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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0417800 |
| Transcript ID | LotjaGi3g1v0417800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I1MJY1|I1MJY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82433668..82437856) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAATAAAAAGAAGAAAGAGTTGTTGTGAAGTGCAAATTCTGCAGACTGCAGAAGAAGCAGCAGCGAGAGAGAGAG AGAGAGCCACCACCACCACTCCTCCCACCTTCTCCTTCACTCTTCCTCTGTCAAATCTCCTTCAACCCTAAACGACTTCG TTTTCACCCTCTCTCTCTCTCTCTCTCTCTGCTTCCTCTGATTTCGCTTTCACTGCACCAGAGGAAGAAGCCATGGACTC GCGCGCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTCAGGGATTTCAAGGGTCGTCGCGCTGGTCTCATCAAAGCTC TTACTTCCGGTATATTCATAAAACCCACCATTTTTTTTCCATTTGAATTTCAAAGTTTTTTTTTTTAATTTCAATTTTTC AATTCAATTACTGTGTTCAACGCCGTTTTCGTAGTAAAGTAATGTGCTTTCTGTGTGAAGTTCTTGTTTTTTGATTTTAT TTTTCAATTTCGCTTAATGGGTCATCAAATCCGGGTGGGTTTTGTTTTTCAGTATCGCTGTTGTTGTTTTTGACAAGATT AAGGGGAATTTTCTTGAGTTTTGAATGAGAAAGTTTGGATTTTTTGAAAAATTTCACTGAAAAAAAGTGCGCCATGTTTG TTTAAATTGAGGAATTGACATGGTTGAGGTGTTTTGTTTTTGTTTTTGATTTTTACTTTAGTTTCTGCTGGAAATTTGAG TTTTCCTAAGCTGTGTGCAAATTTTTAGTGTTTGAGTATCTTGTGAACTTGCATTGTTAGGGTTTGATTTGTAAAACCCT AATTGTGCTTTATCATTCAAAATTGGTTTGATTTGAGAATTGGGTTGTTTTGTGTTGTTCTGGTCATTTTCCTTTTAGTT TGCTTGACTTAGGTTTGCGTTGCGCTTGATGCGGAGGATATTCTATATGTTAACTGGAAATTGATATACAATGCTTTGTT TTGCTTGTCATATTCTTATATTTTCCATTTAATTTATATTAACATTCATTTTCAATACTCGAATATGACATTCAGTACTT CACTACATCATTCAGCTTTTATGTTTACTTATAAGTTTATATATATGAAGCTTTTGAAAGCTTTTCCATACTGATGAACT TTTTTCTGCTTGGTCATGCTGTTGCAGATGTTGAAGATTTCTATAGCCAATGTGATCCTGGTCAGTTACTCTCTCTTTTC ACGGTCTTTGTGTGCCGCATCATTTATGTTTTGGAATAGTAAATTGGTTTTTAACTTGCTGGGGGCTGATTGCAATTGGG GCCTTTATAAAATTTAATTATCACTCTGTTGATTTATTGTTGTATTCGAAGGATTTTTTGCTGAGTGCAGGTTTGATTAT TATTGGTTTCTTGGGTTTGCACTTAGTTTCACACTTTTCTTCTTTAATATATGTACTGCAGTTAATCTTATGAGATGCTT CTATTTTAAAGTCTTCAAGTTATTTGATCTCAAGATTAATTTACACCTCTTCGTTCTTGCCTCAAGGAACATCATCTAAA ACTAGCTAATATGTTCTATTCCTCTCTAATAGTAATTCCTTTGTGGTGTCTTGAGTTGGAGCTTAGTTATGTGTTTCGTC TTAAAGTTAACTGTTCTTTGTCATGTGATTTTGTTACCCTGAATTCTGATGTGCTGGGTTTTGTACTGCGTTCCTTGTGC TGGGTTTTGTTATTTTGAATACTGATGTGCCGGGTTTTGTTTGCTTTATATGTTTAAATGTAATTACAGATTGTATTCAA GAATAATGTAAAGGTTGAATATAGTAAACAATATGATGAGCTGAATGACACTAGGGATTGGCATGGTGCAAAGTTTTAAC