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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0284300 |
| Transcript ID | LotjaGi4g1v0284300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Receptor protein kinase, putative; TAIR: AT4G23200.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 12; Swiss-Prot: sp|O65472|CRK12_ARATH Putative cysteine-rich receptor-like protein kinase 12; TrEMBL-Plants: tr|A0A072US50|A0A072US50_MEDTR Cysteine-rich RLK (Receptor-like kinase) protein; Found in the gene: LotjaGi4g1v0284300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65649702..65654364) extracted from Lotus japonicus Gifu genome v1.2.
GTACCAAGAATAAGAAGCCATTTGGCTTCTAATTTCCAACTTAAGTGGAAGATTACATAGTTTTGGCAACACTTAATTTT AGTCTCAAAAGCTTAAGACCACAGTTCACATTCTTACAATGGTTTCAGAACTAGTTGTTCTCTTCCTTCTCTTCCTCCCT CTCAAATCTCAATCTTCTGCAGACACCCCTTCATGGGTGAAAGCTGGTTACTACTATTCAGGAAGTGAAATTTCAGCATC AGACATAAAAGCCACGCTTTTCACTCACCTCTTATGCTCTTTCGCTTTCATAAACCCCACCACCTACAACGTCTTCATCA ACTCTTCAGAGGAGCACAAGTTCTCAACCTTCACCAACACGGTCAAGCTTCAAAACCCATCAGTTTCAACGCTTCTATCA ATCTGGGGTGGCGGCGAAAACACCGCAATCTTCACCTCAATGCTAAATCAATCATCTTTTCGAAAATCCTTCATTGATTC CTCAATCAGAACAGCTAGGGGTTTGGAGTTTCGGGGTATAGACCTTTGCGGCGCGTGGCCGAAGCAGGGTAGTGACCTTA TCAATTTCGGAACCCTTTTGAAGGAGTGGCGAATTGCAATAGCTTCTGAGGCAAGAAACTCTAGCAAGCCAGAGTTGGTG TTGGTGATGGCAGGTTATTACCTAAAAGGTTCAGAATCTATGAGTTATCCATTTGAATCAATGCAGGTAAACTTGGATTG GGTGCATTTTCTGGCTTATGATTACTATGTTCCTAGAAAGCACAATGTAACCGGTTTTCATGCGGCTTTGTATGGTCCAA TTGGTTGGGATAACACTGATTCTGGTATCAAAGAGTGGAGGAAAAGGGGATTTTTGTCTAAGAAACTGGTAATTGGATTG CCTTTTCATGGATATGCATGGACACTTGTGAACCCTAGAGGTAATGGTGTGGGAACACTAGCTTCAGGACCTGCTATTAC AATGGATGGTTCCATGGCTTATAAACTGATAAAGAGTTATATTAGAAGCTTTGGAGGTGGAGTTGTTTCACATTATAATT CTACTTTTGTGGTGAATCACTTCACAGTTGCATCCACCACTTGGGTTAATTTTGATGATGTGGAGGCAATCAGGGCAAAA GTTTCTTATGCAAAGGAAAATGGTCTACTTGGTTACAATGTGTTCCAAGTTGGAAATGATGAAAATTGGGCCCTCTCAAA GGCAGGTGAGTTACAAAATTTAAGTGCTGTTTGGATTAGTGTTGTCATTATTGGTTATGGTAAAATTGATTGTAGTAAAA GTGAGTTGAAAGTGAAATGATATATGTTTGGAAACATTTATGAAAAGGGTGATTTTTGTAGGGTAATGTTGTAAAATTGC ACAATTGGTTATGTTCAACGCATAAGCTGCTCTCTCTAGCTTCTAGCAAAATTAAATTTGTGACTGAAATCAATTCTTCA AAATGACTCTCAAACATCTATATTGTCATCCAAGATTGACTTTACTTTATCATAATTGATTCGGAGGTTCCCCAACAGAG AACCAAACACACACTAAAGCAACCTTACCATACTGATTAAGCAAGATATTCTTTGGAATTGGACTGAATCCATTCATTGG TTCTTTTCTGATTGAAACTTATGGCATGTTGACTGCTTCTGAAATGCTTGAGATCCTTCTCTTCCCTTGTTCCCTGGTCT AATTTTAGATGTTTGAGTATTAACTTTCATACTCTTGATACAAATCCTAGAAATAAATAGCAATTGGTTGAGGTGGGCAT CATGATTGTATTCAGGTATTTATTTGTGTGGCTATGGATAAATTGTTCTTCTTATTTTCTGGAATAACATAAGCATCACC