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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0336600 |
| Transcript ID | LotjaGi5g1v0336600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter ATP-binding protein; TAIR: AT1G10680.1 P-glycoprotein 10; Swiss-Prot: sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10; TrEMBL-Plants: tr|A0A0B2P6C0|A0A0B2P6C0_GLYSO ABC transporter B family member 2; Found in the gene: LotjaGi5g1v0336600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65391187..65393757) extracted from Lotus japonicus Gifu genome v1.2.
TCATATATTCATTTTCATTGCAGCATAACACACTCCGGAGAATTATCCCGTTCAACAAGCATTGGTGGTAGTTTTCGTTC AGATAAAGAATCTATTGGGCGTGTTTGTGCTGATGAAGCAGGAAGCGTTGGAAGGTCAAGGCATGTGTCCTTAACAAGGC TATACACCATGATTGGTCCTGACTGGTTTTATGGGGTTTCTGGAACCTTGGGTGCTTTTATTGCTGGAGCCTTAATGCCT CTATTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTACATGGACTGGGACACAACACGCCATGAAGTGAAGAAAAT TGTTTTCCTCTTCTGTGGTGCAGCAGTTTTAGCTGTCACTGCCTATGTCATTGAACATCTTTCTTTTGGAATCATGGGCG AGCGACTTACCCTTCGTGTCAGAGAAACTATGTTTTCTGGTAATTATGATCAACTCATTATCATGTCTAGATCAGCTTTT CTTTTCTCAAAACCAATTCTGAAACTTAGAAGCTACTTACAGAAGCTTCTCTCCATAATTGATTCTGGTTTTATAATCAA TTGTAGAAGGATTTCCATTTATGCACACTTATGTGCTTGTCTTCCTATATGAAATGTTTCCTTTTTAATCTTCCTATTGA ATTTGGATAGCACTCAAATGTCTAAGAAACCTCCACAATATTCTTAATAATGACCAATACTGTTGATGATTTCATCTTCA TCTTATGAACTTAGTTATGAAGGCATTATTTTCCTTTAAGTGTTCAACACATGTCCTATTGATTTTTAAGGAAGCTGAAA AGTAACATTATTATTATCATTGGTTAAAACTTTATGATCTCTCTTTTGGCTGCAGCTATTTTGAAGAATGAAATTGGCTG GTTTGATGATACAAACAACTCAAGTTCTATGCTTTCATCGCGTTTAGAGGCCGACGCAACTTTATTAAAAACTATAGTTG TTGATCGTTCCACGATTCTCTTACAGAATGTTGGTTTGGTTGTTACCTCCTTCATCATTGCCTTCATTTTAAACTGGAGG ATTACACTTGTTGTATTGACCACATACCCTTTGATCATTAGTGGTCACATCAGTGAGGTTATTACCTCTTGCTCCAAATT TTAACTTCAAGAAATTAGTACACTGGTTTGTGTGTTAATACCTTCCTACCAACATTTCAGAAACTTTTCATGCAAGGCTT TGGAGGCAACTTGAGCAAAGCATACCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAACATACGCACCGTGGCTG CATTTTGCTCTGAAGAAAAGGTCGTTGGACTTTATGCTAATGAGCTTGTTGAGCCTTCGAAACGTTCATTCAAAAGGGGC CAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTACAAGCTATT GCTTCATTTTTTGTTTACTATGTGAAAGGATAATTATGCCTCCCTTTATGCTGAGATTTATGTTCCTTTTGCAGGTATGG GTCTGTGTTGATGCAAAAGGAGCTTGCTAGCTTCGCATCAATTATCAAGTCATTTATGGTTTTAATTGTAACAGCACTGG CTATGGGGGAGACTTTGGCACTGGCACCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGAT AGAAAGACATTGATAGTGCATGATGTTGGAGAAGAACTAAAGACAGTGGAAGGAACAATTGAGCTTAAAAGAGTCCATTT