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LotjaGi6g1v0310200.2

Overview

Field Value
Gene ID LotjaGi6g1v0310200
Transcript ID LotjaGi6g1v0310200.2
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Cullin; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:62898940..62906163) extracted from Lotus japonicus Gifu genome v1.2.

GTCCAAGCTGCAAACACAAGACAAGCACGATGGTGTGTTGATTCATTTTGATGAGTTTCTTACTCATTTCATGTCTCTCC CCACCAAACGTTCTGCTTCTGCTTCTTCTTCACCCACCACCGCCGCCGCCGCTCCTATGAAAAAGCAAAAGCCCCTTTCC TCCCACTCCGACTCCGACTCCGCCGCCGCCGCACTCATGCCCCTCGACGACGATCTCAAACCCTCCAACGCCGTTGGTCT CATGGCCGCCAATCTCGCCCGCAAGAAAGCTACCCCTCCTCAACCCCCCAAAAAACTCCTCATCAAGCTCCACAAAGGTA ATAAGGGTTTTTCAATTCTCCCTCATTTCGAGTTCCTTTTCCTCTTTTCAACGCTCTTCTCATTCCTCACCACTCCAATT GTGTTTATCCATCGCTAATTTCGTCATCGCTTTAAGCTTTCATGAGCTGGAAACTAACACTGCCTAACCCATTAGCTCAC TCATTCTGTACTAGCTCATCCAAATTAGTAATTGTAGGTTCAGCTATAGTTATACTATGTGATTTAATTTTCAATCTAGA TTCTGGGTCTTGTGATTATGTTTAATTTGCCTATATAAATTAACATGTGCTGTTGTGTGAGCTTGTAGTTTCTCTTATTT GCTCATACTTTCCTGTTTTTGTTTGGAAGCTAAACCAACATTGCCGACGAATTTCGAGGAGGATACATGGGCAAAGCTGA AGTCAGCTATTTGTGCAATATTTTTGAAGCAGCCGGACTCTTGTGACTTGGAGAAGCTTTATCAGGTGATCATGAATGAA AGTTTTCTAGTTATTGTTATTATTATTATTATTATTTTAAGGTGTTCGTTCATTAAACGCTGTGAATATTTATGGCATTG GCTTATTATTAGCTTTTAATGGTGAGCTCGTGATATTCATAGGCTGTGAGTGATCTCTGCCTTTATAAAATGGGTGGAAA TCTTTATCAACGGATTGAAAAGGAGTGTGAAGTGCACATATCTGCAGCGCTGCAGTCTTTGGTCGGACAAAGCCCCGATT TGGTTGTTTTTCTATCTCTAGTTGAGAGATGTTGGCAGGACCTTTGTGATCAAATGTTGATGATTCGTGGTATAGCCTTG TATCTGGACAGGACGTACGTGAAGCAAACAGCAAATGTTCGGTCATTATGGGACATGGGCTTACAACTTTTCCGTAAACA TCTTTCGTTGTCTCCTGAAGTGCAGCACAAAACTGTTACTGGTCTTCTAAGAATGATTGAAAGTGAAAGGTAAATCCATT TCCTTGCAATCTCAGTTCTATAAATGACTGATAGACCTTTGCATATATGCGAATCATATCAGATGTTAAATGCTGCCATA CACGTTTCAGAACTAAACACATTCGCCTTTCCTGTATATAGTTATATACCTTTTTGGTTAGACTGTAAGATATGTTGAAC TAAGATCGAATGATAAATTTTGAGACTTTTGCCTTTGTTAATGAGTAAAAATATTAATCAGTCAAGCTTTGTTTTTGGGA TGGCTATTCAAATCTGCATACAGTTCCAGGGTAGTGGCCATTTAATTTTTAGGTTAGAAAAATGACCTAGGGTGATCACT CTTTCTGCTTCTTATTCTCTAAAGCAAGGGATAATCTCTTGCACATGTAAGGTAGGATTGGAAGATTCTTATTTCTTATT GTTATGAATGAGTTTGTTCATAGTTCTGCTCTCCTTCTTTTTTATATGATTTCCCTGCTCCTCAACAATATAGTCTTTAG ATTGTCCACTAAATTATCGGTTGCCAGTTACCTACTTCTGTTGCTACCCGTCTTACCCTCACTGTCGCAACTCTCCTGTA