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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0208200 |
| Transcript ID | LotjaGi3g1v0208200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|I3SZL0|I3SZL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0208200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30775476..30781650) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTAGCCAAACAGGCTCACTTTACATTAGGCAGACTAAAACAAAGATAGACAGACACACACACTCTGCGCAGTCTACA CTACACTTTCCGTTGTTGTTGTTGTTGTTGTTGTGTTGTATGTATCTCTATCTATTTAACTTTCAATTTCAATCTCCAAA CTTTCACTCTCTCATTTTCCTTCACTATCATCATCATCATCATCATCATCATCATCATCACATGCATCTGCGATCTCTTC TTCTCATGCACCCTCACCCCTCTTTCTAGAACCAACCGAACCCTAATTCTCTCTCAGATCTCAATTCAATGGCGTCCAGT CCCCGCACCGTTGAAGAGATCTTCAAGGACTACACCGCTCGCAGAGATGCCATCCTTCGTGCTTTAACTCAAGGTCTCTG ATTCTCTCTCTGTTGTTCCCTTTTCAAAATTTAATTTCAATTCAATTATCCATTGAATAATGTTTCTGATTTTTATAATT TTTTCCTTCTCAGATGTTGATGAATTCTATGGACTCTGTGATCCAGGTAATGGGTACTCGCGGATCTGAATTGTTTTCAT TTCAATTTCAATTTTTGCTTTCTGTTTCAAAGTTATATTTTTTTTCCTTTTAATTTCGCAATTCTAGTTTCTTTTTGTAA ATTTCAGTTGTTTGAGTTGACTTTTTTCTGGGGAATTTCTGACCAAAAAAGTCAAAGTCTAGCATGGCCATGTGTGTGTG TTTTTTTTTGTAAAAATGATTTTTTTTTTGCACTACACAAACATACACACTCACTCTTTTGAACTAACAACTGTCTCTCT ATTAGTAGTTTATAGAATATATAAACTGATTAACAAACTAAGTCTGTTGTCTTATTGATAAGCTGGTGATGGGTTTTTTC AGTTTGTTAATCAATCTATTATATACCAATAATTGAGTCATAGAACCCGTTTGGATGCAGATTAAAGAACACTTATTTGA GCTTCTCGAGTGTTTTTTTCTAGTAGATAAGCTCCAATAATTGCTTTTTGGTCCATATCCAAACGGGCTCTCATACGCAT ATCTAACAGTATTAGAATAGTGTGATTTGGTTTGGAAATAATTTAGGTCTTGTGAAAATGTTGAACGCGAAGATGATTGG TTTTTTGCTTCTCCAGTGTTTGAATTTTGATTTGGGCATATGATTTTACTTTGACAGACTCGTGACTGGTTGAATAGAAT TCATGCTGCAAATGCTTTCTTATTTATTGTGGTTTTTATAACAAAGATTATGATTGTGAATCGCTGTGTTATTCCACTGA ATTCAATGTTTCCCTGGGGTGTCTTGTTTTAAGATAAGGAGAACCTGTGCCTCTATGGACATCCAAATGAATCATGGGAG GTGACTCTGCCAGCAGAGGAGGTTCCACCTGAGCTTCCGGAGCCTGCTCTCGGAATCAATTTTGCTAGGGATGGAATGAA CCGTAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCATTTTATCTTGGAGCTCGTC TTAACCGCAATGAAAGGTATTATCTAGCTTTTCTTGGGGTGTATGCATCTAGGGACACTTTAAGTTGGTCGTGGATCAGT ATCCATAATTTACATGTATAAAGCACCTCAATTTAAGTTGGTGTTGCTGAAGTCCATCAGCATCATCATGGATGAATTTC TTCAAAGAAATAAAGGCTATTTTTATTAATTGAGTGTGACTGTAGTTTCTTTATGGACTGTTGTGATTCTGGATATTTGT