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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0234800 |
| Transcript ID | LotjaGi5g1v0234800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Flap endonuclease 1; TAIR: AT5G26680.3 5'-3' exonuclease family protein; Swiss-Prot: sp|C6TEX6|FEN1_SOYBN Flap endonuclease 1; TrEMBL-Plants: tr|A0A072VM97|A0A072VM97_MEDTR Flap endonuclease 1; Found in the gene: LotjaGi5g1v0234800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54291033..54296495) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTCGTTCATTCTTCTTCTTCTTCTGCCGTCACCCAATCCATTTCCTCTGCAAATTCCTCTTCCTCTTCACAACAATG GGTATCAAGGTATTCACTTTTTCCTCATCGCATCCCCTCTTTCGTTTCAATTTCATCGATTCTGTCATTATCACTGAGAT TAATGCATTTTAATTTCTAGGGTTTAACAAAGCTCTTAGCTGACAACGCCCCCAAATGCATGAAGGAGAACAAATTCGAG AGCTACTTCGGCCGCAAAATCGCCATCGACGCCAGCATGAGCATTTACCAGTTCCTTGTAAGTACTACTACTACCACTAC TCCCCAAAAACCCTAGTGTAGTTTCAACCATTGATTCAGTAAAGGTTATGATGCTAACTTCATGTTGTTATGTGTCTTTG ATTCTGCCGTAGATTGTTGTAGGACGAAGCGGAGCTGAAACACTAACTAACGAAGCCGGCGAAGTTACTAGGTATAGGGT AACAAGCTTAATTCTAATTTGGTATGATAATATGGCTTAGTTTGTTGTGTGATGATGGAGTTGGTTGATTGTTTTGTATC TTACAGTCATTTGCAAGGGATGTTTACGCGGACGATTAGACTTTTAGAATCCGGGATGAAGCCAGTGTAATTTTTTCATC GAAAACACGATTTCGGTTTTCTATCACCTGTGTCAGTGCTGTTGTTGATGTTATTTTAATGCTTATATGCAGATATGTTT TTGATGGGAAGCCCCCGGATATGAAGAAACAAGAGCTTGCAAAACGGTATTTTGCGTGGATTTTCTGTTATTCATAGAGA GTGACATTTTTATTTTTTCTTGGGGGTTTAGGGTGTTTTAAACTTCTAACGCAAAACTGTTACTAACTAAAAATTCCTTA TAATGCTTTTTGCTTTGAAACTTTGTTGTAGTCTCTCGAAGAGAGCTGAGGCTACTGAGGATTTGTCAGAAGCCTTAAAG GTATATGTAGTTTGTTATTGACTTTCCTACATGGTTTCTTTTGTGCTTGTAATTTCTTGTTTCTTTTGTATTAAATCAAA ACATTTATCCCTGGGCTACTTTTTCTTGTCATTTTAGGCTGACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAG TGAAGGTGGGTCTTTGTTTCTTAGCCACGTTCATTTGAAAAGTATTGCATATTATGAGATAAAGCATGGTTTTTTATGCA CGTTGTTGAGTCTGTATCTCTATATCTTACAGGTGACAAAGCAGCATAATGAAGACTGCAAAAAACTCTTAAGACTCATG GGAGTGCCGGTCGTAGAGGTGACAATATAGCATTATACTAAAGTATTTGTCATCTTATGTGTTTACCATGTGGTTAAGGC TTCATATTCCACAGGCTCCCTCAGAAGCAGAGGCTCAATGTGCTGCTCTTTGCAAAGCTGGAATGGTAAGTTCATATCTA CTGTTTTTCACCTTGTTTTGTGAGCAGGATTCTTGACAAATAGATTCCAAATATTGTTATTAATCCTTTATTAACAGTAA GAACCATAAATGTTGCCATAAATTTCTATTGTTTTTTTATACAACCCATTTATATTTCAGATATTTCTTCCTTTCCTATT TTCCAACTGGTAATCCTAACTCATGACATGCCTTCATATCCATTTTTCATTTATTTAAAATAATTGGCGACGTTCCTTTA