AATCCTAAATTTGATATAAAAACCATTCATGTGTTTTGACCTAATAATTTAAGCTTTTTGGATATGGGTTCATGGCATAG TATCCAAGCCTCTCTGAGTCCAGCGTTCAGTCCTTGTTGCACCCATTCTTCTACATTAAAATTTAAATTTCCGCATAAGG TTGGGTGAACACGTGTGCATTGTTCATGCTTAGCGCTTCAGGCCCAAAGGCTCTCAAATGAGGGGATGTGTTAGATATAA AACCCATTATAGTTCAAGCTTTTCAGGTTGATGACATTATGAATAAGCTGTAAGGTTATCTTTATCATTTTGTAACTAAA AAATATCATTGCAACTTACTCCTTGCAATTATTTATTATGTATCTTTTTTACTATTATTTTCTTGGTTTGTAGCTCCAGA TTTTACCAGATCATTTTATTTTTGGTATTAGAAATATTGTGTAAGTTTGTCTGCCGATATTGGTTTATCACATGAGAAGA TTTATTGCTGACCAACAATTTTCTACTGATCTATGTGATCACTTCAGCTGAACATCTGATCAGAATGTGCTGGGAAAGTC AACTGTTATTTCGGATGTGGAATATACAAACACTGTGTTTTATTGACATCTGGCATCCATTGCATAATCTAAGGCATTAT TTTCTTATTGCGATTTTAATATTTGTTCAATTAGTTGTGGAATACAAGTGTTAGGAGAAGTGGTACTTGCAAAAAATTGC TGTACTTTATCAAACTTCGCGAGGTTAGTTTATTTCATAGTAATTAAACCTAGCCTGATCTGATTGAATATAAAGCTGGT GAATGTCAAGGACTGGTAGATGTTTAATTTTCAGAGAAGTCATACAATGCTAGAATATTAAGGAAGAGTTCGTTAGGAAA TACCATCTGATCTGCTACAAGCCTACAACTTAGGTAAATACAAAGGAGAAAACAAGGGATAAAAAAAACTGGAACATAAT TCTGATTTAAATCGGATTCCAATCTTATTCTTTTTCAATCTAATCTTTCCAACTTTCCTTACAATCTTCTACAAGATGCT TGTAGTTTTGCTGTTGTAAAATATAATGATATTGAAGCCATTGTTAGTAGTTGAGGTACAAAAGATAATTCAGCAAACTT TACTGGCTTGAGTAGTCTCATTATAAGGATGTATGCTAAGTAAGGGGCTAGGTTAGTATTTCCATTATATTTAAATGAAT TTGACCCAATAAAAGTCTATTTCAATGTTGACACCTTCAAGTCAGGAACTTAGATACTTCTTTTTCTCTCTTGATCATCA TTTGTGATTTTGGGCATTACATTTTCTCTCTTAATACAGAAAACGTAGCTGGTTGATCCACCTATTCCTATTTATACAAG GCCATCAAATTCTTCATCTAGTGTTGTACATTACAATTTTCACTCGTCTTGTTTTTCAGATTAGGTGAAGCTGTGGATAG AACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTAGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAAT GCACATCTGAATTTTATGCTGCGGAAGGTATGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAG GTGCTTACTTTTCATTATCCTCCCTGTATTATCTTGTTAGCTTTCATTAATTTAAGTATTTCTTAAATCAATGGATCTTG TCATGCCATTTCAGGATTTTATCGGACATTCTGACTTTAATTTGTCTTTTTTGGTATATTCAATCCTTCCCATGTCCAGC ATTGTATGCTTACTGTAGGGATATTTTTGGGTACTCATTTGTGCAGACTAGGTTGCAAGAGGAACATGATAGATGTTTGA TCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACAGCAGAAAAACAACTTCTTGAACGTCATATACCTGCCATT CTTGATAAGGTTCCGATCACCACCCACTTCTTGATTTTTCTGTCATGATTTCTTTTTTCATTTTGTTTCACATTGCTTCA AATTTACTTCGTGTTACAGGGTTTCTCTATGCTTATGGATGGGAATCGCATTGAAGACCTTCAGAGAATTTACTCACTCT TTTCAAGGGTCAATGCCCTTGAGTCACTGAGGCAGGCCATTAGTTCATACATCAGGAAAACTGGGCAGGGCGTTGTTATG GATGATGAGAAAGATAAAGATATGGTTTCTTCCCTTCTGGAATTTAAGGCTTCTCTTGACACGATATGGGAAGAAAGCTT