ATTATATATATACGTTGGATGGGCAGCAAAAGTGTCATAAGATGATTTTATCCTCCCAGCAAACATCAGGAGAGGTTTTC TTCTTATCTAAAAAATATCAAATCGAGATAAATAAATAAGAAACTCAGGATTAGTGATAGTGGTAGCCTTGGTGCCACGA TGGCTGCTGGTCCATGCCCAGCTGCTTGTGTCGAAGCTGACTCTGTACTCTTTAGCTTTAATTTTTAACTGTGTGTTCAT GTCGAATCACTTCTTAAATCTTAAGTCCTTTTCCTGTCCTCAATTGTGCTTTTCTTCCCTCCTTACAATTATGTGCGGTG TAAAGGGGATTATATGCCCTGAAGATTCTCAAGGAAAAATATATGCAAGTGAGTTTAACTTATCATTGGCATGTTAGAAC GTGTATGCTGTTGCTCTTGTTATTGCAGTTTTCCCTTATAGCTTTTCCACTCTCATGGGTTTCTTTGTTACAGCATTTTC CCTCACTTTCTGTTCTGAGATGGGCATATGCCTCCTTTATTTATTGATGGTTCCACTGATTCTTTATGGCAGGAAACGGC TATTTAGCTTGATCAATGATCTTCCCACCGTTTTTGAAGTTGTCACTGAGAGGAAGCCAATAAAAGACAAGCCCACTGTA GACAGTGGAAGCAAATCTCGGGGTGGCACCAAGGTTAGTGTTCCTGTTTGGTTTGGAGTACTGTTTTTCTTTTGCTGCAT AAGCAGAAGTTAGATGTTTTTATTCAAATACTTGGGTGAGGCCTTGTGCATTCTAAAAGTTTTTGATTGACGTTAAGGTA TTAGTGTCATTGCATCTTTGGAAGTTATTAAACTATTTTATTTCTCTCTTTTTTTTGGTGTTTATCTACTAAGTCAAACT CAAAGAAATACTTTTAAACATTGTTGTAGAACTGTAATAAAATGCCATTGACATGTTTATTTGTTCTAGTATTAGTGGTT AACTTTCAGAAGCAGCTTTGAGCACACTAAACTGGACCTTGGAGTTTCTGGATAGCAACTTTTGTCTTTGCTTATGTATA TGATCATTAAAATAGCAATCAAAGAGTACACTGAGACTGCATTTTTGAAACTCTTCGATCATGGTGTTTGTTTCATGTCA ATGCACTGTTAGCATCGATACACTTAGTCTAAGACTATATGAATTAAAGGTTTGGTAATGCGCTAAACCTTTCCATGCTG TTGTTATATGCTACATTCTTGTTCATTTATCTGCAGAGATCAAGTGATGGGCAAGTTAAAAGCAGCAACCCAAAGTTCGC AGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGCGAAACCCTCTGTGGGAGCTGCGGCGGAAATTACAATGCGGATG AATTCTGGATTGGATGTGATGTGTGTGAGAGGTGGTACCATGGAAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGC ATAAAGCAGTACAAATGCCCATCATGCAGCATGAAGCGGAGCAGGCCCTAGCAACAGGCAACATGAATAATGAATGCTGT GTCATATCTCTTGTAGAAGTTCCTGTCAGGGGTATAGTATCTATTTCTAATGGGCAATCTTGGAGATTAACTTAATTTCT TCTACAAAATTCTTAGAGTATGTTATATAATTTATGAATTTGCTTCTTTGAAGTGAGAAAAGCACTTCAGAGGGAAAAAA AATATAAAAATGATAACAGTTGATTGAAAAATTAATAGAGCACATTTTAACTTCATATTTTGTTATATTTATAGATATGT TATTTGTGATGATTTAAACTGTTTTTCTTTCATACTTCTAATATGCATTTCATCTCAAAGGATCAAAATACATAATTTAC GTCATAAAATAATCGTACATTATAGTTTGTTAATAAATTGATATTGTGCTTGTATTTCATGCATCGAAGTTTGAAGCTTT TCTTGATTCTTCTAGTCGCCCTATAAGTATGTTGCTTGATAGGTTAATGGAAGAGGTTTTATGTTATTCAGAAATGTTCA TGTGGTTGGTATAGTGGTAGGTAAACTTGATCCTCATAAGGAGGAAGGAGGATGACTCAAGTTTGAATCTGGAGAAAGTC