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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0300500 |
| Transcript ID | LotjaGi6g1v0300500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A151U0N5|A0A151U0N5_CAJCA Elongation factor Tu; Found in the gene: LotjaGi6g1v0300500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61809726..61814131) extracted from Lotus japonicus Gifu genome v1.2.
GGTAGACACTCCGAACTATCAGTTGTTCAGTTCTACACTGATCTCTGTCTCACTCACTCTCTCTGTGTGTTGTTCATTTC TTCTTCCCACTCCATCGTTCACAATTCCATGGCTTCCGTTGCTTTCAGAAACCCAAATTCTAAGCACCTTCTACTCCCTT TCCGTTTCATATCTCAATACCATTCTTCACTCAGCCATGAAACTCACACCACATCCCAAAACAACTCCTTCTGCAGCAAT GCACCTCCATCTTCTCTTCGGAGATCCATGGCCACTTTCACTCGAACGTAAGACCCTCTTTGCTCCTTATACATATACGT GCATGCACATGAAGAAAGGTGTATAAGTATGTATAACAACAAGGTTTTAAATTGCGGTCGCAGCTGCATTGCGGACAAAT GCGGGTTGGTGCGGCCGCAGTCCGGATGTTGATGGGGGTGACTCTAAAATTCCTTTAAGTTGCAGCAGCAATTGCGGTTG TGGACCGCAATTTGAAACCATACATATTGGCTTAAGTTGGCCTAGATAACTAGTTTGAGCAGCTATTCTTCCTTCATGAT AAATAGTTTTTTGTTGAGTGTTCCTTTTGTTAAATTTTCCGTAAATGAACAGTTTGGATGCATTGGGTATGTGTAATTGT GTACTGGTAATGCAGATAGCAGATAGAGATATCTATAATTTATTGTTTGTCCTAGATTGAAAAAAGAGAATCTTTGAATG CAATTGACTCATGAGGGTTTCCTTTATTATTATTGTTCTCTTTTGCAGAAAGCCCCATCTTAATGTTGGCACCATTGGGC ATGTAGATCATGGAAAAACCACACTAACTGCTGCTATTACAAAGGTTTGGGTTGATTTCCTTGTCTTAATAGTTAATTCC ACCTTTTCGATTTCCTTGTGGCATGAAGTTTGTGTGATTCAGGTCTTGTGCTGGAAATAGTTATACAAGCGAATTGATTT TGTGGAACAGGTGCTAGCTGATGAAGGTAAAGCCAAAGCCATTGCCTTTGAGGAGATAGACAAGGCTCCTGAAGAGAAAA AGAGAGGAATTACTATTGCTACAGTAAGAGATAGTTCCTTTGCTTTATGGATTGTGCATCTCGTGAATGACACCGAGTTA AATGTTTCTAGGATGAAAATTTGGTAAACATCTCTTGAGCTTATCATAGGTCTTAATTATCTTCTTGATCTTGCAGGCTC ATGTGGAGTATGAGACAGCAAAGAGGCATTATGCCCATGTTGATTGTCCAGGACATGCTGACTATGTCAAGGTAAGCTTG ATGATGAGGCATAGTTAGAGACAGATTATGTGCATGTTTGGAAATGCTTCTACAATTGATTCTAAAACCAGAGTCAATTC TGGGGAGAAGCTTTTGTAAATAGTTTCTAGATTCTAGAATTGATTCTGAGGAAAGAGAAGTTGATCTAAACATGCATGTT TGAAATATCCCCTTGAACAGAAAGATTATTATTTTGTTTATAGGGTCCATAATGTGGTAAATTGTGAGTCTAGTCTTTTC TGAATAAACATATATTGCTTCACTCTCAAGATTGCATGGTCTTTTTTTGTGCATGATAAATTCATAATGCTCTTTCCCAT GTTCGTGTCTCCACTACTTTGACTCAATCTTCACTTAATTCATTTGGTGAAATTACAGAACATGATAACTGGAGCTGCAC AAATGGATGGTGGAATCCTTGTTGTTTCTGCTCCTGATGGGCCAATGCCTCAAACAAAAGAACACATACTGCTTGCTCGT CAGGTTGGTAGTTCATTTCGTTAAAATGTAAAAGTAAGTTGGTTTTTATAAAATCTAATTACATGCCAAATCCATAAGAC CAAAGCTTATAAGGTGTTTTCTTTGTTTTCCTGTGCCAGGTTGGTGTTCCATCACTGGTCTGCTTTCTAAACAAGATAGA TGCTGTTGATGACCCAGAGTTACTTGAACTTGTGGAAATGGAGCTTCGTGGTATGAAGACTTATCTTATACATATCGGAA TGTTTCTTTTGTATATTCTTTTTACTAAATGGTTTTGACAAACAACTTTTTTCGCAGAACTACTTAGTTTCTACAAATTT CCCGGAGATGAGATCCCAATTGTACGCGGTTCAGCCCTGTCTGCCTTGCAGGGGACCAATGAAGAACTTGGAAGGAAGGC TATCTTAAAACTAATGGATGCTGTGGATGGATACATTTCTGATCCTGTGCGGCAGCTTGATAAGCCTTTCCTAATGCCAA TAGAAGATGTTTTCTCCATTCAAGTAAGCAGAAATGTCATATGTACATCAGAATATTTCTTATTGGAGTATTAGCTCCTC