TTTCAAGAATGAAGCTTTCTGTAACACCATTAAAGATGCATTTGAGCATCTTATCAATCTCCGGCAGGTACTTCCCATTT TGCTGTTGTCATTTCCATATTTTTGTTGGCTAGTTTCCATACTGAAATTTTTGAAATATCTCAAGATAGAAAGCTCCAGC CAATAAATTTTGGGTCAACTGACTGTTATCTTATTTTTTTCTGCATGGTAGAACCGACCTGCGGAGTTGATTGCCAAGTT TTTGGATGAGAAGCTTCGTGCGGGTAATAAGGGAACTTCAGAAGAGGAATTAGAGGGCACACTTGATAAAGTTCTGGTGT TATTCAGGTTCATTCAGGTAAGCTCAATATTTCATTGGTGGAGTAACTAACATCACACCATGTTTCCTGTATTTTTCATT CGTGCTCATGGTGATATTTCACTTTTCTAGATATATTTCTCTTCCATACTGATATTGTCAAGACTACTTGATGTTTTATT GTTAAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCTAAAAGACTGCTGCTAGGAAAGAGTGCTTCTAT TGACGCGGAGAAATCTATGATCTCCAAGGTTAGGGCTTATCTTTTACATTTAACTTTTGAAACAATTAGATGGTTCCTCA GCAGAATTTTATTAACAGATTTCTTTGATTACAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAA TGTTTAAGGTAATACATCTTTGAATCAATTTATAACTTGGAAGTTTTAAGGACTCTTTGATTGACTGGGTTGAAATCATC TATTCCAACCTCAGTTTTTTCCTATGTATTTTTCCTTGGCTTAGAAAGGTGACTATGAATTTGAACCTGGTGAGGAATTA TCTTTTATGATTTGATGATGAATTATCTTTGAATCCAGTTCTGTTTTAACAATGTTTTGACCAACTTCATGAATTACTAT AGCTTCTTACAACTTCGTCAAAAATTGTTCTGATTCAGGACATTGAATTATCAAAAGAAATAAATGAGTCCTTCAAACAG TCCTCCCAGGCGAGAACAAAACTTCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGGTAAGCTACGTGTTT CCCCTTTCTTATCTGTTTTCATCAATAATGTTTATGTGCTTCTTTTTTCCAGAGAATCTAATTGGAATAGTCGGATGATT GCAGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACCAGGTTCAGCACAAGCCA TGAATAAATGCTCTTTTTACTGTTGGTTTCCTTGATACTTATAACTTCTCTGACATGGTCCTTTCCTTTATTCCTTAAGG ATATTTTTAAAGAGTTCTATCTAAGCAAATACAGTGGAAGGCGTCTAATGTGGCAAAATTCGTTAGGTCACTGTGTCCTG AAGGCAGATTTTCCCAAAGGGAAAAAGGAGTTGGCTGTCTCCCTGTTTCAGGTTGGCCTTTCGAAAACCATTAATCCTTT TGTATCTTCATTTCCTGTCACTGTCTATCTTGTTTGAATTGAACACATTATTCTGGGATTAATTCTGCATGACTGGCTGT GCTCCAGACTGTTGTTCTGATGCTATTCAATGATGCCGAGAAACTTAGCTTTCAAGATATCAAGGACTCTACTAGTATTG AGGACAAGGAACTGAGAAGAACTCTGCAATCACTTGCCTGTGGAAAAGTTCGTGTTCTTCAAAAGGTGTGTTTGTAATCA TTTGCAGAATTATCAGTTTATAAAATTTGTTTGCAACTATGTAGTTTCTAATGTTGATTCTCTTTGTTGAATATGTAACA GACGCCAAAGGGTAGAGATGTGGAGGATGATGATTCATTTGATTTTAATGACGGGTTTACTGCTCCTCTTTACCGGATAA AGGTAGCAATATCCATCGCTTTGGACATTAGAGATCAGATTAACTGATCTCAATCTTTGATTTGTGTTTTAATTCCGAAT ACCATAGCCAGCCCTTTAGCAGTGATAAATGCTTGTGGTGGGTTAGTCCTCTAAATTTATGACCACAAGTTTAAACTAAT TTTGGTGTACATGGTGTAGGTGAATGCAATTCAGTTGAAGGAGACCGTGGAGGAAAATACAAGCACCACTGAGAGAGTTT