Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0047100.1

Overview

Field Value
Gene ID LotjaGi5g1v0047100
Transcript ID LotjaGi5g1v0047100.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:7927249..7934026) extracted from Lotus japonicus Gifu genome v1.2.

CCGATTCAAATCCGTCAAGTAAAATAGTCCACACTCCACAGAGAAAGGTCAAAACCAAACAACAGTTTCGTTCGCCATTA CCACCTTTCCCTCCATTAACACAACACACTCTTCTTCTTCTTCTTCTTCTTCAAGCATGGACGGTGGTGCGTACAATCCT CGCACCGTCGAAGAGGTTTTCAGGGATTTCAAGGGTCGTAGAGCTGCACTCATCAAAGCCCTCACCACTGGTTCTTCTTT TTCCACTCTCATTCTTCCTTCCCACTTTTTTTTTTAATTTTTAATTTTTGTTTTTCATTCGTTTGTATGATTCTGCAGAT GTTGAGGAATTCTACCAGCAGTGTGATCCAGGTAACGTTTCATCAATTCGTCAAAATTCCTGTTTTTTTCGTTGTCGTCT ATGTTTTGTGTTTTTCGTGTTTTTTCCTTTTCTGTTGGGATAATTGAACCTGTTGCTGAAGTGGAAGTTGAATTTAGTTG CTGTTTGCTAGTGGGGTTTTCAATTTTCATTGGGAAATTCTGGGAAAATTCAAGCTTTTTTATTTCATGGGTTTTGAGTT TTGAGTGTTAGGCTGGTACTGTTTTTTTAAATGATGGCTAAAGTTTTTAGCTTTTCTTACCAGACAAAGGAAGCTATGTT TTATTTTCAACATAGAATTTCTGGGGTTGTGTTTTTGTTCCTTTTTAGTTTTTTTTAAGCTCCAATGTAGTGTGTATAGC AATGTGTTATACCATATATGTGCAGCATCTCAATTTGCAAAGCTTTTTTCATCTTCTATGTTCTCTTCTGTAAGCTTTTT GGTTTTGTTGTTTGGCTGGCTGTGAGTACTAATTTGTGCATTATTTGCCTCTAGTGGAGTTGTTTCTATGGTCTGGGCAA CTTGTGGTTTTTACCCTTGTTTTAGGGTTTTCCACGTTAAAAAAACTTGAGGTCTCTTGTGTGTTTGTGGAATATAGTTG CTGCCATATATTTGTTATTGCTTCTTGCTAGGGGTGAGCATTGATCGGATTCGGGCCCAAAAAATTGTACCGTTGCACGT CTCATAGAAATTTTCAATTCATAGAAATAATAATTTGACATTTACTTTTGTTGGCTCTGACCACGATAAAATATAAGCGA CAGGTGCACCTCTCCCCATATTTTAAATAACACTACTATGCGGTCGGGTTCGGATACCGCCGGTAATAAAATCTAAATCC GAACTAGACCGCCTCTATCTGTTTCAAATCACTTCTTTTCATTTGTGGACCCGGTCACCCGCCCATACTCGCCTGTTTCA CTTTTTCACTTTTCCGATATGTCGGGTTCGGGTCGAATGTGTTGCATGCTCACCCCTACTTCTTGCAAATTCTTGGTTGT TGGCGGGAATTTAATTCCGCTGCATATTCTTGTGTTTATTGTGCAATTGTATTTATGTGCTGCTGTCCCCAATCAGAAAC AAGAAGCTAAATTTCATCTGCAATCTAGATGCTCAACCCCTAGGAAGCGTGGCTATGACATGACACAGAATGAGTATATT GAAAATACTAAAAAATTATAGAACACAACATAAATAGAATACTATACATAGTAAAATTTGCCTGATGTGCCGCTGTATAT GATGTCTATTTTATTGTGCAAATTATTAAATGAAAACTTATGCAATTGGTCCTCAGAAAAAGTTCTCCTCTAAATTAGAG ACAAGATCAGTTTAGAGGGGCATTGTGGTTACCCCTTTGGATTCCTTGATTTTAGTTTTTGTCAGGGCTGTCAATAGCGT GCTATAGCACCGTAATGGTGCACAGCGGTCCTTGGCCGCTCCTAGGTGTTGTGTAGCCGTGCAGTTGAATGTTTCGACTG TTGCGACCGCTAAAGTGGAGGAAATAGCAGCCATAGCAGCGCTATTTGGCCGCTATTTGGTTGAATTGTTAAAAACCTAA AAGCAACCCACAAAAAGTGTTTCAGGGTTTTTACTTAAAAATATATTAAAAACGGTCTAGTTTGAGGTGGAAGTGATCTA GAACTTTAATGTTTTTAAGCAGTTTAATTTAGGAAATAGAGACTTAAACCTCTTGGTTACCTTGCCTTTTGTTGGTACTA