AGATAAGCCTTCAATAGAATTTATGTGGGATATTTCATATACTGTAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCC TTGACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCTGTGATGGAATTTGAAGT TGCGAAGGTCCTTAGAGCTTTCAACATACATGAACTTTTTAACATTTCATCTGCTTGTTGATATTTCTTTTTGTTTCAGA TTTTGGAGGAGTTAAATCTGACCATGGACCAATTTATTGATTTGTGCATTCTTTCTGGGTGTGATTATTGTGATAACATT CGAGGTATTTTAGTCTCATTTATTCGTATGATGATGTGTCCAAGTTCAGTATTGTGGTCACTTTTTAATCTCTATATTCA TATGTATAGAACGTGAATGTAAATGATTAATGATGTGTCACAGGGATTGGGGGCCAAACAGCTTTGAAGCTCATCCGTCA ACATGGTTCTATCGAAAATATTCTGGAGAACATAAACAAAGAAAGGTTTTTCTTATTTTTCCAGTTTGAAAATTACCATT TCAGTGTATGTAATTGAATACTTATAAATTACATGATGAAAGCCTGTGAAATGAAGTTTACTTGTTTCTCTCTGTTCTGT TTGCACTGCATTTCCAATCAGGCTCTGGCTTAGATATTTGAGCCCTTCTAAATTTAATGAGTATGAGTTTACTAATATGA CAGTGTACCCCGACTACTTGCTTTTTTAATTTGTTATATCATAGTCATATCGTGGCTAGAATTTGTTACTATATTAATAT GTTAATGGAGCTAGTTAGTTATTGTATATCGTTAGTAATATCAGATTAATGCTGTCTTTTGTTAGTAGAGAAGCTTAGTG TAGTATACAAACTCAATGACGATGCTCAATTATGAACGCAAGGTTCGGTTCACGATATTTACTAGTGAGCCGATCTGTCA TCCTCAGTAACACTTTTTTAAATTGGGTATGTTCTAAATAGTTATCGACTTAGAAGTACAATATTTATAGACTAATCTAA TATCATCCTTAGTAACACTTCTTTAAATTGTGATATTTCCTACTCAAACCACAGTAGAAACAAAAAAATCGTATATTATC CTAATCTAACATGACAGTATTTGGTATCCTATTGTATTTGTATCCTAATCTACCATAACAAAACAATATTCTTTATTATA ACCATGCATCTTATCCTAATCACCAGAGTTATAACAATAATCAATCATAACAAAACATATTTGAATATATCTTAACAATA TAAGCGAGTACAATGATTCAGGTACCAGATACCAGAGGATTGGCCATATCAGGAGGCTCGACGGCTTTTTAAGGAACCAA TGGTCACAACTGGAGACGACGAACTAAATCTTAAGTGGTCAGCTCCAGATGAAGAAGTAAATAACTATTTTATTTGAGAA CTTCAAATATCCTTTCAAAGGCACATGGACTTACATACTCTATACTGTGTTCTTTGGCAAGATAACTTGGGTGCATTATG TTGCTTTTCATACAGGGATTAATAACATTTCTGGTTAATGAAAATGGGTTCAACAGTGACAGGGTGACAAAGGTAGGAAG CTAAATATAATTAATGTTGACAGTGAGCTTTCATAGCATCTTCACAAAATATTTTAGTTATGATCTCTATTATCAATGTT AGGCAATAGAAAAAATTAAAGCTGCAAAGAACAAGTCATCACAAGGCCGGTAAGGGACTCTTAACTCTTTGGACATGAGT GTTCTAAATTAATTTTTCCTTTACCTACCTAACTCTTTTTTTTCCTTATATTCTGAAAACTACAGTTTGGAGTCATTCTT TAAGCCAGCTCCAAGTTCATCTGTACCTATCAAACGGAAGGTACGTACCCACTACGTCAATCATCTCCACTACTTAACAT TCAGAATTATTTGAAGAAAGCCTGGCTAGCTGTTCGCCCAAACATTTATTGTCAGACTTCGGGCTGGCTTTGATTCAGTT TTTTTTCCCTATTTAACTGCCCGAAACCAAGAAAATTATTGTCACCTTATGTCATATGAATGATGATGAAACTGTTCCAT TCCATGAAAAGTCCCATTCACTTAAATTGTGTGAAAGAAAGTATTATGAGCATAAATTATTGAAGTCCAAGATAGCTGCA CTATTCTTATATTCAATACTGGAGATTTTTTTATCAGATTTCTTGAAAATGTGATGATGAACATTGATAGTTACAGAAAT