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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0234800 |
| Transcript ID | LotjaGi5g1v0234800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Flap endonuclease 1; TAIR: AT5G26680.2 5'-3' exonuclease family protein; Swiss-Prot: sp|C6TEX6|FEN1_SOYBN Flap endonuclease 1; TrEMBL-Plants: tr|I3SAA1|I3SAA1_LOTJA Flap endonuclease 1; Found in the gene: LotjaGi5g1v0234800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54290965..54296544) extracted from Lotus japonicus Gifu genome v1.2.
CCGACAACCAATCATAGTACGAAAACACCCTCACTGAGGAGAGTGCGCGGGAAGGAGTTGATTCTCTCTCTTTCGTTCAT TCTTCTTCTTCTTCTGCCGTCACCCAATCCATTTCCTCTGCAAATTCCTCTTCCTCTTCACAACAATGGGTATCAAGGTA TTCACTTTTTCCTCATCGCATCCCCTCTTTCGTTTCAATTTCATCGATTCTGTCATTATCACTGAGATTAATGCATTTTA ATTTCTAGGGTTTAACAAAGCTCTTAGCTGACAACGCCCCCAAATGCATGAAGGAGAACAAATTCGAGAGCTACTTCGGC CGCAAAATCGCCATCGACGCCAGCATGAGCATTTACCAGTTCCTTGTAAGTACTACTACTACCACTACTCCCCAAAAACC CTAGTGTAGTTTCAACCATTGATTCAGTAAAGGTTATGATGCTAACTTCATGTTGTTATGTGTCTTTGATTCTGCCGTAG ATTGTTGTAGGACGAAGCGGAGCTGAAACACTAACTAACGAAGCCGGCGAAGTTACTAGGTATAGGGTAACAAGCTTAAT TCTAATTTGGTATGATAATATGGCTTAGTTTGTTGTGTGATGATGGAGTTGGTTGATTGTTTTGTATCTTACAGTCATTT GCAAGGGATGTTTACGCGGACGATTAGACTTTTAGAATCCGGGATGAAGCCAGTGTAATTTTTTCATCGAAAACACGATT TCGGTTTTCTATCACCTGTGTCAGTGCTGTTGTTGATGTTATTTTAATGCTTATATGCAGATATGTTTTTGATGGGAAGC CCCCGGATATGAAGAAACAAGAGCTTGCAAAACGGTATTTTGCGTGGATTTTCTGTTATTCATAGAGAGTGACATTTTTA TTTTTTCTTGGGGGTTTAGGGTGTTTTAAACTTCTAACGCAAAACTGTTACTAACTAAAAATTCCTTATAATGCTTTTTG CTTTGAAACTTTGTTGTAGTCTCTCGAAGAGAGCTGAGGCTACTGAGGATTTGTCAGAAGCCTTAAAGGTATATGTAGTT TGTTATTGACTTTCCTACATGGTTTCTTTTGTGCTTGTAATTTCTTGTTTCTTTTGTATTAAATCAAAACATTTATCCCT GGGCTACTTTTTCTTGTCATTTTAGGCTGACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGGGTC TTTGTTTCTTAGCCACGTTCATTTGAAAAGTATTGCATATTATGAGATAAAGCATGGTTTTTTATGCACGTTGTTGAGTC TGTATCTCTATATCTTACAGGTGACAAAGCAGCATAATGAAGACTGCAAAAAACTCTTAAGACTCATGGGAGTGCCGGTC GTAGAGGTGACAATATAGCATTATACTAAAGTATTTGTCATCTTATGTGTTTACCATGTGGTTAAGGCTTCATATTCCAC AGGCTCCCTCAGAAGCAGAGGCTCAATGTGCTGCTCTTTGCAAAGCTGGAATGGTAAGTTCATATCTACTGTTTTTCACC TTGTTTTGTGAGCAGGATTCTTGACAAATAGATTCCAAATATTGTTATTAATCCTTTATTAACAGTAAGAACCATAAATG TTGCCATAAATTTCTATTGTTTTTTTATACAACCCATTTATATTTCAGATATTTCTTCCTTTCCTATTTTCCAACTGGTA