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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0228100 |
| Transcript ID | LotjaGi4g1v0228100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr|K7KMT9|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi4g1v0228100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53784477..53787804) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGCTAAAAAAAACAGTTATTATCCAAGAATCCAAATCCCTAAAATCACCCCATTTGAGTGAAGAGTGCCAAGTGAAG TGAATCCTTTGTGGCAGAATTGGATAGAACTTAACATGAGGCCCTCTTTCACTCACCACACAAGATAACACAACACACCC ATTTCCAAACCCTCCTTCTATCTTCTTCTCTTCTCCTTCCTAATCCATTCCCATTCCAAAACCTCCCCTTCAATCCAACC AACAATGGCAATTTCAGCAGCTTCTGCAACTTCTTCTTCCTCCAAATTCCTCCACCCACACCCTTCTCCTTCTTCCTCTC ACTCTCACTCCTCTTCCCCCTGCCTCTTCCTCAGACCCCAATTACCCACCACCCACCTCTCCTCCTCCTTCAATCCTTCC ACAATCCTCCTCAACGCGCCGCCGCAACAACCCTCCGCCCCCTTCCACCGCCGCTCCTCCTCCCTCACCGTCCGCGCCGC TCGCGGCAAGTTCGAGCGCAAGAAACCCCATGTCAACATCGGCACCATCGGCCACGTCGACCACGGCAAAACCACCCTCA CCGCCGCCCTCACCATGGCCCTCGCTTCCCTCGGAAACAGCGCCCCCAAGAAATACGACGAAATCGACGCCGCCCCTGAA GAGCGCGCTCGCGGTATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAATCGCCACTATGCTCACGTTGACTG CCCCGGCCACGCTGATTACGTCAAGAACATGATTACCGGTGCCGCCCAGATGGACGGCGCTATTCTTGTTGTCTCCGGCG CCGACGGCCCTATGCCGCAGACCAAAGAGCACATCCTCTTGGCGAAGCAGGTTGGTGTACCTAACATGGTGGTTTTCCTC AACAAGCAGGACCAGGTTGATGATGAGGAGCTTCTGCAACTCGTTGAATTGGAGGTTCGGGAGCTTCTATCGTCTTACGA GTTCCCTGGGGATGATGTTCCCATTGTTTCTGGTTCTGCCCTTTTGGCTCTTGAAGCTCTAATGGCGAACCCTGCTATCA AACGTGGTGAGAATCAGTGGGTGGATAAGATTTATGAGCTTATGGATAATGTGGATAGCTACATTCCTATCCCTCAGCGC CAAACCGATCTTCCGTTTTTGTGTGCCATTGAAGATGTGTTTTCCATCACGGGTCGTGGAACCGTGGCCACCGGGCGTAT TGAGAGGGGGTTGGTTAAGGTTGGTGACACGGTTGAGATTGTTGGTGTTAGGGAAACTAGGACCACTACTGTGACTGGGG TGGAGATGTTTCAGAAGATTCTGGATGATGCCATGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGGTT GATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACTATTACACCACACACCAAGTTTTCTGCGATTGTGTACGTGTT GAAGAAGGAAGAAGGTGGGAGGCACTCGCCTTTCTTTGCTGGTTACAGGCCACAGTTCTACATGAGGACTACTGATGTCA CTGGCAAAGTCACGGCCATTATGAATGATAAGGATGAGGAGTCCAAGATGGTGATGCCCGGAGACCGTGTTAAGATGGTG GTTGAGCTTATTGTTCCAGTGGCTTGTGAACAGGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGG TGTTATCCAATCGATCATTGAGTGAATTGTGAGATTGGCGTCCAATTTACATAAGTCTTACATGTTGGACAGAATCACTG TTATCGGTTTGTGCAATTGTTTCTTTTTGCCATTTTACATAGCTTCTGTCATATCTGTTTTCTAATGTTTTGTAGGATTT TAGATGATGGTTAATCAAGTTGGATAATGAATTTTCAATGCTTTGTTTGACTTCTCTTATATTGTGTCAATTCATCTGTC