ATACGTTAGAAAGGAGTGTTTGTCACAATTTTCTGAATGGGTTTACCCCGTCAAAGATCAAAAGAATCTTCTTGTGTTGC ATCATGTATGTCCATGATTTTCCATCTCATGGTTCATGGTTTATCCCCAAAGATGCATGTCTAGAAGTTAGAACTTATTA TTCTTTGTTCAAGGCAAATGTATTAGTTTAACACAGGTCTAAAATTATCAATTTCATTACTCCCACTGATGTGAACATAA TATAACACCTCACCTCAATCATGTGCCATCGTGAAACTTCATATGTGATCCAGAGCCATATGGTGTGTAACAAATGGTAA GACGACCATAACACTACCTACCAAACAGCTGAAGAGAGAAGGCCAACTCTATGGTTCCCATTCATATGAGTCTAAGATAC TTATTGTGAGTGAGGTCTGTATATTTTAGTCAGCTCTACATGGATTTCACCTAATTAAAGAGTGTCATAGAAAACATGGA AAAAGATATCATGGTGATCGAGATGAACATTAATAAGACTATGCAAATTATATCATAACATAAGAAGGGATTGTAAATAT TTCAAAGTGATTTAGTTTACAGGCTAAAGTATAGAGTTTTTCAGGGAATAGGTGAGTTTTTCAGGGAATAGGTGACAAAA CACTTTTTGTTTTGTCAAAAAGAGATAAATAACTTTTTTTTGGTCAATGGGTTCTGTATTATTTATTTTATTTATAAGCA TGGGTTTTGTATTATATTAAAAGGAGGAAAAATGACCATTACAAATACAAAAATAAACAGAACACTTCGACATGAGTCCA AAAAATAGGCATAGAAGCCCAAATTAGATTTACCCAATACAACAAAGCTCAACACAAATGAACATACAGACAAATAAGCT TGCTTGGGTGTGTATTCTATCAAGAGGACTAACAGAGGGGGTGTACAAAAAAGAAGACCCCAAGATCGCAGTTCCAGTTC TAGCTAGGAGCACTCCACCTGTCCCTGTGCTGGTTAGAGAGTTTTCCAGCGAGAGTAAATGCAGCGGATAACATAGCGAC TACCAAGGATGAGAAGTAAATGAAGGGTAGTTGCAGCAAAAAGAGAGGTATACCAGATTCAAGATCTAACCAAGCCTCAT ATCCTTCTGTAGAGCATTGACCAGGACGAGAGGAGGGCACCAGGACCAGTTTCGAGCTAGATTGCCCTAAAGACGGGCTT TGGCAGCAAGATGGGCCTCCCTGGGAGTCCATGTGAAAGCACAGAACTGGAATTGCTTTCTAATTCCATTATGCCCTCAA CAATGCCTTTGATGATTCCTATAGAGCTTTCCCCGTTACAAGCCTTCACCAAATCCTTGCAGTCCGATTCAATGATGACG TTGGCGTACCTTGTGTTGGCCAAGAAGGAGATAGCTTCACGGAATGCAATTGCTTCCCCCATAATTGCAGAATTGACATA GATTTATCCCTGTTATAAGGAAGCCACTACTATCCTTGATGATGAGACTAGTGGCCCCGTGGGGAGAAGTAGGGGAAAAG GCAGCATCAGTGTTGCATTTTACATAGTCCAGAGGTGGGTTTTTGGAATGTCTAGGTCATGCATGCCCACGGCCTGTGGT TTCTCTATGCCCTTTTGGACCAGCAGTAGTAGCACGGGGAGGGCGTTGTTTGCGATATCTGCCAGCAACCTTGAAGTATC CTCAATCACCCTCCTTGGGTTTGCGTTTGAGTTTCGGTTCTGGAAGCATGCATTGTTTCTGGCCTTCCATATCTGCCAGA GCAAGATTTCAACTTGGCTAACCTGCAAAAGCACAGTATCTTGATCGGGACCTTAGGCAAATCTTAGTAGAAGTTCTTGA AGCCATCCCCCGAAACAGGTGTTGGGCAGTTGGGCTCCATAACCGGAGCTAACTGCAGGGGGGGAGCCAAACCAGGCTGC CCTGGTCCAGCTACATTCAAGGAACGCATGGATGGTAGTTTCCTCAGCATGCTTGCAGACTAGGCAAGTTGGGTCATGCC CCATGTTTCTTCTTACCAGATTTCCCTTCACCGCCACTACATTGTGTGACAATTTCCAGTAGAAGACCTTGATTTTTGTA GGTATATTGGCATTCCATACCAGATGCCATGTCTTTGATTGAATTGGATTAGAAGAGGAAGGGATTTAATTACTTCTGGT TGGACATTTGTGAGCTTGTTTGTACCCTGACTTAACATTGTAGACACCATCCTTGACCATATGCCAAATCAGGGATTAAA AGAGATAAATAACTATATTGCAACTTTATTATATGGGCCTATTACTGGATATTCCGAATCCAAACTTGTCAATCTTTTTA AGGCCTTTTACTTAT