TAAACAATTGGGCGCCCTGATTTATGTACCTAACATCATCTTTAATTCTTTATCCTATCATTCCTTCACTTACCGAGTTA CCGTAGATTTGTAGCTCTTCAACCCTCCCCAGTCCCACCCCCCCCCCCCCCCAATTCCCTTCTTTTTTAAAAGAAAAAGC AGCGATGATGGGATGTTCTGCCTTCCACATCTGAATTTAAGTACTTGAAACATGAAGTTTTTTCCCATGTTTACCAGAAA TCTATGCTAGCATAATTTTGACTACACTTAATGACAGGAAAGCAAATGCATGCTTAGATCTTTCAAACCAGCAATTGAGC ATAAGATGTTCTCTCTGCAACTTCCTAACTGGTCAAGGCCCATGGTTTTTGGCAAGTTGAGCTTACAATATAATCTGAGT TCCAATGTATCTGTGCCATTGTGTAGAGGTGTCCATATTGGTGCCTGAAGCTGAATACCCCTGGTGAACCTTCAAAGTCA ATCTAATGCTTATGCATAATTTATATTTTAGCAACTATCATTCCGTTGACTTAGTGGAATGATGAATTATAGCTTATTGG GATCTATTCTGACGTTATAATAATTCTTTTACTAATTTTGCATTTTAAAATGTAAAAACTATGTCAAGCCTTCTTGCATT TCTCGAGCCATACATTTTAAACCGATAGTGTATAACTCGTAACTTCGGTTGTTTGTGTCTTTGCTTTTAGTTCCTTTAGC ATATAGGCGTCTGGATCTAGGTTAACAGCTTTTAAAGTTGCCCTTGATCTGCTTGAAATACCTGAATGAAGCACCATCCA TTTGAAAATATCTGCTGATAGTTTAACTAAGCAAAAAAAAAAAAGATAATACATTAATGCCACAAATTGAAAGCACCATA GAACAAGAACAAGTTACTATTCTGGTTTGAAAGATTCATGCCTTGACATGCTCTCTTTTCTTTTTGATAGGAAACACCTG ACAATAATGCTAAAGAGACCAATAAAAAAACTAAGGGCAGTGGTGGTAGGAAGAAGAAATAGTTGAATGTCGCTTAAATT GGAGGAGTCGTTTACATGTTGATCAGGTTAGTATTTTGGATCTCTTTTTTCTTTTCACTACCTTATGTGACTATCCCTTT TGCATGCATTTAGATCTCACTACTCGTTTTCTCTGTTTTTTTGCGTTAGCGTCAAGGAGGTTTTCTCTGGTTTTTTGCGT TAGTGTCAAGGAGGATCGGATCAGTTCGCAATACTAATGGGTAAGTCTGCCAAATTGTAAGATATTTATGTGAAGTAGAT TTGTAATTTGACTAATGTAAGCTTAGCATACACAATTTGAGATGCGCTGCTTCGTCTGGGATATTTGAATTAGTTTTTCT TTAAGGGCTGCATTACTTTTTCTCCTCGTGATTATTTCAATATTCTGGGCCTTTTTCCATTGATATTTGCACGAACCCAC TGAACTGTGGTTACATGAGTGTTGGAAATTTGGAAATGAGTCCTCTCAATTGTACAGAAAATATCAAGTTTTAGTGCTAG ACCCATGCAGCTCACAGTCACCC
CDS sequence (LotjaGi5g1v0234800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATCAAGGGTTTAACAAAGCTCTTAGCTGACAACGCCCCCAAATGCATGAAGGAGAACAAATTCGAGAGCTACTT CGGCCGCAAAATCGCCATCGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTTGTAGGACGAAGCGGAGCTGAAACAC TAACTAACGAAGCCGGCGAAGTTACTAGTCATTTGCAAGGGATGTTTACGCGGACGATTAGACTTTTAGAATCCGGGATG AAGCCAGTATATGTTTTTGATGGGAAGCCCCCGGATATGAAGAAACAAGAGCTTGCAAAACGTCTCTCGAAGAGAGCTGA GGCTACTGAGGATTTGTCAGAAGCCTTAAAGGCTGACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGG TGACAAAGCAGCATAATGAAGACTGCAAAAAACTCTTAAGACTCATGGGAGTGCCGGTCGTAGAGGCTCCCTCAGAAGCA GAGGCTCAATGTGCTGCTCTTTGCAAAGCTGGAATGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTGACGTTTGG AGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCTGTGATGGAATTTGAAGTTGCGAAGATTT