AAGTACTTGAGCTAGATTTTGCCTGGAATTATGAGATCTTTTCTCTTCAGTTTGAATGTAGAAGGGACTTTTCTCTCCTT GCTTAGGAGTTAAAGCTGAACTTAAAATAAAGTGATGTTTTTCTTTTGAAGTTAAATTGAATGAACTGCAACTTCCCTCC CTATTTACCCCTGAATATTATTACAAACAGAAAAGCAGAGAGAGGGAAGAACTCAATCTGAGTTCTGAAAATGATTGAGA GTTTTCTATGTCGAATTCTATAAGCTACACCCATATTCATAGCTGAGCTGTGGTGCACCTTGGACTCTTGGTAACCACAT TCTATTACAATAGCCCCATCAGGATGGCTTAACTCAGCTGACAAGTCTAAATTCCCAACTGTAATGAGAGCTTGCTAACT ACCCATGACACTGAGCATATTTCCACTGTGCAAGTTCAGGCTACCTACATAGGTTAATTTACACAACACGCACTCAAGCT GAGGTGAACTGAGAGAACATAGGAAAACTGTAATTGTAATACTTAAGAAATTCAATGTTGGATGAATTTTGGGAGTTTGA GGGGTTGGCTCATTTTCACCTACCATTCTCTTATAATATGCAAGCATAGCACTGCCTTTTAGTTTGCAATGATGCGACTT TACAATATTGTGGTTGCTCCTCTCTGCCTCTCTAAGACCCCCTCCCCTACCTTTTAAGGCATGTAGAAATAATATAGTTG GTCTTCAATATTCTGAGACAGTTGGTGTTCATCACACTTCATTTTGTGTGGTAGAAGTCTTACTGAAATTTGATTTTGGA TGTACAAGTCTTTCTTTCAAAGAAATATGCAATAGACCAATCAATTGCTTATCTTAGTAGGGCTATATTTGACTGGGCTA TGAAAACATGTTTCCTGGTACATCCAGATAAGAGGCCCTCATTCATATCCAGAGTCATAGAAGATGTTTCCTTGTCATAT TAATCAAACATATTCATGACAAAATTGTAGGGATATACATAGCCAGTTCTGTTGCAGTTCTTTATCTTTGTGCGTGAGTG TCTGTGTTGTGTGTGTTTAGTAGGGTTTTATATAGCCCCTTTCCTCTTTTAGTTCTGTTAATGCAAATATGCCATTTCCA TGGGGAGCAGATACAGAAGCTAGATACTTCAGTTGGATTTTTATATGTATGAATCTAGTATCTTTCATATTGTAGGAACA CCTCTGTTAAATGCCATCAATTTTCCTTAAGTGTTTTCTGGTAACAAGATGCGCAATTAGTGTCTTTAAATATCAGTTAA GTGCGACGTGGATGAACTTTTATCCTGATTCATGAAAATAATTGTGCTCACTTTTATCTTGAATCATAATTAAAAGCGGG ATCATTTGCGTTTGTACTATGCTATTTTCCACAAGCATTTCTCGCTCC
CDS sequence (LotjaGi4g1v0228100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTTCAGCAGCTTCTGCAACTTCTTCTTCCTCCAAATTCCTCCACCCACACCCTTCTCCTTCTTCCTCTCACTC TCACTCCTCTTCCCCCTGCCTCTTCCTCAGACCCCAATTACCCACCACCCACCTCTCCTCCTCCTTCAATCCTTCCACAA TCCTCCTCAACGCGCCGCCGCAACAACCCTCCGCCCCCTTCCACCGCCGCTCCTCCTCCCTCACCGTCCGCGCCGCTCGC GGCAAGTTCGAGCGCAAGAAACCCCATGTCAACATCGGCACCATCGGCCACGTCGACCACGGCAAAACCACCCTCACCGC CGCCCTCACCATGGCCCTCGCTTCCCTCGGAAACAGCGCCCCCAAGAAATACGACGAAATCGACGCCGCCCCTGAAGAGC GCGCTCGCGGTATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAATCGCCACTATGCTCACGTTGACTGCCCC GGCCACGCTGATTACGTCAAGAACATGATTACCGGTGCCGCCCAGATGGACGGCGCTATTCTTGTTGTCTCCGGCGCCGA CGGCCCTATGCCGCAGACCAAAGAGCACATCCTCTTGGCGAAGCAGGTTGGTGTACCTAACATGGTGGTTTTCCTCAACA AGCAGGACCAGGTTGATGATGAGGAGCTTCTGCAACTCGTTGAATTGGAGGTTCGGGAGCTTCTATCGTCTTACGAGTTC CCTGGGGATGATGTTCCCATTGTTTCTGGTTCTGCCCTTTTGGCTCTTGAAGCTCTAATGGCGAACCCTGCTATCAAACG TGGTGAGAATCAGTGGGTGGATAAGATTTATGAGCTTATGGATAATGTGGATAGCTACATTCCTATCCCTCAGCGCCAAA