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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0417800 |
| Transcript ID | LotjaGi3g1v0417800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|A0A151T9G0|A0A151T9G0_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0417800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82433900..82437269) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACTCGCGCGCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTCAGGGATTTCAAGGGTCGTCGCGCTGGTCTCAT CAAAGCTCTTACTTCCGGTATATTCATAAAACCCACCATTTTTTTTCCATTTGAATTTCAAAGTTTTTTTTTTTAATTTC AATTTTTCAATTCAATTACTGTGTTCAACGCCGTTTTCGTAGTAAAGTAATGTGCTTTCTGTGTGAAGTTCTTGTTTTTT GATTTTATTTTTCAATTTCGCTTAATGGGTCATCAAATCCGGGTGGGTTTTGTTTTTCAGTATCGCTGTTGTTGTTTTTG ACAAGATTAAGGGGAATTTTCTTGAGTTTTGAATGAGAAAGTTTGGATTTTTTGAAAAATTTCACTGAAAAAAAGTGCGC CATGTTTGTTTAAATTGAGGAATTGACATGGTTGAGGTGTTTTGTTTTTGTTTTTGATTTTTACTTTAGTTTCTGCTGGA AATTTGAGTTTTCCTAAGCTGTGTGCAAATTTTTAGTGTTTGAGTATCTTGTGAACTTGCATTGTTAGGGTTTGATTTGT AAAACCCTAATTGTGCTTTATCATTCAAAATTGGTTTGATTTGAGAATTGGGTTGTTTTGTGTTGTTCTGGTCATTTTCC TTTTAGTTTGCTTGACTTAGGTTTGCGTTGCGCTTGATGCGGAGGATATTCTATATGTTAACTGGAAATTGATATACAAT GCTTTGTTTTGCTTGTCATATTCTTATATTTTCCATTTAATTTATATTAACATTCATTTTCAATACTCGAATATGACATT CAGTACTTCACTACATCATTCAGCTTTTATGTTTACTTATAAGTTTATATATATGAAGCTTTTGAAAGCTTTTCCATACT GATGAACTTTTTTCTGCTTGGTCATGCTGTTGCAGATGTTGAAGATTTCTATAGCCAATGTGATCCTGGTCAGTTACTCT CTCTTTTCACGGTCTTTGTGTGCCGCATCATTTATGTTTTGGAATAGTAAATTGGTTTTTAACTTGCTGGGGGCTGATTG CAATTGGGGCCTTTATAAAATTTAATTATCACTCTGTTGATTTATTGTTGTATTCGAAGGATTTTTTGCTGAGTGCAGGT TTGATTATTATTGGTTTCTTGGGTTTGCACTTAGTTTCACACTTTTCTTCTTTAATATATGTACTGCAGTTAATCTTATG AGATGCTTCTATTTTAAAGTCTTCAAGTTATTTGATCTCAAGATTAATTTACACCTCTTCGTTCTTGCCTCAAGGAACAT CATCTAAAACTAGCTAATATGTTCTATTCCTCTCTAATAGTAATTCCTTTGTGGTGTCTTGAGTTGGAGCTTAGTTATGT GTTTCGTCTTAAAGTTAACTGTTCTTTGTCATGTGATTTTGTTACCCTGAATTCTGATGTGCTGGGTTTTGTACTGCGTT CCTTGTGCTGGGTTTTGTTATTTTGAATACTGATGTGCCGGGTTTTGTTTGCTTTATATGTTTAAATGTAATTACAGATT GTATTCAAGAATAATGTAAAGGTTGAATATAGTAAACAATATGATGAGCTGAATGACACTAGGGATTGGCATGGTGCAAA GTTTTAACCATGAAGTCCATGAGTTGTTACTCTGTTGCTATAACTTGATTATCAATTTTGGTTATTGACCATTCTTAGGG TGATTGCATTGCCAACCTATCATGTCAATATTGTTTTCGCATTTGATGCTTTGATACTTCTCAAAATTCTCTTGATTGTA AAGTTTTCTTTGGAAATAAAGATATTATTATGCAGCTCTTCTAGCTGTAAAGAAAATACTGTATATAAAGGATTACAAAA TGTTTGTAGGGATTATAAGTTTATAATGTTTTCCTTTTTAGGTATTTTATTTGGTACTTGTGTTTTATAAATCAGTTACT TGATTCTTTCAGAGAAAGAGAATTTGTGCTTGTATGGCTTTCCAAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAA GTTCCACCAGAACTTCCTGAGCCTGTGCTAGGCATTAACTTTGCTAGGGATGGCATGCACGAAAAAGATTGGTTATCCCT AGTTGCTGTCCATAGTGATGCATGGTTACTTGGTATTGCCTTCTATTTCGGAGCCAGATTTGGGTTTGACAAAGCTGACA GGTACTGCATACTCTAACCTATATTCTTATCTGCAGTTAACTATAAAAAAGATGACTTAGGATGGTTGACAATAACAAAG AAGTTAGGGTTTTGCTTGTCTGAGTGATCACATTGGTTCAGTTCTTTCTTTATGTTTCTTATTCATCCATGTACTCATGA TTTGCATTTGTAATGCAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCTG CAAAGAAACAAGTTAAGGAGAAGTCTTCAGCTTCAAACCACAGCGGCAGCAAATCCAAGTCCAGCTCTAAAGCAGTAAAT