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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0002700 |
| Transcript ID | LotjaGi4g1v0002700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT2G02470.1 alfin-like 6; Swiss-Prot: sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1; TrEMBL-Plants: tr|K7L425|K7L425_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:590705..594495) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATTTATATATACAAGGACTAGAAAACTAGAAAATCTCTTGTGTTTAATTTGAATGGCATATTTATTTTGACGGGA TAAGCACATGACATCCATTCCAATGTACCTGTTTCTAAACCTTGTTGTTACTACTGTGAGATAGAAGATAGAGAGGAAAG ACAAGAAAAAGAAAACCCTAGCCAACAAAAAAATTGGTTTATTTGATTTGGGGGTTCATGTCAGAAATGATTTGGGGGTA AATTAAGCACATAACATTACAGTATTTATAGCAGCGAGCACTGAAATTGAAATTGTGGGTGGAGACTGGAGAGGAGAGAA AGAGGGGGAGAGGAATGGAAGCAATACCGCACCCAGTACCCAGAACTGTTGAAGAGGTTTTCAGCGACTTTAAGGGAAGA CGTGCTGCTCTCATCAACGCCCTCACCACTGGTTCGCTCTTTCTTTCTTTCCTCTCATTTTCCTTCTTTTCCTTTTCCCT CACCATCCTTCTTGTTGTTGCAGACGTTGACAAGTTTTACCAACAGTGCGACCCTGGTGGGTTTTCTCTCTCTCACTCGC ATATGCAACAGATTCATGATTCCATTCTGTTGACTCATTATTTCAATTATTTTGTCATTGTAGAGAAGGAGAATTTGTGC CTGTATGGATTTCCAAATGAAACATGGGAAGTCAATTTGCCCGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCTGCTCT AGGTATCAACTTTGCTAGGGATGGTATGCATGAGAAGGACTGGTTATCCCTCGTTGCAGTTCACAGTGACTCTTGGCTGC TTGCTGTTGCTTTCTATTTCGGTGCTCGCTTTGGATTTGGCAAGACCGAAAGGTAAGAATAACTTCTTCGCTTTATCATT AGCTTAGTCTCTTTGTAAATTGCAATGTTCATTCATGTTATTCTTGTGTAGTGTGTACTCATGGATGGCTTATAACTAAT AGTGCTCTTTCTCTCATTTCTCTCTCATTCCTTGTTAAGAAAGTCATAATGCAGAAAGCTAGAAAAGCCAATTTTGGACT TGACTTCTTTATGTGTATTCTTTCTCATGCCTGAAGGTTTATGTTTTCTGGATACTGCATGTTCTATCACTTTTCTTTCT CACCACTTCTAGATGCTGACTGGCCATGTCTGTGTGCCTTTTCAGAATATAAATATATTATCCAATTATGTGCAAAGACT ATCTTATTTCATATTCGTCAGTCTTACTATTGTTTATACTTTCCTAGTACCATCATGTTGTCAAATTTTCTCCATGTCAA TTAAGAGCCACTTCGTTTTCTCTGTGTTGACACGGCTTCTTTTTTAATAATCTTTTTCCACTTTCAGTTTTTAATTTCCA TCACTTACACTGTTTGCTTCATGTCATGGAACTTGTAACTCTTATGAGGTTTAAAATATTTCTTCATGAAGTTTTGAGGT TTAGACTTTGTTGATACATGGTTGGTTAATACTAACTTAAACCTGTTTTCCTCCCTTTCTTGAACACACACGTTATAGTT CTCCATGTTGCATGCTTTTAGTAAGGATTAGTTCAAGGTAGAAATTCTGGGTAGGGGGCCGATGCATCCACTAGTACGGT GAATTATTAATGCTTAAAAGCTAATGGACAACAAACACCTTTCACCTCAGTTTTCATATTGATAGACTATAGCTTAATGC CATGACGGCCTTGGAAATAATGTATTCTTGATTGGTAGATATGCTTTTAGACGTGTGTGTCTGTGCCTCCTATGGTAACT GATTCTTAGTCTTAAGCTAGAATTTGATCTTTCATTAGCTATTGAAAACCAATTTCCATGCTGTCAGCTGCATTAATCAT TAAGTATATTATTACATAGCTCATCACAAATTTTTTTTTATTACATGGCTGATTTATTCTTAAATACTTTTTTCTGTCTC AAATTGGATAGATTGAAAGCCATCTACTTATATACTATGGAGTGTATCCAAGTTCCTCATTGGATCTCGTTTTCACTATC TGTTGACAAATCTTAAATGTGAACAAAATTAGTCTGATCAAATGCAATACTGTAATGAAGAAAGGAAAAAATTAAAATGC CTATGTTTAAATGGATATTCACAGGAAAAGGCTTTTTCAGATGATAAATGATATGCCGACTATCTTCGAGCTTGTGACAG GAGCTGCTAAGCAATCAAAGGACCAACTGGTTGCTAACAACAATGGTAGTAAGTTCAAACCAAGTGGAAAGGTATGCGGT TTTCCATTTATGTTCTAGTTTATGTTTCTATCACTGCCCTTGTGTGGAAAGTCACTTAGATATGTTCCTGTTTGGATACT TCCTTTGTACAGTCCCACCCATCTGAGCCTCAGGCCAAGGGAATGAAGATGTCTGCACCACCTAAAGAAGAGAATGAGAG TGGAGAAGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGCGCTTGCGGTGAGAATTATGGCACTGATGAATTCTGGA TCTGTTGTGATATGTGCGAGAGATGGTTCCATGGTAAATGTGTCAAAATTACTCCCGCTAAGGCTGAGCACATCAAGCAG TACAAGTGTCCAAGCTGTAGCAAGAGGGCAAGAGTTGGGTGAAAGCTCTGAAACTTTGGACCAGTGACAGTTTAAAGAAG