CAGCTACCCTTCAAGACCAGATGTGTTTATTTTTAACGATTTCAATCTAACAGTGCCTTCAGGAAAGAGTATTGCCTTGG TGGGGCAAAGTGGCTCTGGTAAAAGCACAGTAATCTCCCTTATACTCCGATTTTATGATCCAACATCTGGGAAAGTGATG ATCGATGGTAAGATGGTGATGATCCAACATGTGCTTGTAATGTCATTGTGGCAGTCATCATAAGTGCAAGTTCTAACATT GATTCATCAAATTCTTACAGGAAAAGACATCAGGAAAATCAACTTGAAATCTCTGAGGAGACGCATTGGTCTTGTGCAAC AAGAACCTGCTCTTTTTGCAACAACAATTCATGAAAACATTCTCTATGGAAAGGAAGGAGCCTCTGATTCAGAAGTAATG GAAGCAGCAAAACTTGCCAATGCTCATAATTTCATCAGTGCTCTTCCAGAGGGCTACTCAACCAAAGTTGGTGAAAGAGG AGTTCAACTATCTGGTGGCCAGAAACAACGAGTAGCTATTGCCAGGGCTGTTTTAAAAAACCCTGAAATCTTGTTGCTGG ATGAAGCTACAAGTGCACTGGATGTAGAGTCAGAGCGTGTGGTGCAACAAGCTTTAGATAAATTGATGCAGAACAGAACA ACAGTTATGGTGGCACATAGGCTTTCCACAATAAGAAATGCAGATCAAATATCAGTTTTACAGGATGGGAAGATAATTGA GCAAGGCACACATTCAAGTCTTGTAGAGAACACAAATGGAGCATACTTCAAACTAGTCAGCCTTCAACAACAAGATATGC AAGAACAATAA
CDS sequence (LotjaGi5g1v0336600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGTCCTGACTGGTTTTATGGGGTTTCTGGAACCTTGGGTGCTTTTATTGCTGGAGCCTTAATGCCTCTATTTGC TCTTGGAATCTCTCATGCTCTTGTATCATATTACATGGACTGGGACACAACACGCCATGAAGTGAAGAAAATTGTTTTCC TCTTCTGTGGTGCAGCAGTTTTAGCTGTCACTGCCTATGTCATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTT ACCCTTCGTGTCAGAGAAACTATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAACAACTCAAG TTCTATGCTTTCATCGCGTTTAGAGGCCGACGCAACTTTATTAAAAACTATAGTTGTTGATCGTTCCACGATTCTCTTAC AGAATGTTGGTTTGGTTGTTACCTCCTTCATCATTGCCTTCATTTTAAACTGGAGGATTACACTTGTTGTATTGACCACA TACCCTTTGATCATTAGTGGTCACATCAGTGAGAAACTTTTCATGCAAGGCTTTGGAGGCAACTTGAGCAAAGCATACCT AAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAACATACGCACCGTGGCTGCATTTTGCTCTGAAGAAAAGGTCGTTG GACTTTATGCTAATGAGCTTGTTGAGCCTTCGAAACGTTCATTCAAAAGGGGCCAAATTGCTGGCATATTCTATGGCATT TCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGGTCTGTGTTGATGCAAAAGGAGCTTGCTAGCTT CGCATCAATTATCAAGTCATTTATGGTTTTAATTGTAACAGCACTGGCTATGGGGGAGACTTTGGCACTGGCACCAGACC TTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGACATTGATAGTGCATGATGTTGGAGAA GAACTAAAGACAGTGGAAGGAACAATTGAGCTTAAAAGAGTCCATTTCAGCTACCCTTCAAGACCAGATGTGTTTATTTT TAACGATTTCAATCTAACAGTGCCTTCAGGAAAGAGTATTGCCTTGGTGGGGCAAAGTGGCTCTGGTAAAAGCACAGTAA TCTCCCTTATACTCCGATTTTATGATCCAACATCTGGGAAAGTGATGATCGATGGAAAAGACATCAGGAAAATCAACTTG AAATCTCTGAGGAGACGCATTGGTCTTGTGCAACAAGAACCTGCTCTTTTTGCAACAACAATTCATGAAAACATTCTCTA TGGAAAGGAAGGAGCCTCTGATTCAGAAGTAATGGAAGCAGCAAAACTTGCCAATGCTCATAATTTCATCAGTGCTCTTC CAGAGGGCTACTCAACCAAAGTTGGTGAAAGAGGAGTTCAACTATCTGGTGGCCAGAAACAACGAGTAGCTATTGCCAGG GCTGTTTTAAAAAACCCTGAAATCTTGTTGCTGGATGAAGCTACAAGTGCACTGGATGTAGAGTCAGAGCGTGTGGTGCA ACAAGCTTTAGATAAATTGATGCAGAACAGAACAACAGTTATGGTGGCACATAGGCTTTCCACAATAAGAAATGCAGATC AAATATCAGTTTTACAGGATGGGAAGATAATTGAGCAAGGCACACATTCAAGTCTTGTAGAGAACACAAATGGAGCATAC TTCAAACTAGTCAGCCTTCAACAACAAGATATGCAAGAACAATAA