TAAATTGAGGGAGTCACTTTAGAGAGTAAAATAGGTCATCACAATTCACAACCATTGATTGAGAGATTAAAAAAACAACA TAGTTTGTTATAGATATGCAAATTGAGATTTAAAGAACACCATAGTTTTTTATAGATATGCAAGTAGATGATCCCAATCT CAACATGAATATGATGACTTACTTTACCCAATAAAGTGATTTTCTCACTTTAGAGGAGTCAGATCCATAATATTCAATGC ATTGTCATGTTAAGTTCTATACTCATGTAATGACATTTTCATACTTACTCTACATATATGTTGTCAATTGCCTTTCCTTT CGCCATCATCTTTGGTTTATGTAAAGGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCGTCAAAGTTGGT GAGGAGGTTGAAATATTGGGACTGACACAGGTATTCATAGAAATTAAATGTACTATCGTGTTCATGTGTGTTTTTCTGTA TGTTATATGTTTAATGTTTTTATCTATCAATCTGTGTGTGCAGGGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAA TGTTTAAGAAAATTTTGGATCGGGGGGAAGTGAGTAAAACCATATATCCCTCTTCCTTTTTACCTCTGAATTGGATTCAT GGATAATTGGATATCTTAACTTGTGTTCATTTCTAGGCTGGTGATAATGTGGGACTTCTTCTACGAGGTCTGAAGCGTGA CGATGTACAAAGGGGAATGGTGAGTGAAGCTGATATAATGAGTAAAAGTAATTTTAACAGATAAAATATATGATTACCAC TATTCTAGAACTTCAAATTGAAGTGTAAATGTTGTCATTGTCTCACTCTTGATGTGAAAAGGTGAGTTCTTACTGAGTTT GTAATAAATATAGTCATAAAGCATTGCAAATAAGAAATATCTAGAGTAGAAGTAGGGATGATCATTTGAAACTTGAAAGT GTAGATTTTCAGGCAAAATAAGAAAGAAACAGGAGAAGTAACAGAAGAAAAACTGTAATCCACCATTTCATTTAGGCTTA TTTGGGTTATGAAAATTAACCAATATTTTTCCTTGATTGAAATATTTCTCGGTAAAATTTATAGGTTGTCTCCAAGCCTG GTGCACTGAAAGCGTATAAGAAGTTTGAAGCCGAGATTTATGTCCTCTCGAAAGATGAAGGTGGCCGTCATACTGCTTTT TTCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCAGATATTACAGGAACAGTGCAATTACCTGACAATGTTAAGAT GGTTATGCCTGGTGATAACGTGTCTGCAACTTTTGAGCTGATTTCACCTGTTCCTCTTGAAACAGGTATGTTGAATCCTA GATGTGGTGTAGATTCTATAGAAGATAGAGATGCTGATCTAATAGATAGTGCAAACATTATTTTTTGCATATCAATTTTA CTTTCTTTAGAATTAATTACTGAATAAACACTAAATTATCTCATCTTTCCATCAATCAAATCTTATTTGATGTCATGGTA AGAATAGAAACTCCTTCCTAAAACATAAGTATAGGACTATAGGAAATCAAGAAACCAAACCTACAACTTAGTTTTATTTA CTTCAATTTCATTTGTATAATTTTTTTCTGACTACATTCGACAATTTACTCTGACAACAATCCTTTAATTGAATAACAGG ACAAAGATTTGCTTTGAGAGAGGGAGGCAGGACAGTTGGTGCAGGAGTTGTCTCCAAAGTGATTTCCTAGGATGTTGATC TAGAGTCCACAACATTTTTTTTGGTCTAGTAGATTGTAATTAAGTTGTGAGTAAGGATTGAGAGCACCATCCTAGTACGA TTCTGTGATGTGACTGTTTTCGGCACTTCATGTGTTGGTTTCATTTGAATGTGTACTGTTTGGATATCCGTTGTGACCAC TACAAAAAGTGAACGAGATTCTTCAAATGGATTGGAATAAAAATCCGTCCACGTTGCACTCAAGTGGTATCCAGACACAC TTGATATTGGGAAAATGGTTATAATTTTTTGGTTTGGCTAATGATGCCAACTTCTTCCAAATTTCTCTCTCAACTTTCTT GTCTGG
CDS sequence (LotjaGi6g1v0300500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCGTTGCTTTCAGAAACCCAAATTCTAAGCACCTTCTACTCCCTTTCCGTTTCATATCTCAATACCATTCTTC ACTCAGCCATGAAACTCACACCACATCCCAAAACAACTCCTTCTGCAGCAATGCACCTCCATCTTCTCTTCGGAGATCCA TGGCCACTTTCACTCGAACAAAGCCCCATCTTAATGTTGGCACCATTGGGCATGTAGATCATGGAAAAACCACACTAACT GCTGCTATTACAAAGGTGCTAGCTGATGAAGGTAAAGCCAAAGCCATTGCCTTTGAGGAGATAGACAAGGCTCCTGAAGA GAAAAAGAGAGGAATTACTATTGCTACAGCTCATGTGGAGTATGAGACAGCAAAGAGGCATTATGCCCATGTTGATTGTC CAGGACATGCTGACTATGTCAAGAACATGATAACTGGAGCTGCACAAATGGATGGTGGAATCCTTGTTGTTTCTGCTCCT