ATCCTAACTCATGACATGCCTTCATATCCATTTTTCATTTATTTAAAATAATTGGCGACGTTCCTTTAAGATAAGCCTTC AATAGAATTTATGTGGGATATTTCATATACTGTAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTGACGTTTGGA GCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCTGTGATGGAATTTGAAGTTGCGAAGGTCCT TAGAGCTTTCAACATACATGAACTTTTTAACATTTCATCTGCTTGTTGATATTTCTTTTTGTTTCAGATTTTGGAGGAGT TAAATCTGACCATGGACCAATTTATTGATTTGTGCATTCTTTCTGGGTGTGATTATTGTGATAACATTCGAGGTATTTTA GTCTCATTTATTCGTATGATGATGTGTCCAAGTTCAGTATTGTGGTCACTTTTTAATCTCTATATTCATATGTATAGAAC GTGAATGTAAATGATTAATGATGTGTCACAGGGATTGGGGGCCAAACAGCTTTGAAGCTCATCCGTCAACATGGTTCTAT CGAAAATATTCTGGAGAACATAAACAAAGAAAGGTTTTTCTTATTTTTCCAGTTTGAAAATTACCATTTCAGTGTATGTA ATTGAATACTTATAAATTACATGATGAAAGCCTGTGAAATGAAGTTTACTTGTTTCTCTCTGTTCTGTTTGCACTGCATT TCCAATCAGGCTCTGGCTTAGATATTTGAGCCCTTCTAAATTTAATGAGTATGAGTTTACTAATATGACAGTGTACCCCG ACTACTTGCTTTTTTAATTTGTTATATCATAGTCATATCGTGGCTAGAATTTGTTACTATATTAATATGTTAATGGAGCT AGTTAGTTATTGTATATCGTTAGTAATATCAGATTAATGCTGTCTTTTGTTAGTAGAGAAGCTTAGTGTAGTATACAAAC TCAATGACGATGCTCAATTATGAACGCAAGGTTCGGTTCACGATATTTACTAGTGAGCCGATCTGTCATCCTCAGTAACA CTTTTTTAAATTGGGTATGTTCTAAATAGTTATCGACTTAGAAGTACAATATTTATAGACTAATCTAATATCATCCTTAG TAACACTTCTTTAAATTGTGATATTTCCTACTCAAACCACAGTAGAAACAAAAAAATCGTATATTATCCTAATCTAACAT GACAGTATTTGGTATCCTATTGTATTTGTATCCTAATCTACCATAACAAAACAATATTCTTTATTATAACCATGCATCTT ATCCTAATCACCAGAGTTATAACAATAATCAATCATAACAAAACATATTTGAATATATCTTAACAATATAAGCGAGTACA ATGATTCAGGTACCAGATACCAGAGGATTGGCCATATCAGGAGGCTCGACGGCTTTTTAAGGAACCAATGGTCACAACTG GAGACGACGAACTAAATCTTAAGTGGTCAGCTCCAGATGAAGAAGTAAATAACTATTTTATTTGAGAACTTCAAATATCC TTTCAAAGGCACATGGACTTACATACTCTATACTGTGTTCTTTGGCAAGATAACTTGGGTGCATTATGTTGCTTTTCATA CAGGGATTAATAACATTTCTGGTTAATGAAAATGGGTTCAACAGTGACAGGGTGACAAAGGTAGGAAGCTAAATATAATT AATGTTGACAGTGAGCTTTCATAGCATCTTCACAAAATATTTTAGTTATGATCTCTATTATCAATGTTAGGCAATAGAAA AAATTAAAGCTGCAAAGAACAAGTCATCACAAGGCCGGTAAGGGACTCTTAACTCTTTGGACATGAGTGTTCTAAATTAA TTTTTCCTTTACCTACCTAACTCTTTTTTTTCCTTATATTCTGAAAACTACAGTTTGGAGTCATTCTTTAAGCCAGCTCC AAGTTCATCTGTACCTATCAAACGGAAGGTACGTACCCACTACGTCAATCATCTCCACTACTTAACATTCAGAATTATTT GAAGAAAGCCTGGCTAGCTGTTCGCCCAAACATTTATTGTCAGACTTCGGGCTGGCTTTGATTCAGTTTTTTTTCCCTAT TTAACTGCCCGAAACCAAGAAAATTATTGTCACCTTATGTCATATGAATGATGATGAAACTGTTCCATTCCATGAAAAGT CCCATTCACTTAAATTGTGTGAAAGAAAGTATTATGAGCATAAATTATTGAAGTCCAAGATAGCTGCACTATTCTTATAT TCAATACTGGAGATTTTTTTATCAGATTTCTTGAAAATGTGATGATGAACATTGATAGTTACAGAAATTAAACAATTGGG