Protein sequence (LotjaGi5g1v0336600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGPDWFYGVSGTLGAFIAGALMPLFALGISHALVSYYMDWDTTRHEVKKIVFLFCGAAVLAVTAYVIEHLSFGIMGERL TLRVRETMFSAILKNEIGWFDDTNNSSSMLSSRLEADATLLKTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLTT YPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVVGLYANELVEPSKRSFKRGQIAGIFYGI SQFFIFSSYGLALWYGSVLMQKELASFASIIKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKTLIVHDVGE ELKTVEGTIELKRVHFSYPSRPDVFIFNDFNLTVPSGKSIALVGQSGSGKSTVISLILRFYDPTSGKVMIDGKDIRKINL KSLRRRIGLVQQEPALFATTIHENILYGKEGASDSEVMEAAKLANAHNFISALPEGYSTKVGERGVQLSGGQKQRVAIAR AVLKNPEILLLDEATSALDVESERVVQQALDKLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLVENTNGAY FKLVSLQQQDMQEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 570 | 570 | 0.0 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 570 | 570 | 0.0 | – | |
| Gene3D | 1 | 317 | 317 | 1.1E-80 | ||
| CDD | 1 | 314 | 314 | 2.1845E-106 | – | |
| SUPERFAMILY | 2 | 310 | 309 | 6.93E-44 | ||
| Phobius | 6 | 39 | 34 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| ProSiteProfiles | 12 | 296 | 285 | 37.912 | ||
| Pfam | 13 | 282 | 270 | 3.4E-46 | ||
| Phobius | 40 | 50 | 11 | - | – | |
| TMHMM | 51 | 73 | 23 | - | – | |
| Phobius | 51 | 68 | 18 | - | – | |
| Phobius | 69 | 130 | 62 | - | – | |
| Phobius | 131 | 151 | 21 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 152 | 234 | 83 | - | – | |
| TMHMM | 233 | 255 | 23 | - | – | |
| Phobius | 235 | 255 | 21 | - | – | |
| Phobius | 256 | 266 | 11 | - | – | |
| Phobius | 267 | 291 | 25 | - | – | |
| TMHMM | 268 | 290 | 23 | - | – | |
| Phobius | 292 | 574 | 283 | - | – | |
| Gene3D | 319 | 574 | 256 | 2.3E-100 | – | |
| SUPERFAMILY | 323 | 567 | 245 | 1.49E-93 | ||
| CDD | 329 | 567 | 239 | 2.05112E-150 | – | |
| ProSiteProfiles | 329 | 565 | 237 | 25.557 | ||
| Pfam | 348 | 496 | 149 | 7.7E-37 | ||
| SMART | 356 | 542 | 187 | 6.7E-17 | ||
| ProSitePatterns | 468 | 482 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0336600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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