AGCAAGCTTCAAAGTGTCTGATAACATATTTACAAGTGAAAAACATTGTTACCTGTCCTAGTCAATGCTCTTTAATCACT ATGCGGAATTTCAAGTTTTGTTACTTTTCATTTCTACTGTCTAATCTTCGGAATTGTGTTTTTAAGTAGTCATTGGCAAC AACAATACTATATTATGATATATATTTTGCAGCTTTTATGCATTTTTTTAATGTTGAAACCAAAGTGGTATTCCGCCTCA CTGGGATTCAAGTCCAAGGTTAAGTAATCCTCCTACGGACTTCATTGCTGCTCGAGGCAAGGCTCTTGGTCAAGGTGTAC ATACCAGGCCTGTGCATCTTTGATTTTGAATTTAGAAAGAAAAGAGCAGGGTACTGAAAATTTGCAACATTTTTTTAAAG TGAGGATTCTTTTTAGCAGGTTTTTGAAGAAATCTTTGAGGGAACTCAAGCATGAATGTTCCAACTGTTGGCATTTTTAG ATTGAGCTACTATGGGGAAATATTCTCGAGTCTTCTCTTGTATTGAGATCTCAATTAGTTCCCCTTTCCTGTTTTGATGT AAGGATTCTTTTTAACAGGTTTTTGAAGAAATCTTTCAGGGAACTGAAGCATGAATGTTTCAACTGTTGGCATGCTTAGA TTGAGCAACTATGGGGAAAGATTCTCGAGTCTTCACTTGTATTGAAGTCTCAATTAGTTCCCCTTTCCTGTTTTGACGTT TTGTGTGGTGAACAGTAGGACATAATTTGAATATTGGTCGTAAGTTGTAAGTCAGAATGTTTCATATTCAATACTGACAT TCCCTTGAACAGTAGGACATAATTTGAATGTTCAATATTGAATACTGAGTACTGACATTCCCCCTCCAAATTCTGTTCTA CCACTTTCTGAGGCTTCAAAATTGAAGATTAAACCACTCTGAAAAACAAAGATGTTTGCTCCTGTTCTCTGTATTTCTGC TTGTTACTATCTTAAGTTTTTCCTTTGCTATGTTTTATTTTCAGTGTGTAGTTTCTTCAGAAAGCCTGTTATTAAGAAGA ATATAAGGAAACACACCATTGATAATGAAGATGATGAGGGCGACTCAAACAGCGAAAGCTCTTTATTGCACCTTTCCTCC GGCTCTACAAAAACTTCTGCATCTGCTGAAC
CDS sequence (LotjaGi4g1v0002700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAATACCGCACCCAGTACCCAGAACTGTTGAAGAGGTTTTCAGCGACTTTAAGGGAAGACGTGCTGCTCTCAT CAACGCCCTCACCACTGACGTTGACAAGTTTTACCAACAGTGCGACCCTGAGAAGGAGAATTTGTGCCTGTATGGATTTC CAAATGAAACATGGGAAGTCAATTTGCCCGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCTGCTCTAGGTATCAACTTT GCTAGGGATGGTATGCATGAGAAGGACTGGTTATCCCTCGTTGCAGTTCACAGTGACTCTTGGCTGCTTGCTGTTGCTTT CTATTTCGGTGCTCGCTTTGGATTTGGCAAGACCGAAAGGAAAAGGCTTTTTCAGATGATAAATGATATGCCGACTATCT TCGAGCTTGTGACAGGAGCTGCTAAGCAATCAAAGGACCAACTGGTTGCTAACAACAATGGTAGTAAGTTCAAACCAAGT GGAAAGTCCCACCCATCTGAGCCTCAGGCCAAGGGAATGAAGATGTCTGCACCACCTAAAGAAGAGAATGAGAGTGGAGA AGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGCGCTTGCGGTGAGAATTATGGCACTGATGAATTCTGGATCTGTT GTGATATGTGCGAGAGATGGTTCCATGGTAAATGTGTCAAAATTACTCCCGCTAAGGCTGAGCACATCAAGCAGTACAAG TGTCCAAGCTGTAGCAAGAGGGCAAGAGTTGGGTGA
Protein sequence (LotjaGi4g1v0002700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAIPHPVPRTVEEVFSDFKGRRAALINALTTDVDKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINF ARDGMHEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDMPTIFELVTGAAKQSKDQLVANNNGSKFKPS GKSHPSEPQAKGMKMSAPPKEENESGEEEDDDEQGATCGACGENYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYK CPSCSKRARVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 250 | 250 | 4.3E-154 | – | |
| Phobius | 1 | 89 | 89 | - | – | |
| PANTHER | 1 | 250 | 250 | 4.3E-154 | – | |
| Pfam | 11 | 138 | 128 | 2.5E-66 | ||
| Phobius | 90 | 111 | 22 | - | – | |
| Phobius | 112 | 251 | 140 | - | – | |
| MobiDBLite | 150 | 194 | 45 | - | – | |
| SUPERFAMILY | 187 | 247 | 61 | 2.88E-18 | ||
| Gene3D | 190 | 250 | 61 | 1.9E-24 | ||
| ProSiteProfiles | 195 | 247 | 53 | 9.597 | ||
| SMART | 197 | 245 | 49 | 1.3E-10 | ||
| CDD | 198 | 247 | 50 | 5.00911E-30 | – | |
| ProSitePatterns | 198 | 244 | 47 | - | ||
| Pfam | 198 | 246 | 49 | 1.4E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi4g1v0002700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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