TCCTTTGCAACAGCTCAAGAAGTAGATGAAGATCATCATCATAAGAGGAAGTTGCTGATAATTGTTCTGCTTTCAACTCT GACAGTCGCATTTCTTTTGGGAATAGCATTTTGCTACTACCGCCGAGGTAAGGATGTAACCCCCTTGTCTTAGAGTGATA AAAATTGTGTTATACATGAAGTGATAGTCATATGTCTATTTTTCCTTGTAGTAGTTATCTTCCATGCTTATAGAAAAAAG ATATCTTCCATTGTTTTGGCAGGAATAGTAGCCAGTTTTACAAGATTAGTGTATAGACTGAGGATATATTTATCAGCAGC TGAAAAAGACCTCGATCAAAATGCTTCTGATCTGATAGTATTCAGTTATCTCACAATCAAATTGGCAACAGATAAATTTT CAAAAAATAATAAGCTTGGAGAGGGTGGATTTGGCTCTGTGTACAAGGTAACATTTCGAAAGTCATGTGTTAATGAAATG CTTCATGCAAAGAGAAACTATGAATTGAAGGCTAAAAACACTGCTTGCAATTTATATGACAAGGAGCCGAGGATAGTGAT ATGTGTTCTGGGCCAAAACTCCTTTAGCTGTATCATGTCTGGTACATTGTATAACATCCAGTAATTTTTTAACATTAAAA ACTAAATTACTTTAATGTCAATGCATGAAACAAAACCACAGTTTATGCAATTTTTAGCTACTAATGCCATTGATCCTGAT GAATATATTTTGCACGAAAAACATGTATTTATGTGGCACCTAATAATGCCAACCAAAAACTTATACTAGATTTAGGGACC GAGTTTGTACTTTGTACAATTGAACCAAAGGGATACCATAGCTCTTCACAATCAGAGCCTAGAACATCATGCTGGTATGT AAATTACAAAGTGAAGTCAAGTGATTCTTAGATGACAAAGTTATGATTTATTTTGTCAGGGGAAATTACAGAATGGACAG GAAATTGCTGTCAAAAGACTCTCAGAAACCTCCAATCAAGGCCTTGAAGAGTTCAGAAATGAGATCACGCTTACAGCAAG ACTGCAACATGTAAATTTAGTTAGGCTTCTCGGTTATTGCACAAAAAAGGATGAGATGATTCTGATCAATGAATACCTGC CAAATAAAAGCTTAGATAATTTCCTTTTTGGTCTGTCACTTTCCTTGCCTCTTTAAGTTTTCTTATGTGTATAGATATTT TTTTTATCTTATAGTTAACAAGAGATGTCTGATTCTTACGAGCATCTTAACTTGGTAGTGGTACTAGACTTGAACTTCAA ACAAGCAACCATTACAGAGTCCACTTTTTTTGTTTAGCCTTCATTTTGGTGACTAAATTTTAGAACTTAACTCAATGCAG ATCCAAGGAAATCAAATCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGGGTTATTCAAGGCCTACTTTATCTC CAGGAGTACTCAAATTTCACCATAATCCACAGAGATATTAAAGCTAGCAATGTTTTGTTAGATCATGAGATGAATCCCAA AATATCAGATTTTGGTATGGCTAGAATTTTCAGGAAATATGACATTGAAGCAAACACAAGCAGGATCGTGGGAACTTAGT GAGTAAATTAGCATTGATGACTTGTTATGGATGTTCCCTTCTTTTCTCTAATCACTTCATTGGCATTGTAGTGGGTACGT ACCTCCTGAGTATGTCAGAAAAGGCATATACTCAACAAAATACGATGTTTACAGTTTCGGTGTTCTTCTCTTGCAAATCA TAAGCGGAAAGAGGACTTCATGTTATTACGGCACGCACGAAAACATGAATCTTTTGGAATATGTAAATTTTTCAATACAT TTGTCTCTGACTATTTTATCTATTTTGTAACTTATTCCCAGTTTTATTGGTGATGAAATGACTAATGTAATAGTTTAATG TTTCAGGCGTATGAGCTATGGAGGGAAGGTAGAGGCGTGGAGTTTTTTGACCTGTCATTGGATGATACAACATCACTTTG TAAAATCATGAGATGCATGCAGGTGGCTCTGTTGTGTGTTCAAGATAATTCTGCAGATAGACCTTCCATGTTAGAAGTTG ATTCACTCCTTAAGAATGAAGCTGCATCTATTGGTACTCCCAAAACGCCTGGTTTCTCAGTGAAAAAACATGGAGAGGAG GAAGAAACATGTCACAGCGGGGCCAAATTTTCTTCCACCAATGATGTTACAATTTCTGAAATGGCACCAAGATAATATGG TACAGAACAGAACATTCTAGTACTTAATCATTACTGAATTCATTTTGGGTTGTCTTTGATTTCACTTTGCTCCCTTCACA GCTGGAGACTAAGCCATGGTACTCACCTTGAACTAGAGGATCTAAAGCTAACTGCTATTAATGGAGAGTGTGATATGATA TCTTGTTTAGGCCTTGTCTATTATTAGTTGAAGGGTCATCTATAGAAGTAGAGAAAATTTCAAGATCTCTTTCACTAACA TGCAAGATGGTGCTTTATGATCTGAAAATCATGTATACATATTTTCTGGCAACTGAGCAGGAACCATCGTTCTCTTCCGG AATGCAGTTGTTATATAATGTGAGTATGAGTATTATTATCTGGTAATATTAACATGAGAGTTTATTTCAGATTATCTTAT AAAGCAAATACTTGTGTACATGTTTGGTTAAGCTACTGAAATTAGCATATTACCAACCTATAAACTCTTTCAAGCATATT TGATTAAGCTTAACTGGATTAGTTTCTGAATCAAGACTTATACATACCTATTAACTCTTTTAAGCTTGTTTAAATGACGT TCTCAAACGAGTTTATGAATTAG