TCCAAGACCGTCAATATCAGGTAAAATTTCTTTTCTCTAAAACCTTCCTTTTAGTTCAGACTTTAGAGGGACTAAATGTC CAGGGGAATGTAATGCACCTTCAATACAGAAGAACCTAATATGCTCGTGCATTATACTGGCTATTAGTTTTACCATTTTA CACTCGTTAGTTTTATTTTACAAAATATGACAAGTAATAAATTGTATCGATGTCCTTAAATTTTCAATATGAAACCATTT TCATGTGTCGTCATCTAACAACTTAAACTAGGGGGATAATTGGTTCATGATTTGGTGTCAAATTCTCTATACTAGGTTGT TTATTGGTTGATTGATCCTTGTTTCCCTATTCTTCTAATAAAAAAATTAAATTTCACCACAAGATAGGTGGGACTATACA TTGTCCACACTTTGAAGTCCAAGTGGCTCATGTGATGGGGGCATGTTAGAGATGTCAATACTGAATATAAAACCATTCAA ATATCTTCCACTAACAACTTATGATTTTGTGATAGTTTGTTCATGTTCATAACCTATTATCCTTGTTGGCGTGGTTTATT GCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCACACACTTCTTATTACTGAACTCTTCC AACAGGTGACATATTTACATCTTCCCTTTCTTTAATTCAAATGGAAACTGAATCCCGAAATTGTTCAATGTTAGTATTGT AGGCAAAGCTATTTTTCCAGTGTTACTGCTGATAAATTCTAACGTAACTTATGCTTGACTTGGTTGTGGACAAGTGAAAG CTTATTTAGACTGTTCTATATCTGATCATTAGGATAAATAGTGATTTGTCTTTTTTTTTTTCCTGAACAGCTCAAGTTCC CAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTGATTGACAGAGAGTACCTGGAGAGGGACAAGAACAACCCT CAAATATACAATTACCTGGCATAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0310200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGAGGTGCTTACTTTTCATTATCCTCCCTGATTTTATCGGACATTCTGACTTTAATTTGGATATTTTTGGGTACTC ATTTGTGCAGACTAGGTTGCAAGAGGAACATGATAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAG CAACAGCAGAAAAACAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTCTCTATGCTTATGGATGGGAAT CGCATTGAAGACCTTCAGAGAATTTACTCACTCTTTTCAAGGGTCAATGCCCTTGAGTCACTGAGGCAGGCCATTAGTTC ATACATCAGGAAAACTGGGCAGGGCGTTGTTATGGATGATGAGAAAGATAAAGATATGGTTTCTTCCCTTCTGGAATTTA AGGCTTCTCTTGACACGATATGGGAAGAAAGCTTTTTCAAGAATGAAGCTTTCTGTAACACCATTAAAGATGCATTTGAG CATCTTATCAATCTCCGGCAGAACCGACCTGCGGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCGGGTAATAA GGGAACTTCAGAAGAGGAATTAGAGGGCACACTTGATAAAGTTCTGGTGTTATTCAGGTTCATTCAGGGCAAGGATGTGT TTGAGGCATTTTATAAGAAAGATCTTGCTAAAAGACTGCTGCTAGGAAAGAGTGCTTCTATTGACGCGGAGAAATCTATG ATCTCCAAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGGACATTGAATTATCAAA AGAAATAAATGAGTCCTTCAAACAGTCCTCCCAGGCGAGAACAAAACTTCCATCAGGGATTGAAATGAGTGTTCATGTCT TGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACCAGGATATTTTT AAAGAGTTCTATCTAAGCAAATACAGTGGAAGGCGTCTAATGTGGCAAAATTCGTTAGGTCACTGTGTCCTGAAGGCAGA