TGGAGGAGTTAAATCTGACCATGGACCAATTTATTGATTTGTGCATTCTTTCTGGGTGTGATTATTGTGATAACATTCGA GGGATTGGGGGCCAAACAGCTTTGAAGCTCATCCGTCAACATGGTTCTATCGAAAATATTCTGGAGAACATAAACAAAGA AAGGTACCAGATACCAGAGGATTGGCCATATCAGGAGGCTCGACGGCTTTTTAAGGAACCAATGGTCACAACTGGAGACG ACGAACTAAATCTTAAGTGGTCAGCTCCAGATGAAGAAGGATTAATAACATTTCTGGTTAATGAAAATGGGTTCAACAGT GACAGGGTGACAAAGGCAATAGAAAAAATTAAAGCTGCAAAGAACAAGTCATCACAAGGCCGTTTGGAGTCATTCTTTAA GCCAGCTCCAAGTTCATCTGTACCTATCAAACGGAAGGAAAGCAAATGCATGCTTAGATCTTTCAAACCAGCAATTGAGC ATAAGATGTTCTCTCTGCAACTTCCTAACTGGTCAAGGCCCATGGTTTTTGGCAAGTTGAGCTTACAATATAATCTGAGT TCCAATGTATCTGTGCCATTGTGTAGAGGTGTCCATATTGGTGCCTGA
Protein sequence (LotjaGi5g1v0234800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIKGLTKLLADNAPKCMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGAETLTNEAGEVTSHLQGMFTRTIRLLESGM KPVYVFDGKPPDMKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEA EAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIR GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNS DRVTKAIEKIKAAKNKSSQGRLESFFKPAPSSSVPIKRKESKCMLRSFKPAIEHKMFSLQLPNWSRPMVFGKLSLQYNLS SNVSVPLCRGVHIGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 347 | 347 | 149.346 | ||
| PANTHER | 1 | 369 | 369 | 7.5E-177 | ||
| PANTHER | 1 | 369 | 369 | 7.5E-177 | – | |
| SMART | 1 | 108 | 108 | 2.0E-53 | ||
| Pfam | 1 | 108 | 108 | 9.6E-30 | ||
| SUPERFAMILY | 2 | 234 | 233 | 1.96E-71 | ||
| Gene3D | 2 | 360 | 359 | 2.2E-146 | – | |
| CDD | 4 | 332 | 329 | 1.78004E-129 | – | |
| PRINTS | 28 | 42 | 15 | 5.4E-42 | ||
| SMART | 29 | 301 | 273 | 9.5E-4 | ||
| PRINTS | 82 | 101 | 20 | 5.4E-42 | ||
| Coils | 99 | 119 | 21 | - | – | |
| PRINTS | 146 | 163 | 18 | 5.4E-42 | ||
| Pfam | 147 | 234 | 88 | 9.6E-32 | ||
| SMART | 147 | 219 | 73 | 2.1E-34 | ||
| ProSitePatterns | 150 | 164 | 15 | - | ||
| PRINTS | 167 | 187 | 21 | 5.4E-42 | ||
| SUPERFAMILY | 219 | 354 | 136 | 3.44E-40 | ||
| SMART | 221 | 254 | 34 | 6.5E-13 | ||
| CDD | 222 | 290 | 69 | 1.43151E-42 | – | |
| PRINTS | 224 | 239 | 16 | 5.4E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | Hydrolase activity, acting on ester bonds | Catalysis of the hydrolysis of any ester bond. |
Expression pattern of LotjaGi5g1v0234800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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