CDS sequence (LotjaGi4g1v0284300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCAGAACTAGTTGTTCTCTTCCTTCTCTTCCTCCCTCTCAAATCTCAATCTTCTGCAGACACCCCTTCATGGGT GAAAGCTGGTTACTACTATTCAGGAAGTGAAATTTCAGCATCAGACATAAAAGCCACGCTTTTCACTCACCTCTTATGCT CTTTCGCTTTCATAAACCCCACCACCTACAACGTCTTCATCAACTCTTCAGAGGAGCACAAGTTCTCAACCTTCACCAAC ACGGTCAAGCTTCAAAACCCATCAGTTTCAACGCTTCTATCAATCTGGGGTGGCGGCGAAAACACCGCAATCTTCACCTC AATGCTAAATCAATCATCTTTTCGAAAATCCTTCATTGATTCCTCAATCAGAACAGCTAGGGGTTTGGAGTTTCGGGGTA TAGACCTTTGCGGCGCGTGGCCGAAGCAGGGTAGTGACCTTATCAATTTCGGAACCCTTTTGAAGGAGTGGCGAATTGCA ATAGCTTCTGAGGCAAGAAACTCTAGCAAGCCAGAGTTGGTGTTGGTGATGGCAGGTTATTACCTAAAAGGTTCAGAATC TATGAGTTATCCATTTGAATCAATGCAGGTAAACTTGGATTGGGTGCATTTTCTGGCTTATGATTACTATGTTCCTAGAA AGCACAATGTAACCGGTTTTCATGCGGCTTTGTATGGTCCAATTGGTTGGGATAACACTGATTCTGGTATCAAAGAGTGG AGGAAAAGGGGATTTTTGTCTAAGAAACTGGTAATTGGATTGCCTTTTCATGGATATGCATGGACACTTGTGAACCCTAG AGGTAATGGTGTGGGAACACTAGCTTCAGGACCTGCTATTACAATGGATGGTTCCATGGCTTATAAACTGATAAAGAGTT ATATTAGAAGCTTTGGAGGTGGAGTTGTTTCACATTATAATTCTACTTTTGTGGTGAATCACTTCACAGTTGCATCCACC ACTTGGGTTAATTTTGATGATGTGGAGGCAATCAGGGCAAAAGTTTCTTATGCAAAGGAAAATGGTCTACTTGGTTACAA TGTGTTCCAAGTTGGAAATGATGAAAATTGGGCCCTCTCAAAGGCAGCTCAAGAAGTAGATGAAGATCATCATCATAAGA GGAAGTTGCTGATAATTGTTCTGCTTTCAACTCTGACAGTCGCATTTCTTTTGGGAATAGCATTTTGCTACTACCGCCGA GGAATAGTAGCCAGTTTTACAAGATTAGTGTATAGACTGAGGATATATTTATCAGCAGCTGAAAAAGACCTCGATCAAAA TGCTTCTGATCTGATAGTATTCAGTTATCTCACAATCAAATTGGCAACAGATAAATTTTCAAAAAATAATAAGCTTGGAG AGGGTGGATTTGGCTCTGTGTACAAGGGGAAATTACAGAATGGACAGGAAATTGCTGTCAAAAGACTCTCAGAAACCTCC AATCAAGGCCTTGAAGAGTTCAGAAATGAGATCACGCTTACAGCAAGACTGCAACATGTAAATTTAGTTAGGCTTCTCGG TTATTGCACAAAAAAGGATGAGATGATTCTGATCAATGAATACCTGCCAAATAAAAGCTTAGATAATTTCCTTTTTGATC CAAGGAAATCAAATCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGGGTTATTCAAGGCCTACTTTATCTCCAG GAGTACTCAAATTTCACCATAATCCACAGAGATATTAAAGCTAGCAATGTTTTGTTAGATCATGAGATGAATCCCAAAAT ATCAGATTTTGGTATGGCTAGAATTTTCAGGAAATATGACATTGAAGCAAACACAAGCAGGATCGTGGGAACTTATGGGT ACGTACCTCCTGAGTATGTCAGAAAAGGCATATACTCAACAAAATACGATGTTTACAGTTTCGGTGTTCTTCTCTTGCAA ATCATAAGCGGAAAGAGGACTTCATGTTATTACGGCACGCACGAAAACATGAATCTTTTGGAATATGCGTATGAGCTATG GAGGGAAGGTAGAGGCGTGGAGTTTTTTGACCTGTCATTGGATGATACAACATCACTTTGTAAAATCATGAGATGCATGC AGGTGGCTCTGTTGTGTGTTCAAGATAATTCTGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTCCTTAAGAATGAA GCTGCATCTATTGGTACTCCCAAAACGCCTGGTTTCTCAGTGAAAAAACATGGAGAGGAGGAAGAAACATGTCACAGCGG GGCCAAATTTTCTTCCACCAATGATGTTACAATTTCTGAAATGGCACCAAGATAA