CCGATCTTCCGTTTTTGTGTGCCATTGAAGATGTGTTTTCCATCACGGGTCGTGGAACCGTGGCCACCGGGCGTATTGAG AGGGGGTTGGTTAAGGTTGGTGACACGGTTGAGATTGTTGGTGTTAGGGAAACTAGGACCACTACTGTGACTGGGGTGGA GATGTTTCAGAAGATTCTGGATGATGCCATGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGGTTGATA TTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACTATTACACCACACACCAAGTTTTCTGCGATTGTGTACGTGTTGAAG AAGGAAGAAGGTGGGAGGCACTCGCCTTTCTTTGCTGGTTACAGGCCACAGTTCTACATGAGGACTACTGATGTCACTGG CAAAGTCACGGCCATTATGAATGATAAGGATGAGGAGTCCAAGATGGTGATGCCCGGAGACCGTGTTAAGATGGTGGTTG AGCTTATTGTTCCAGTGGCTTGTGAACAGGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTT ATCCAATCGATCATTGAGTGA
Protein sequence (LotjaGi4g1v0228100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAISAASATSSSSKFLHPHPSPSSSHSHSSSPCLFLRPQLPTTHLSSSFNPSTILLNAPPQQPSAPFHRRSSSLTVRAAR GKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCP GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF PGDDVPIVSGSALLALEALMANPAIKRGENQWVDKIYELMDNVDSYIPIPQRQTDLPFLCAIEDVFSITGRGTVATGRIE RGLVKVGDTVEIVGVRETRTTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLK KEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGV IQSIIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 51 | 486 | 436 | 7.4E-282 | – | |
| PANTHER | 51 | 486 | 436 | 7.4E-282 | – | |
| Hamap | 78 | 486 | 409 | 58.928 | ||
| Gene3D | 79 | 290 | 212 | 6.6E-68 | – | |
| TIGRFAM | 79 | 486 | 408 | 4.1E-226 | ||
| SUPERFAMILY | 85 | 313 | 229 | 8.11E-60 | ||
| ProSiteProfiles | 87 | 291 | 205 | 57.899 | ||
| Pfam | 87 | 288 | 202 | 8.5E-57 | ||
| CDD | 88 | 290 | 203 | 1.10456E-127 | ||
| TIGRFAM | 90 | 222 | 133 | 3.2E-15 | ||
| PRINTS | 91 | 104 | 14 | 2.0E-24 | ||
| ProSitePatterns | 128 | 143 | 16 | - | ||
| PRINTS | 135 | 143 | 9 | 2.0E-24 | ||
| PRINTS | 155 | 165 | 11 | 2.0E-24 | ||
| PRINTS | 171 | 182 | 12 | 2.0E-24 | ||
| PRINTS | 208 | 217 | 10 | 2.0E-24 | ||
| SUPERFAMILY | 292 | 388 | 97 | 4.91E-30 | ||
| Gene3D | 293 | 387 | 95 | 1.1E-35 | – | |
| CDD | 298 | 384 | 87 | 3.733E-41 | ||
| Pfam | 312 | 380 | 69 | 1.3E-17 | ||
| SUPERFAMILY | 385 | 485 | 101 | 4.56E-33 | ||
| Pfam | 385 | 484 | 100 | 8.8E-34 | ||
| CDD | 387 | 481 | 95 | 1.14145E-55 | – | |
| Gene3D | 388 | 485 | 98 | 2.6E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
Expression pattern of LotjaGi4g1v0228100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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