ATTTCTATCCTCTCAACTACGTGTGACAAATACATCTATTTTTCATGCATCCTTGTTTCTGTGCTGGAATGGTGAAATAG TATTTAGTGTGTGGGGTAGATCTATATCATTTTCAGAAGATAAATCTACTACCAAACTGGTTGCTAATACAAGAATATTA TAATGTAAGAGGGAGGAGAGGGATTTTTCCAAACCTTCCTGTTTTGGTTCAAATTTTGGAAGGGGAGGGGAATGTAGAGC CAAAATCCCTCTCAACTCAATTTTATCTTCCCTCCAAAAGTGGGGGCATTTGGAAGAGAAATGATTTGTGTGATTAAAAG GTCCTTCCTCATATTTTAAAACCCAAAATTGTATTTTAAAAGTAAGGGCAATAAAAGTAAATTTGCTTTTCTGACTGATA GTGGTACGATTATATCACGTTAATGTTTTTAAAGTCTATTTCGGAACTTGGATGCCATGGTTTAAATAGAATATGATTCT GCAATTTCACTACAAAGTTGTGTGGGTTGGGTATAGAAATACTCAGACTCTTATTATAGGGTTCTCTTTTATTCCTTAGC TAGTTTGTTTTCTCACTCAATTGTTGGCTGGTGGTGCAGCGGGCTCCAGAATCTCAGGTTAGGCAGTCAAAGCCATTGCC ACCAAAAGACGAGGATGAAGAACTGGATGAGCAAGATGACGATGATGATGATGAGGAGGATGATGATGAGCATGGAGAGA CCTTGTGTGGGGCTTGTGGTGACCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTTCAC GGGAAGTGTGTGAAGATCACTCCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCACTAACAAGAGAGT TCGCACTTGA
CDS sequence (LotjaGi3g1v0417800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCGCGCGCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTCAGGGATTTCAAGGGTCGTCGCGCTGGTCTCAT CAAAGCTCTTACTTCCGATGTTGAAGATTTCTATAGCCAATGTGATCCTGAGAAAGAGAATTTGTGCTTGTATGGCTTTC CAAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCAGAACTTCCTGAGCCTGTGCTAGGCATTAACTTT GCTAGGGATGGCATGCACGAAAAAGATTGGTTATCCCTAGTTGCTGTCCATAGTGATGCATGGTTACTTGGTATTGCCTT CTATTTCGGAGCCAGATTTGGGTTTGACAAAGCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATAT TTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGCTTCAAACCACAGCGGCAGCAAATCCAAG TCCAGCTCTAAAGCATTGCCACCAAAAGACGAGGATGAAGAACTGGATGAGCAAGATGACGATGATGATGATGAGGAGGA TGATGATGAGCATGGAGAGACCTTGTGTGGGGCTTGTGGTGACCATTATGGCACTGATGAATTCTGGATTTGCTGTGACA TCTGTGAGAAGTGGTTTCACGGGAAGTGTGTGAAGATCACTCCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGCCCA TCATGCACTAACAAGAGAGTTCGCACTTGA
Protein sequence (LotjaGi3g1v0417800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTSDVEDFYSQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINF ARDGMHEKDWLSLVAVHSDAWLLGIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSASNHSGSKSK SSSKALPPKDEDEELDEQDDDDDDEEDDDEHGETLCGACGDHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCP SCTNKRVRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 249 | 249 | 5.1E-146 | – | |
| PANTHER | 1 | 249 | 249 | 5.1E-146 | – | |
| Phobius | 1 | 89 | 89 | - | – | |
| Pfam | 11 | 138 | 128 | 1.3E-66 | ||
| Phobius | 90 | 111 | 22 | - | – | |
| Phobius | 112 | 249 | 138 | - | – | |
| MobiDBLite | 145 | 191 | 47 | - | – | |
| MobiDBLite | 172 | 191 | 20 | - | – | |
| SUPERFAMILY | 184 | 246 | 63 | 4.65E-17 | ||
| Gene3D | 188 | 249 | 62 | 5.1E-24 | ||
| ProSiteProfiles | 193 | 245 | 53 | 9.374 | ||
| SMART | 195 | 243 | 49 | 5.5E-9 | ||
| CDD | 195 | 245 | 51 | 1.81102E-30 | – | |
| ProSitePatterns | 196 | 242 | 47 | - | ||
| Pfam | 196 | 245 | 50 | 3.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi3g1v0417800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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