GTATGTTTTGTCTAAGAGGACCTGTGACTTTTTAATGTTAATTATGAGTGCCATGATCTTTGAGATTTTTTATCATTTAT ATGCATATAGTTGTATTATATAAACTATACAAAAAATTCAGCATGGCGGCCATCCCGCAATGTCCTATACTGCAATAGCG TTTTCGTGGTTGGCCGCTACGTGCTGGTGCCGCTATTGGAGATTGACTACACTGGTTTCTGTACTCTTACAGCCCCATTG CTTAAGAGTGCTAAAATCTAAATGGAATAGGATTATTTTAAATTACGTCACATTTTCATGACATATCTAACCAAACTTTT CAGTATGTTCGACGAGGTCATTTCTTGCCATTATTATTTCCTCTTTTTGGTATTAATAAGTCTAATGTAGTATAGACTGT ATTAGGAACTAGCTCTATTGTAGTATGGGCTGTATTAGCAATATGCTACTATATCTGGGACCATACATTAATACACATTT CCTCTTGTTGAAATTAATACACATATATTAATATTCCAACTTTCCAAAGATACCATTTGCCATGGTAGACACAATATAAC CCACCTGTTCTATAACAAATTAACAATTGGAAACAAAATTAAAAGATTGCTGCATGGATTTTCACCTAGATTCTGGATTT AGTCTGAGGCTGCCTATTTTCTTGGAAACAAAAGCCATTTTCTTAGCTTTCGATTTTCTGTATTTCTGATGTATACCCAA TAGCCTAGTATGATTTTTATTTTATCGGGTTTTTTATTACTTGGGTGATGGATTTAAGCTGTTTACCCTTTGCTGCCTTA GTGTTATGATCCTAACTGCTGATTTTAGTTTTGTTTTCATGGCATTCAAAGTTCTTTCTATTATTGGTTTTTAAGGTTTA GATAACTTAGTCAATTATGTGAACTTTGTGATACAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGG GAAGTCAATCTGCCAGCTGAAGAAGTTCCCCCAGAGCTTCCTGAGCCAGCGTTGGGTATCAACTTTGCCAGAGACGGTAT GCAAGATAAGGACTGGCTGTCTTTGGTGGCGGTACACAGTGATGCTTGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTA GGTTTGGATTTGATAAGTCTGATAGGTATGTACTTTTCTTGACCCTTTTATAAAGATATTGTTTTACTCGGTTAAAGTTT TTTTTCCATCCATGTTTTTTATTGGTTGTAGCTTAGGCTTGGGTCAACTTTTCTGATTCCAGGACCTTGTTTTCACATTA TTTGTAAATTTTAAACTAAGGATGGTTCAAACATATCCATGGAACAAAGTTCTTTTCCTGCTTTGTTTGCACATAAATAT TGAATAAAACAGAAATGATTAGGCTCAAAAGATTGGCTTGCATTTTGTCAAGATCAAGATATTACATGGCGTTAGGAGAG GGATGGAAGATCGTTAATGAAAGGCGAAATCATACTCAAAACCAGTGTTGTCAATCCCGGATAGCGGCAGACCCAAAAAA CCCTATAGTGGTATAGCGCACAGCGGGATGGCCGCTACACTAAAGAAGGAGGAGGTTGGAGGATGCCGGAGAAGTTGTCA GAACCTTGCTAGTGCTCGTCAGAGGTCGCAATGTGACTAGAGCTCGTCGGAGGTCTTGTGGTGGCTGGGCTGGCAGCTGG GTTAGAACTCCAAGCTGAAATCTTGAGGAGGATGCATTAATGAAACGCATGAAAATGAAAATTGTTAATGCAAATCTCCG GCTGCAAGTTAGACACATGCACTAAATCCCGTGAAAATTGTTAATGCAAATCCTTCCACATATCTGCCGCTCTCCATCCA CACGTCATTCCTAGTTATAAAAGGATAAACTGAGTGAATTAACAATGAAAGGGTGTTGCACTGTTCCCAAATTGGATAGA TATGCTTTTGTATCGCGGGCTGCAATTGAACCATCAAAGAATTGCATTTATTCTTCGAAACTAATGCCATTTTCATGGAC CTAGCCCAAGAGTGGTAATTCTTATCATCTAAAGGAGGCAACACCATCACGGTTGCAGAATTTTCGCTTGGATGAAAGTA ATAAGGGCTTGATGGATTCTGTCATTCTGACATGGATTGTCACTAACCACACTTCGATAGCTGCCGGATTTGGACTTGGA ACTAGAGATCGAACCATGTTAGCAGCGATACCATCTGAGAGTTCAAAGGAGAATGCCATTTGAGAGAAAATGAAGGAGAT