CATGAAGTCCATGAGTTGTTACTCTGTTGCTATAACTTGATTATCAATTTTGGTTATTGACCATTCTTAGGGTGATTGCA TTGCCAACCTATCATGTCAATATTGTTTTCGCATTTGATGCTTTGATACTTCTCAAAATTCTCTTGATTGTAAAGTTTTC TTTGGAAATAAAGATATTATTATGCAGCTCTTCTAGCTGTAAAGAAAATACTGTATATAAAGGATTACAAAATGTTTGTA GGGATTATAAGTTTATAATGTTTTCCTTTTTAGGTATTTTATTTGGTACTTGTGTTTTATAAATCAGTTACTTGATTCTT TCAGAGAAAGAGAATTTGTGCTTGTATGGCTTTCCAAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACC AGAACTTCCTGAGCCTGTGCTAGGCATTAACTTTGCTAGGGATGGCATGCACGAAAAAGATTGGTTATCCCTAGTTGCTG TCCATAGTGATGCATGGTTACTTGGTATTGCCTTCTATTTCGGAGCCAGATTTGGGTTTGACAAAGCTGACAGGTACTGC ATACTCTAACCTATATTCTTATCTGCAGTTAACTATAAAAAAGATGACTTAGGATGGTTGACAATAACAAAGAAGTTAGG GTTTTGCTTGTCTGAGTGATCACATTGGTTCAGTTCTTTCTTTATGTTTCTTATTCATCCATGTACTCATGATTTGCATT TGTAATGCAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAA CAAGTTAAGGAGAAGTCTTCAGCTTCAAACCACAGCGGCAGCAAATCCAAGTCCAGCTCTAAAGCAGTAAATATTTCTAT CCTCTCAACTACGTGTGACAAATACATCTATTTTTCATGCATCCTTGTTTCTGTGCTGGAATGGTGAAATAGTATTTAGT GTGTGGGGTAGATCTATATCATTTTCAGAAGATAAATCTACTACCAAACTGGTTGCTAATACAAGAATATTATAATGTAA GAGGGAGGAGAGGGATTTTTCCAAACCTTCCTGTTTTGGTTCAAATTTTGGAAGGGGAGGGGAATGTAGAGCCAAAATCC CTCTCAACTCAATTTTATCTTCCCTCCAAAAGTGGGGGCATTTGGAAGAGAAATGATTTGTGTGATTAAAAGGTCCTTCC TCATATTTTAAAACCCAAAATTGTATTTTAAAAGTAAGGGCAATAAAAGTAAATTTGCTTTTCTGACTGATAGTGGTACG ATTATATCACGTTAATGTTTTTAAAGTCTATTTCGGAACTTGGATGCCATGGTTTAAATAGAATATGATTCTGCAATTTC ACTACAAAGTTGTGTGGGTTGGGTATAGAAATACTCAGACTCTTATTATAGGGTTCTCTTTTATTCCTTAGCTAGTTTGT TTTCTCACTCAATTGTTGGCTGGTGGTGCAGCGGGCTCCAGAATCTCAGGTTAGGCAGTCAAAGCCATTGCCACCAAAAG ACGAGGATGAAGAACTGGATGAGCAAGATGACGATGATGATGATGAGGAGGATGATGATGAGCATGGAGAGACCTTGTGT GGGGCTTGTGGTGACCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTTCACGGGAAGTG TGTGAAGATCACTCCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCACTAACAAGAGAGTTCGCACTT GACAATCTTTGTTGGAGTATTTGCTGATTATGTTGTTTTGCTATTGTTCTTAGATTTTGCAGTTAAATGGATAGTTTCTG TTGGACACGTGTAGGTTTCTTTTCTAGTCTTTAGGATTCTGCTGTGCTGGTTTAATTTATGTCAGCTGCAATTCAGTTGA TGCCTTGTGTTTGTTCAATTTGTAGTTTATGCAGTGATGACTGGGAAAGTGAAGTTTTTTTTCCTGAATGTTAAGGGGAA ACTAGGGTAATTAAACAGGAATTTATTTGAAATGATGTTATGATGTTGTTGCTAGTTTGCTTACCTGGTCAGCCATTTTG CATGCGTTTATAAGGCTGGACGGATTAAAGATCTTTGGTTTTTAAATGATGTCTTAATTTTCTGTTCCACCAATGAAATC TTGTCATGTCAATTTAAAAAGACAATGGACAGTTACAATTTACAAAGCTAGACATGTCGAAACTTTATTAGTAGAACAGA GAATGAGATACAGTTTGGGGACTACAGATTTCTGGATCTAGGAAGATTGTTGCAACGTTCAATTGAGGCGATTGCATCTT CCCATTGGCATTCGATGAGGAATTGGCTA