CGCCCTGATTTATGTACCTAACATCATCTTTAATTCTTTATCCTATCATTCCTTCACTTACCGAGTTACCGTAGATTTGT AGCTCTTCAACCCTCCCCAGTCCCACCCCCCCCCCCCCCCAATTCCCTTCTTTTTTAAAAGAAAAAGCAGCGATGATGGG ATGTTCTGCCTTCCACATCTGAATTTAAGTACTTGAAACATGAAGTTTTTTCCCATGTTTACCAGAAATCTATGCTAGCA TAATTTTGACTACACTTAATGACAGGAAAGCAAATGCATGCTTAGATCTTTCAAACCAGCAATTGAGCATAAGATGTTCT CTCTGCAACTTCCTAACTGGTCAAGGCCCATGGTTTTTGGCAAGTTGAGCTTACAATATAATCTGAGTTCCAATGTATCT GTGCCATTGTGTAGAGGTGTCCATATTGGTGCCTGAAGCTGAATACCCCTGGTGAACCTTCAAAGTCAATCTAATGCTTA TGCATAATTTATATTTTAGCAACTATCATTCCGTTGACTTAGTGGAATGATGAATTATAGCTTATTGGGATCTATTCTGA CGTTATAATAATTCTTTTACTAATTTTGCATTTTAAAATGTAAAAACTATGTCAAGCCTTCTTGCATTTCTCGAGCCATA CATTTTAAACCGATAGTGTATAACTCGTAACTTCGGTTGTTTGTGTCTTTGCTTTTAGTTCCTTTAGCATATAGGCGTCT GGATCTAGGTTAACAGCTTTTAAAGTTGCCCTTGATCTGCTTGAAATACCTGAATGAAGCACCATCCATTTGAAAATATC TGCTGATAGTTTAACTAAGCAAAAAAAAAAAAGATAATACATTAATGCCACAAATTGAAAGCACCATAGAACAAGAACAA GTTACTATTCTGGTTTGAAAGATTCATGCCTTGACATGCTCTCTTTTCTTTTTGATAGGAAACACCTGACAATAATGCTA AAGAGACCAATAAAAAAACTAAGGGCAGTGGTGGTAGGAAGAAGAAATAGTTGAATGTCGCTTAAATTGGAGGAGTCGTT TACATGTTGATCAGGTTAGTATTTTGGATCTCTTTTTTCTTTTCACTACCTTATGTGACTATCCCTTTTGCATGCATTTA GATCTCACTACTCGTTTTCTCTGTTTTTTTGCGTTAGCGTCAAGGAGGTTTTCTCTGGTTTTTTGCGTTAGTGTCAAGGA GGATCGGATCAGTTCGCAATACTAATGGGTAAGTCTGCCAAATTGTAAGATATTTATGTGAAGTAGATTTGTAATTTGAC TAATGTAAGCTTAGCATACACAATTTGAGATGCGCTGCTTCGTCTGGGATATTTGAATTAGTTTTTCTTTAAGGGCTGCA TTACTTTTTCTCCTCGTGATTATTTCAATATTCTGGGCCTTTTTCCATTGATATTTGCACGAACCCACTGAACTGTGGTT ACATGAGTGTTGGAAATTTGGAAATGAGTCCTCTCAATTGTACAGAAAATATCAAGTTTTAGTGCTAGACCCATGCAGCT CACAGTCACCCATCCATGTAAAGTGTTGGTCGTGAATCAAGAGCATTGGTCTTATACATA
CDS sequence (LotjaGi5g1v0234800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATCAAGGGTTTAACAAAGCTCTTAGCTGACAACGCCCCCAAATGCATGAAGGAGAACAAATTCGAGAGCTACTT CGGCCGCAAAATCGCCATCGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTTGTAGGACGAAGCGGAGCTGAAACAC TAACTAACGAAGCCGGCGAAGTTACTAGTCATTTGCAAGGGATGTTTACGCGGACGATTAGACTTTTAGAATCCGGGATG AAGCCAGTATATGTTTTTGATGGGAAGCCCCCGGATATGAAGAAACAAGAGCTTGCAAAACGTCTCTCGAAGAGAGCTGA GGCTACTGAGGATTTGTCAGAAGCCTTAAAGGCTGACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGG TGACAAAGCAGCATAATGAAGACTGCAAAAAACTCTTAAGACTCATGGGAGTGCCGGTCGTAGAGGCTCCCTCAGAAGCA GAGGCTCAATGTGCTGCTCTTTGCAAAGCTGGAATGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTGACGTTTGG AGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCTGTGATGGAATTTGAAGTTGCGAAGATTT TGGAGGAGTTAAATCTGACCATGGACCAATTTATTGATTTGTGCATTCTTTCTGGGTGTGATTATTGTGATAACATTCGA GGGATTGGGGGCCAAACAGCTTTGAAGCTCATCCGTCAACATGGTTCTATCGAAAATATTCTGGAGAACATAAACAAAGA AAGGTACCAGATACCAGAGGATTGGCCATATCAGGAGGCTCGACGGCTTTTTAAGGAACCAATGGTCACAACTGGAGACG ACGAACTAAATCTTAAGTGGTCAGCTCCAGATGAAGAAGGATTAATAACATTTCTGGTTAATGAAAATGGGTTCAACAGT GACAGGGTGACAAAGGCAATAGAAAAAATTAAAGCTGCAAAGAACAAGTCATCACAAGGCCGTTTGGAGTCATTCTTTAA GCCAGCTCCAAGTTCATCTGTACCTATCAAACGGAAGGAAACACCTGACAATAATGCTAAAGAGACCAATAAAAAAACTA AGGGCAGTGGTGGTAGGAAGAAGAAATAG
Protein sequence (LotjaGi5g1v0234800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIKGLTKLLADNAPKCMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGAETLTNEAGEVTSHLQGMFTRTIRLLESGM KPVYVFDGKPPDMKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEA EAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIR GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNS DRVTKAIEKIKAAKNKSSQGRLESFFKPAPSSSVPIKRKETPDNNAKETNKKTKGSGGRKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 108 | 108 | 2.0E-53 | ||
| Pfam | 1 | 108 | 108 | 8.2E-30 | ||
| Hamap | 1 | 347 | 347 | 149.346 | ||
| PANTHER | 1 | 345 | 345 | 2.6E-174 | ||
| PANTHER | 1 | 345 | 345 | 2.6E-174 | – | |
| SUPERFAMILY | 2 | 234 | 233 | 1.57E-71 | ||
| Gene3D | 2 | 360 | 359 | 1.7E-146 | – | |
| CDD | 4 | 332 | 329 | 5.70164E-128 | – | |
| PRINTS | 28 | 42 | 15 | 3.8E-42 | ||
| SMART | 29 | 301 | 273 | 9.5E-4 | ||
| PRINTS | 82 | 101 | 20 | 3.8E-42 | ||
| Coils | 99 | 119 | 21 | - | – | |
| PRINTS | 146 | 163 | 18 | 3.8E-42 | ||
| SMART | 147 | 219 | 73 | 2.1E-34 | ||
| Pfam | 147 | 234 | 88 | 8.3E-32 | ||
| ProSitePatterns | 150 | 164 | 15 | - | ||
| PRINTS | 167 | 187 | 21 | 3.8E-42 | ||
| SUPERFAMILY | 219 | 354 | 136 | 2.84E-40 | ||
| SMART | 221 | 254 | 34 | 6.5E-13 | ||
| CDD | 222 | 290 | 69 | 1.6778E-42 | – | |
| PRINTS | 224 | 239 | 16 | 3.8E-42 | ||
| MobiDBLite | 334 | 382 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | Hydrolase activity, acting on ester bonds | Catalysis of the hydrolysis of any ester bond. |
Expression pattern of LotjaGi5g1v0234800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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