TAGATTCAATCTTTGATAGCTGCCGGATTTGGACTTGGAACTAGAGATCGAACCATGTTAGCAGTGATACCATCTGAGAG TTCAAAGGAGAATGACATTTGAGAGAAAATGAAGGAGATTAGATTCAATCTTCTGTTACAAGTCATGTATAAAGCAGTAG ACTAAGTGCAGCTAAGTATGCTACTCTTGGTAGTAGAGAACTTCTTCTTAACTAACTAATTCAGTAATTAGTTATATGGT TAGCTAATTAGTTACAAGGCAAGTTAAATAGCTAATCTTCCTGTAAATTTTTGTTCCCTTCTGTTGATAACTAACTGAAT GCTCTAGTACATTCAGTCTGCTGAATTGTATTCTGTTTCCCAATTATTTCTTTCCTTTTAGTCGGAAAGGATTTTTGTTC TATCTTGATACTCTTTATTGTCATATCGTACAGCTCAAATTTTATAAGCTTCGTTGAGGGGAATCTCTTGTTTTTTAGAA CAGACACATACTTATGTATGCGTGGCCTGAATTCAGTGTCTAGGCAGTCCAATACTGTTGTGTATTTACTAGATGGTGGT TCCCCCCTACCCCACAAGAAAATAAGTTTGTTAGTGGTGTTTCAGTTGCATTCTCTTGATTCATTGATGGTTTGATCCTC TCAAATTGGTATTTAATTGAAGTTGTAATCTTTCAGTAATATTTACTCATGTTCATGCAGGAAGCGACTATTTGGTATGA TAAATGATCTTCCCACAGTATTTGAGGTTGTTACCGGGGTGGCCAAGAAACAAGGAAAGGAATCTCATAGCAGTAACAAA CCCAAATCAAACTCTAAGGTATGCTACCTTGAAAATCAAACGAACCACTTGCCACTAATAGTTTGCTAGTTTCATACTTT CATTGCTTTACCAGTGAAACTAATAACATTTGCTTCTATATTTATGGTCACTCTTTTGTTCAATACAAGATTTGATGATA TATGCTGTATGTTTTACTTTTTTCTCACTGCAATCTGCATGTGTTCCAAACACGGTTTGATGGAGTTTTTTTCCTTCTCT GAAATGTCCATTTGCATTATGTGGAAACTGGAAAGATACAACAAATATACCGATAAACTTCAGGTGTTAGAAGGGTTTCA GGGAAAGGGGTATGAATTAAAAGTTTGGAGGGATTATCCTTTTTATGCTGAGGGCAAGCCTCCGCGCAACTGTATGGTTG CTACCATATGACTTTGCGGTCATAGGTTCCAGTCGTGGAATCAGCCTCTTGCAAATATGCTAGGCAAGGCAGCCTACATA AGATCCACAAAGTAGATCCGGCCCCTCCATGGACCTCGCTCTTATCGAGAGCTTTGTAGCACTGAGTTTGCTCTGTTTTT TATCCTTTTTATACTAGTGTAATATGTTGTTTTCTAGATGCTAACATTTGAACTGATGAAGTATTTTGAATTTGGTACCT TTGACAATCAATGGTTGAGATTTACAGAACATCATAATTTGTTATATAGGTTCAAGCTTATGATTACAATCACAACCGTT GATTTCTTAATCAGTGGCTGTGATGTCTTACTTTAGCTTCTAAAGTGTCTCCTTCACTTTAGAGGAGCCTAATCATTTGT AATGAGATCTGGTTCCTGATTGGTATTTAACCATTTATCATTGTTATCTCTTTTGGTTGACATCTGCAGCGAGGGTCTGA ACCTCAGGTGGTGAAGTATTCAAAAGGGTTGATATCGAAGGACGAGGACGAGGGCGAGGGCGAGGACGAGGACGAGGAAG GTTTAGAAGAGGAAGATGAAGAGGAACATGGAGAGACCTTGTGTGGGGCGTGTGGCGAGAGCTATGCAGCTGATGAGTTT TGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCAAGGGCTGAGCATATTAA ACAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGATCTTGACAATTGATAGTTTCTCTAGCAATCTGGGATTAGT AGCTATAATCTTGGCAATTTTATGACTGCTAATCTGTTTAGTAGGTCAAGTTTTTAGGTCTTGCTATCAAACGCAGGTTC ATTGTTCAGATATTAAGTTAGGTATGTGAGCTGCTACTGTGTTATCTAGAATTAGGATATTTATGTCATAACCGGACTTA AAATGATGTTCTGGTATGTGCTACCTTAGATTTGATGATGTCTTTAAATGTACTTGTGTCCATATTTTAGTGAACTTCTT ATTATCATCCCATTGTGCATTGTTTTCACTTTTCTTTCCTGATTCAAGTTCTAACATTTGTTATGGATGGGTGAAAAGTG