GATGGGCCAATGCCTCAAACAAAAGAACACATACTGCTTGCTCGTCAGGTTGGTGTTCCATCACTGGTCTGCTTTCTAAA CAAGATAGATGCTGTTGATGACCCAGAGTTACTTGAACTTGTGGAAATGGAGCTTCGTGAACTACTTAGTTTCTACAAAT TTCCCGGAGATGAGATCCCAATTGTACGCGGTTCAGCCCTGTCTGCCTTGCAGGGGACCAATGAAGAACTTGGAAGGAAG GCTATCTTAAAACTAATGGATGCTGTGGATGGATACATTTCTGATCCTGTGCGGCAGCTTGATAAGCCTTTCCTAATGCC AATAGAAGATGTTTTCTCCATTCAAGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCGTCAAAGTTGGTG AGGAGGTTGAAATATTGGGACTGACACAGGGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTTAAGAAAATT TTGGATCGGGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGAGGTCTGAAGCGTGACGATGTACAAAGGGGAATGGT TGTCTCCAAGCCTGGTGCACTGAAAGCGTATAAGAAGTTTGAAGCCGAGATTTATGTCCTCTCGAAAGATGAAGGTGGCC GTCATACTGCTTTTTTCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCAGATATTACAGGAACAGTGCAATTACCT GACAATGTTAAGATGGTTATGCCTGGTGATAACGTGTCTGCAACTTTTGAGCTGATTTCACCTGTTCCTCTTGAAACAGG ACAAAGATTTGCTTTGAGAGAGGGAGGCAGGACAGTTGGTGCAGGAGTTGTCTCCAAAGTGATTTCCTAG
Protein sequence (LotjaGi6g1v0300500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVAFRNPNSKHLLLPFRFISQYHSSLSHETHTTSQNNSFCSNAPPSSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLT AAITKVLADEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAP DGPMPQTKEHILLARQVGVPSLVCFLNKIDAVDDPELLELVEMELRELLSFYKFPGDEIPIVRGSALSALQGTNEELGRK AILKLMDAVDGYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTVKVGEEVEILGLTQGGPLKTTVTGVEMFKKI LDRGEAGDNVGLLLRGLKRDDVQRGMVVSKPGALKAYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADITGTVQLP DNVKMVMPGDNVSATFELISPVPLETGQRFALREGGRTVGAGVVSKVIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 49 | 449 | 401 | 7.1E-265 | – | |
| PANTHER | 49 | 449 | 401 | 7.1E-265 | – | |
| Hamap | 52 | 449 | 398 | 57.589 | ||
| TIGRFAM | 53 | 448 | 396 | 5.8E-219 | ||
| Gene3D | 53 | 256 | 204 | 2.9E-67 | – | |
| SUPERFAMILY | 59 | 279 | 221 | 3.2E-58 | ||
| ProSiteProfiles | 61 | 257 | 197 | 57.067 | ||
| Pfam | 61 | 253 | 193 | 7.7E-57 | ||
| CDD | 62 | 256 | 195 | 5.89553E-131 | ||
| PRINTS | 65 | 78 | 14 | 1.2E-22 | ||
| TIGRFAM | 65 | 200 | 136 | 5.3E-14 | ||
| ProSitePatterns | 102 | 117 | 16 | - | ||
| PRINTS | 109 | 117 | 9 | 1.2E-22 | ||
| PRINTS | 129 | 139 | 11 | 1.2E-22 | ||
| PRINTS | 145 | 156 | 12 | 1.2E-22 | ||
| PRINTS | 182 | 191 | 10 | 1.2E-22 | ||
| SUPERFAMILY | 258 | 354 | 97 | 1.49E-31 | ||
| Gene3D | 259 | 389 | 131 | 2.0E-52 | – | |
| CDD | 264 | 352 | 89 | 1.50464E-52 | ||
| Pfam | 278 | 348 | 71 | 6.4E-17 | ||
| Pfam | 355 | 447 | 93 | 2.2E-30 | ||
| CDD | 355 | 444 | 90 | 6.65296E-58 | – | |
| SUPERFAMILY | 358 | 449 | 92 | 1.09E-34 | ||
| Gene3D | 393 | 448 | 56 | 1.1E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
Expression pattern of LotjaGi6g1v0300500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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