCTG CAGCTATTCTGAAGAATGAGATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCACGTTTAGAGAGT GATGCAACTTTATTACGGACTATAGTTGTTGATCGCTCTACAATTCTGTTACAAAATGTTGGTCTGGTTGTTGCTTCATT TATTATTGCCTTCATCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACTTATCCTTTGGTCATCAGTGGTCACATCA GTGAGGTGAGGTTCCTTCTTCTATATTTCAAAATTATAAATTAGCATACTTGTTTGTGTCTTAATAGTTAATACCCTCCA TCATTTCAGAAAATTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGGGA GGCTGTGAGCAACATGCGCACTGTTGCTGCATTTTGCTCTGAAGAAAAGATCCTTGACCTTTATGCTAATGAGCTTGAAG GTCCTTCCAGACGTTCATTTCAGCGGGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCT TATGGCCTTGCCTTGTGGTATATATGCTTTAACTTCATTCTTTAATTTGTTATAAGATAAATGTCACACCAAATGGTGGT TGAGATGTTTATACCTTGTGCAGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCAGTAATGAAGTC ATTTATGGTTTTGATTGTAACTGCACTGGCTATGGGGGAGACTTTGGCACTGGCCCCAGACCTTTTGAAAGGGAATCAAA TGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATAACAGGTGACACTGGAGAAGAGTTGAAGACTGTTGAG GGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTGATAATTTTCAAGGATTTTAGTTTAAG AGTTCCTGCAGGGAAGAGTATAGCCATAGTGGGGCAAAGTGGTTCCGGTAAAAGCTCTATAATCTCCCTTATACTCAGAT TTTACGATCCAACATCAGGGAAGGTGTTAATTGATGGTAAGTTGTTTTCACTATCAATATTTTATCTATTCAGTCCATTA CTAGTGCAAAAGGGAGTTTTAGAAGTTTTTAAGAAGTAAAATGAGTTAAGCTCAACACATATTTGCATGCACAAGTCAAT GACACTAGAGAAGGTTTATTGACTACATGCACGGGTGCCATAAAGGCTCTGTTTATTTGAGCTTATCTTATGGTATAAGC GCTAATGCAAATATTTGGGAGAACTTATGTAAATAGCTTATAAATATTTGGGAGAGCTTATGTAAATAGCTTATAACCTG CCTATAAGCTGTTTTGAGCCAATTTTCTTAAGCTACTTAGCTTGTGGACAAGCGTTTATACATACCTATAACCTATTTTG AGCTTATTTCAATAAGTTTCTCAAATTAGCTTATGAATAGGCGATTATGTAATAAATGCTTATTGCTATAAGCAAGCGTT TAAGTAAGTTGTTTACCCAAACACACTCAAAAGTAATTATGTGCTACACTAGTACCATAAGATGCAAATTTTTCTAACAA TGATGGATCAAATTGTTACAGGAAAAGACATAACGAGACTTAATTTGAAATCTCTGAGGAAACATATTGGTCTTGTACAA CAAGAACCTGCTCTGTTTGCAACATCAATATATGAAAATATTCTTTATGGGAAGGAAGGCGCTTCTGATTCAGAAGTAAT TGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATCAGTGCTCTTCCAGATGGTTACTCTACTAAAGTAGGGGAACGAG GGGTGCAACTATCTGGTGGCCAGAAACAAAGGGTAGCCATTGCCAGAGCTGTTTTGAAGAACCCTGAGATCTTGCTTCTC GATGAAGCCACTAGCGCGCTAGATGTGGAGTCGGAGCGCGTGGTGCAGCAAGCTCTCGACAGGTTGATGCAGAACAGAAC AACAGTTATGGTGGCGCATAGGCTATCCACAATAAGGAATGCAGACCAAATCTCAGTTTTGCAGGATGGGAAGATAATTG AACAAGGGAGTCATTCAAGTCTTGTAGAGAATAAAAGTGGAGCATACTTTAAACTAGTTAGCCTTCAACAACAACAGCCT CAACCATAGATTGA
CDS sequence (LotjaGi2g1v0334800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGAACGTTATGTGCATTTGTTGCTGGAGCACAGATGCCGCTTTTTGC CCTTGGAATCTCTCACGCACTTGTATCATACTATATGGACTGGGATACAACACGTCATGAAGTCAAAAAAATTTGTTTTC TCTTCGTTGCAGCAGCAGTGATAACTATCACCGTTCATGCCATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTC ACTCTTCGTGTGAGAGAAATGATGTTTGCGGCTATTCTGAAGAATGAGATTGGCTGGTTTGATGATACAAACAACACAAG TTCTATGCTTTCATCACGTTTAGAGAGTGATGCAACTTTATTACGGACTATAGTTGTTGATCGCTCTACAATTCTGTTAC AAAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACT TATCCTTTGGTCATCAGTGGTCACATCAGTGAGAAAATTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCT AAAAGCCAACATGCTTGCTGGGGAGGCTGTGAGCAACATGCGCACTGTTGCTGCATTTTGCTCTGAAGAAAAGATCCTTG ACCTTTATGCTAATGAGCTTGAAGGTCCTTCCAGACGTTCATTTCAGCGGGGCCAAATTGCTGGCATATTCTATGGCATT TCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTT TAAATCAGTAATGAAGTCATTTATGGTTTTGATTGTAACTGCACTGGCTATGGGGGAGACTTTGGCACTGGCCCCAGACC TTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATAACAGGTGACACTGGAGAA GAGTTGAAGACTGTTGAGGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTGATAATTTT CAAGGATTTTAGTTTAAGAGTTCCTGCAGGGAAGAGTATAGCCATAGTGGGGCAAAGTGGTTCCGGTAAAAGCTCTATAA TCTCCCTTATACTCAGATTTTACGATCCAACATCAGGGAAGGTGTTAATTGATGGAAAAGACATAACGAGACTTAATTTG AAATCTCTGAGGAAACATATTGGTCTTGTACAACAAGAACCTGCTCTGTTTGCAACATCAATATATGAAAATATTCTTTA TGGGAAGGAAGGCGCTTCTGATTCAGAAGTAATTGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATCAGTGCTCTTC CAGATGGTTACTCTACTAAAGTAGGGGAACGAGGGGTGCAACTATCTGGTGGCCAGAAACAAAGGGTAGCCATTGCCAGA GCTGTTTTGAAGAACCCTGAGATCTTGCTTCTCGATGAAGCCACTAGCGCGCTAGATGTGGAGTCGGAGCGCGTGGTGCA GCAAGCTCTCGACAGGTTGATGCAGAACAGAACAACAGTTATGGTGGCGCATAGGCTATCCACAATAAGGAATGCAGACC AAATCTCAGTTTTGCAGGATGGGAAGATAATTGAACAAGGGAGTCATTCAAGTCTTGTAGAGAATAAAAGTGGAGCATAC TTTAAACTAGTTAGCCTTCAACAACAACAGCCTCAACCATAG
Protein sequence (LotjaGi2g1v0334800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGPDWFYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTRHEVKKICFLFVAAAVITITVHAIEHLSFGIMGERL TLRVREMMFAAILKNEIGWFDDTNNTSSMLSSRLESDATLLRTIVVDRSTILLQNVGLVVASFIIAFILNWRITLVVIAT YPLVISGHISEKIFMKGYGGNLSKAYLKANMLAGEAVSNMRTVAAFCSEEKILDLYANELEGPSRRSFQRGQIAGIFYGI SQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDTGE ELKTVEGTIELKRINFSYPSRPDVIIFKDFSLRVPAGKSIAIVGQSGSGKSSIISLILRFYDPTSGKVLIDGKDITRLNL KSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISALPDGYSTKVGERGVQLSGGQKQRVAIAR AVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGSHSSLVENKSGAY FKLVSLQQQQPQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 570 | 570 | 0.0 | ||
| CDD | 1 | 314 | 314 | 1.9019E-109 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 570 | 570 | 0.0 | – | |
| SUPERFAMILY | 2 | 310 | 309 | 4.05E-45 | ||
| Gene3D | 4 | 296 | 293 | 8.2E-66 | ||
| Phobius | 6 | 39 | 34 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| ProSiteProfiles | 10 | 296 | 287 | 37.558 | ||
| Pfam | 11 | 282 | 272 | 2.7E-48 | ||
| Phobius | 40 | 50 | 11 | - | – | |
| Phobius | 51 | 68 | 18 | - | – | |
| TMHMM | 53 | 75 | 23 | - | – | |
| Phobius | 69 | 137 | 69 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 138 | 165 | 28 | - | – | |
| Phobius | 166 | 232 | 67 | - | – | |
| TMHMM | 233 | 255 | 23 | - | – | |
| Phobius | 233 | 254 | 22 | - | – | |
| Phobius | 255 | 273 | 19 | - | – | |
| TMHMM | 270 | 292 | 23 | - | – | |
| Phobius | 274 | 291 | 18 | - | – | |
| Phobius | 292 | 573 | 282 | - | – | |
| Gene3D | 297 | 326 | 30 | 7.6E-135 | ||
| SUPERFAMILY | 322 | 567 | 246 | 3.94E-92 | ||
| Gene3D | 327 | 569 | 243 | 7.6E-135 | – | |
| ProSiteProfiles | 329 | 565 | 237 | 25.13 | ||
| CDD | 329 | 567 | 239 | 6.11043E-138 | – | |
| Pfam | 348 | 496 | 149 | 9.1E-37 | ||
| SMART | 356 | 542 | 187 | 3.7E-16 | ||
| ProSitePatterns | 468 | 482 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0334800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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