AAAAGGAGAAGAATCTACCCGAGTTTGACTTGTTTAAAGTTATACTGACTTAAAATAGAAGGGGTTTCATACCATTTGCT TTGATTTGCCATGAATTTTTTTTTTATAATAAATTTGTTACTCAGTCTTTTATAGTTT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0047100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACGGTGGTGCGTACAATCCTCGCACCGTCGAAGAGGTTTTCAGGGATTTCAAGGGTCGTAGAGCTGCACTCATCAA AGCCCTCACCACTGATGTTGAGGAATTCTACCAGCAGTGTGATCCAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCTA GTGAGCAGTGGGAAGTCAATCTGCCAGCTGAAGAAGTTCCCCCAGAGCTTCCTGAGCCAGCGTTGGGTATCAACTTTGCC AGAGACGGTATGCAAGATAAGGACTGGCTGTCTTTGGTGGCGGTACACAGTGATGCTTGGTTACTTTCTGTGGCTTTTTA TTTTGGTGCTAGGTTTGGATTTGATAAGTCTGATAGGAAGCGACTATTTGGTATGATAAATGATCTTCCCACAGTATTTG AGGTTGTTACCGGGGTGGCCAAGAAACAAGGAAAGGAATCTCATAGCAGTAACAAACCCAAATCAAACTCTAAGCGAGGG TCTGAACCTCAGGTGGTGAAGTATTCAAAAGGGTTGATATCGAAGGACGAGGACGAGGGCGAGGGCGAGGACGAGGACGA GGAAGGTTTAGAAGAGGAAGATGAAGAGGAACATGGAGAGACCTTGTGTGGGGCGTGTGGCGAGAGCTATGCAGCTGATG AGTTTTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCAAGGGCTGAGCAT ATTAAACAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGATCTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0047100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDGGAYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFA RDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFGMINDLPTVFEVVTGVAKKQGKESHSSNKPKSNSKRG SEPQVVKYSKGLISKDEDEGEGEDEDEEGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEH IKQYKCPSCSNKRARS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 88 88 - –
PANTHER
PTHR12321:SF123
1 255 255 7.5E-146 –
PANTHER
PTHR12321
1 255 255 7.5E-146 –
Pfam
PF12165
10 137 128 1.4E-67
IPR021998
Phobius
TRANSMEMBRANE
89 110 22 - –
Phobius
CYTOPLASMIC_DOMAIN
111 256 146 - –
MobiDBLite
mobidb-lite
143 197 55 - –
MobiDBLite
mobidb-lite
178 197 20 - –
SUPERFAMILY
SSF57903
192 253 62 1.04E-17
IPR011011
Gene3D
G3DSA:3.30.40.10
195 256 62 1.1E-24
IPR013083
ProSiteProfiles
PS50016
200 252 53 9.57
IPR019787
SMART
SM00249
202 250 49 2.4E-9
IPR001965
CDD
cd15613
202 252 51 3.48265E-31 –
ProSitePatterns
PS01359
203 249 47 -
IPR019786
Pfam
PF00628
203 251 49 1.9E-10
IPR019787

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0042393
Molecular function Histone binding Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0047100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…