TTTTCCCAAAGGGAAAAAGGAGTTGGCTGTCTCCCTGTTTCAGACTGTTGTTCTGATGCTATTCAATGATGCCGAGAAAC TTAGCTTTCAAGATATCAAGGACTCTACTAGTATTGAGGACAAGGAACTGAGAAGAACTCTGCAATCACTTGCCTGTGGA AAAGTTCGTGTTCTTCAAAAGACGCCAAAGGGTAGAGATGTGGAGGATGATGATTCATTTGATTTTAATGACGGGTTTAC TGCTCCTCTTTACCGGATAAAGGTGAATGCAATTCAGTTGAAGGAGACCGTGGAGGAAAATACAAGCACCACTGAGAGAG TTTTCCAAGACCGTCAATATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCACACACTT CTTATTACTGAACTCTTCCAACAGCTCAAGTTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTGATTGA CAGAGAGTACCTGGAGAGGGACAAGAACAACCCTCAAATATACAATTACCTGGCATAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0310200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWRCLLFIILPDFIGHSDFNLDIFGYSFVQTRLQEEHDRCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFSMLMDGN RIEDLQRIYSLFSRVNALESLRQAISSYIRKTGQGVVMDDEKDKDMVSSLLEFKASLDTIWEESFFKNEAFCNTIKDAFE HLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSM ISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIF KEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRTLQSLACG KVRVLQKTPKGRDVEDDDSFDFNDGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTL LITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.20.1310.10
26 64 39 3.3E-7 –
SUPERFAMILY
SSF74788
28 165 138 1.33E-40
IPR016159
PANTHER
PTHR11932
28 525 498 2.0E-236 –
PANTHER
PTHR11932:SF66
28 525 498 2.0E-236
IPR033044
Pfam
PF00888
29 426 398 2.4E-154
IPR001373
Gene3D
G3DSA:1.20.1310.10
65 167 103 5.4E-34 –
SUPERFAMILY
SSF75632
166 436 271 2.49E-102
IPR036317
Gene3D
G3DSA:1.20.1310.10
168 280 113 1.5E-45 –
ProSiteProfiles
PS50069
169 398 230 59.406
IPR016158
SMART
SM00182
199 348 150 1.4E-75
IPR016158
Gene3D
G3DSA:1.10.10.2620
285 442 158 3.0E-55 –
SUPERFAMILY
SSF46785
437 525 89 4.54E-27
IPR036390
Gene3D
G3DSA:1.10.10.10
452 525 74 2.7E-33
IPR036388
SMART
SM00884
454 519 66 1.6E-34
IPR019559
Pfam
PF10557
457 517 61 2.2E-23
IPR019559
ProSitePatterns
PS01256
498 525 28 -
IPR016157

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0031461
Cellular component Cullin-RING ubiquitin ligase complex Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity.
Subterm of
GO:0031625
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0310200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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