Protein sequence (LotjaGi4g1v0284300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSELVVLFLLFLPLKSQSSADTPSWVKAGYYYSGSEISASDIKATLFTHLLCSFAFINPTTYNVFINSSEEHKFSTFTN TVKLQNPSVSTLLSIWGGGENTAIFTSMLNQSSFRKSFIDSSIRTARGLEFRGIDLCGAWPKQGSDLINFGTLLKEWRIA IASEARNSSKPELVLVMAGYYLKGSESMSYPFESMQVNLDWVHFLAYDYYVPRKHNVTGFHAALYGPIGWDNTDSGIKEW RKRGFLSKKLVIGLPFHGYAWTLVNPRGNGVGTLASGPAITMDGSMAYKLIKSYIRSFGGGVVSHYNSTFVVNHFTVAST TWVNFDDVEAIRAKVSYAKENGLLGYNVFQVGNDENWALSKAAQEVDEDHHHKRKLLIIVLLSTLTVAFLLGIAFCYYRR GIVASFTRLVYRLRIYLSAAEKDLDQNASDLIVFSYLTIKLATDKFSKNNKLGEGGFGSVYKGKLQNGQEIAVKRLSETS NQGLEEFRNEITLTARLQHVNLVRLLGYCTKKDEMILINEYLPNKSLDNFLFDPRKSNLLDWNKRVNIIEGVIQGLLYLQ EYSNFTIIHRDIKASNVLLDHEMNPKISDFGMARIFRKYDIEANTSRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQ IISGKRTSCYYGTHENMNLLEYAYELWREGRGVEFFDLSLDDTTSLCKIMRCMQVALLCVQDNSADRPSMLEVDSLLKNE AASIGTPKTPGFSVKKHGEEEETCHSGAKFSSTNDVTISEMAPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 533 | 533 | 1.8E-174 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 533 | 533 | 1.8E-174 | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| Phobius | 22 | 375 | 354 | - | – | |
| CDD | 24 | 360 | 337 | 1.06834E-115 | – | |
| SMART | 26 | 354 | 329 | 1.2E-65 | ||
| SUPERFAMILY | 29 | 355 | 327 | 3.4E-50 | ||
| Pfam | 31 | 354 | 324 | 3.0E-53 | ||
| Gene3D | 41 | 355 | 315 | 2.9E-80 | – | |
| Gene3D | 256 | 325 | 70 | 2.9E-80 | ||
| Phobius | 376 | 398 | 23 | - | – | |
| TMHMM | 376 | 398 | 23 | - | – | |
| Phobius | 399 | 764 | 366 | - | – | |
| Gene3D | 411 | 521 | 111 | 2.2E-34 | – | |
| SUPERFAMILY | 430 | 724 | 295 | 9.98E-77 | ||
| ProSiteProfiles | 446 | 717 | 272 | 37.488 | ||
| SMART | 446 | 722 | 277 | 6.9E-29 | ||
| Pfam | 447 | 649 | 203 | 7.1E-47 | ||
| ProSitePatterns | 452 | 474 | 23 | - | ||
| CDD | 452 | 719 | 268 | 7.80422E-89 | – | |
| Gene3D | 522 | 727 | 206 | 3.1E-52 | – | |
| ProSitePatterns | 567 | 579 | 13 | - | ||
| MobiDBLite | 743 | 764 | 22 | - | – | |
| MobiDBLite | 747 | 764 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. | ||
| Molecular function | Chitin binding | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. |
Expression pattern of LotjaGi4g1v0284300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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