CDS sequence (LotjaGi3g1v0208200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCCAGTCCCCGCACCGTTGAAGAGATCTTCAAGGACTACACCGCTCGCAGAGATGCCATCCTTCGTGCTTTAAC TCAAGATGTTGATGAATTCTATGGACTCTGTGATCCAGATAAGGAGAACCTGTGCCTCTATGGACATCCAAATGAATCAT GGGAGGTGACTCTGCCAGCAGAGGAGGTTCCACCTGAGCTTCCGGAGCCTGCTCTCGGAATCAATTTTGCTAGGGATGGA ATGAACCGTAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCATTTTATCTTGGAGC TCGTCTTAACCGCAATGAAAGGAAACGGCTATTTAGCTTGATCAATGATCTTCCCACCGTTTTTGAAGTTGTCACTGAGA GGAAGCCAATAAAAGACAAGCCCACTGTAGACAGTGGAAGCAAATCTCGGGGTGGCACCAAGAGATCAAGTGATGGGCAA GTTAAAAGCAGCAACCCAAAGTTCGCAGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGCGAAACCCTCTGTGGGAG CTGCGGCGGAAATTACAATGCGGATGAATTCTGGATTGGATGTGATGTGTGTGAGAGGTGGTACCATGGAAAATGTGTGA AGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAGTACAAATGCCCATCATGCAGCATGAAGCGGAGCAGGCCCTAG
Protein sequence (LotjaGi3g1v0208200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSPRTVEEIFKDYTARRDAILRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDG MNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGGTKRSSDGQ VKSSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSMKRSRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 85 | 85 | - | – | |
| PANTHER | 2 | 237 | 236 | 4.5E-148 | – | |
| PANTHER | 2 | 237 | 236 | 4.5E-148 | – | |
| Pfam | 7 | 132 | 126 | 2.4E-66 | ||
| Phobius | 86 | 107 | 22 | - | – | |
| Phobius | 108 | 238 | 131 | - | – | |
| MobiDBLite | 138 | 176 | 39 | - | – | |
| MobiDBLite | 146 | 164 | 19 | - | – | |
| SUPERFAMILY | 173 | 236 | 64 | 4.65E-19 | ||
| Gene3D | 177 | 238 | 62 | 8.8E-24 | ||
| ProSiteProfiles | 182 | 234 | 53 | 9.392 | ||
| CDD | 184 | 234 | 51 | 1.701E-31 | – | |
| SMART | 184 | 232 | 49 | 3.0E-10 | ||
| ProSitePatterns | 185 | 231 | 47 | - | ||
| Pfam | 185 | 233 | 49 | 6.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi3g1v0208200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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