CDS sequence (LotjaGi3g1v0417800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCGCGCGCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTCAGGGATTTCAAGGGTCGTCGCGCTGGTCTCAT CAAAGCTCTTACTTCCGATGTTGAAGATTTCTATAGCCAATGTGATCCTGAGAAAGAGAATTTGTGCTTGTATGGCTTTC CAAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCAGAACTTCCTGAGCCTGTGCTAGGCATTAACTTT GCTAGGGATGGCATGCACGAAAAAGATTGGTTATCCCTAGTTGCTGTCCATAGTGATGCATGGTTACTTGGTATTGCCTT CTATTTCGGAGCCAGATTTGGGTTTGACAAAGCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATAT TTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGCTTCAAACCACAGCGGCAGCAAATCCAAG TCCAGCTCTAAAGCACGGGCTCCAGAATCTCAGGTTAGGCAGTCAAAGCCATTGCCACCAAAAGACGAGGATGAAGAACT GGATGAGCAAGATGACGATGATGATGATGAGGAGGATGATGATGAGCATGGAGAGACCTTGTGTGGGGCTTGTGGTGACC ATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTTCACGGGAAGTGTGTGAAGATCACTCCT GCTAGGGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCACTAACAAGAGAGTTCGCACTTGA
Protein sequence (LotjaGi3g1v0417800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTSDVEDFYSQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINF ARDGMHEKDWLSLVAVHSDAWLLGIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSASNHSGSKSK SSSKARAPESQVRQSKPLPPKDEDEELDEQDDDDDDEEDDDEHGETLCGACGDHYGTDEFWICCDICEKWFHGKCVKITP ARAEHIKQYKCPSCTNKRVRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 89 | 89 | - | – | |
| PANTHER | 4 | 260 | 257 | 3.0E-145 | – | |
| PANTHER | 4 | 260 | 257 | 3.0E-145 | – | |
| Pfam | 11 | 138 | 128 | 1.5E-66 | ||
| Phobius | 90 | 111 | 22 | - | – | |
| Phobius | 112 | 261 | 150 | - | – | |
| MobiDBLite | 145 | 203 | 59 | - | – | |
| MobiDBLite | 150 | 170 | 21 | - | – | |
| MobiDBLite | 184 | 203 | 20 | - | – | |
| SUPERFAMILY | 196 | 258 | 63 | 5.09E-17 | ||
| Gene3D | 200 | 261 | 62 | 5.5E-24 | ||
| ProSiteProfiles | 205 | 257 | 53 | 9.374 | ||
| SMART | 207 | 255 | 49 | 5.5E-9 | ||
| CDD | 207 | 257 | 51 | 1.47677E-30 | – | |
| ProSitePatterns | 208 | 254 | 47 | - | ||
| Pfam | 208 | 257 | 50 | 4.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi3g1v0417800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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