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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0310200 |
| Transcript ID | LotjaGi6g1v0310200.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62899330..62906163) extracted from Lotus japonicus Gifu genome v1.2.
CACTCCAATTGTGTTTATCCATCGCTAATTTCGTCATCGCTTTAAGCTTTCATGAGCTGGAAACTAACACTGCCTAACCC ATTAGCTCACTCATTCTGTACTAGCTCATCCAAATTAGTAATTGTAGGTTCAGCTATAGTTATACTATGTGATTTAATTT TCAATCTAGATTCTGGGTCTTGTGATTATGTTTAATTTGCCTATATAAATTAACATGTGCTGTTGTGTGAGCTTGTAGTT TCTCTTATTTGCTCATACTTTCCTGTTTTTGTTTGGAAGCTAAACCAACATTGCCGACGAATTTCGAGGAGGATACATGG GCAAAGCTGAAGTCAGCTATTTGTGCAATATTTTTGAAGCAGCCGGACTCTTGTGACTTGGAGAAGCTTTATCAGGTGAT CATGAATGAAAGTTTTCTAGTTATTGTTATTATTATTATTATTATTTTAAGGTGTTCGTTCATTAAACGCTGTGAATATT TATGGCATTGGCTTATTATTAGCTTTTAATGGTGAGCTCGTGATATTCATAGGCTGTGAGTGATCTCTGCCTTTATAAAA TGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGTGCACATATCTGCAGCGCTGCAGTCTTTGGTCGGACAA AGCCCCGATTTGGTTGTTTTTCTATCTCTAGTTGAGAGATGTTGGCAGGACCTTTGTGATCAAATGTTGATGATTCGTGG TATAGCCTTGTATCTGGACAGGACGTACGTGAAGCAAACAGCAAATGTTCGGTCATTATGGGACATGGGCTTACAACTTT TCCGTAAACATCTTTCGTTGTCTCCTGAAGTGCAGCACAAAACTGTTACTGGTCTTCTAAGAATGATTGAAAGTGAAAGG TAAATCCATTTCCTTGCAATCTCAGTTCTATAAATGACTGATAGACCTTTGCATATATGCGAATCATATCAGATGTTAAA TGCTGCCATACACGTTTCAGAACTAAACACATTCGCCTTTCCTGTATATAGTTATATACCTTTTTGGTTAGACTGTAAGA TATGTTGAACTAAGATCGAATGATAAATTTTGAGACTTTTGCCTTTGTTAATGAGTAAAAATATTAATCAGTCAAGCTTT GTTTTTGGGATGGCTATTCAAATCTGCATACAGTTCCAGGGTAGTGGCCATTTAATTTTTAGGTTAGAAAAATGACCTAG GGTGATCACTCTTTCTGCTTCTTATTCTCTAAAGCAAGGGATAATCTCTTGCACATGTAAGGTAGGATTGGAAGATTCTT ATTTCTTATTGTTATGAATGAGTTTGTTCATAGTTCTGCTCTCCTTCTTTTTTATATGATTTCCCTGCTCCTCAACAATA TAGTCTTTAGATTGTCCACTAAATTATCGGTTGCCAGTTACCTACTTCTGTTGCTACCCGTCTTACCCTCACTGTCGCAA CTCTCCTGTAAATCCTAAATTTGATATAAAAACCATTCATGTGTTTTGACCTAATAATTTAAGCTTTTTGGATATGGGTT CATGGCATAGTATCCAAGCCTCTCTGAGTCCAGCGTTCAGTCCTTGTTGCACCCATTCTTCTACATTAAAATTTAAATTT CCGCATAAGGTTGGGTGAACACGTGTGCATTGTTCATGCTTAGCGCTTCAGGCCCAAAGGCTCTCAAATGAGGGGATGTG TTAGATATAAAACCCATTATAGTTCAAGCTTTTCAGGTTGATGACATTATGAATAAGCTGTAAGGTTATCTTTATCATTT TGTAACTAAAAAATATCATTGCAACTTACTCCTTGCAATTATTTATTATGTATCTTTTTTACTATTATTTTCTTGGTTTG TAGCTCCAGATTTTACCAGATCATTTTATTTTTGGTATTAGAAATATTGTGTAAGTTTGTCTGCCGATATTGGTTTATCA CATGAGAAGATTTATTGCTGACCAACAATTTTCTACTGATCTATGTGATCACTTCAGCTGAACATCTGATCAGAATGTGC TGGGAAAGTCAACTGTTATTTCGGATGTGGAATATACAAACACTGTGTTTTATTGACATCTGGCATCCATTGCATAATCT AAGGCATTATTTTCTTATTGCGATTTTAATATTTGTTCAATTAGTTGTGGAATACAAGTGTTAGGAGAAGTGGTACTTGC AAAAAATTGCTGTACTTTATCAAACTTCGCGAGGTTAGTTTATTTCATAGTAATTAAACCTAGCCTGATCTGATTGAATA TAAAGCTGGTGAATGTCAAGGACTGGTAGATGTTTAATTTTCAGAGAAGTCATACAATGCTAGAATATTAAGGAAGAGTT CGTTAGGAAATACCATCTGATCTGCTACAAGCCTACAACTTAGGTAAATACAAAGGAGAAAACAAGGGATAAAAAAAACT GGAACATAATTCTGATTTAAATCGGATTCCAATCTTATTCTTTTTCAATCTAATCTTTCCAACTTTCCTTACAATCTTCT ACAAGATGCTTGTAGTTTTGCTGTTGTAAAATATAATGATATTGAAGCCATTGTTAGTAGTTGAGGTACAAAAGATAATT CAGCAAACTTTACTGGCTTGAGTAGTCTCATTATAAGGATGTATGCTAAGTAAGGGGCTAGGTTAGTATTTCCATTATAT TTAAATGAATTTGACCCAATAAAAGTCTATTTCAATGTTGACACCTTCAAGTCAGGAACTTAGATACTTCTTTTTCTCTC TTGATCATCATTTGTGATTTTGGGCATTACATTTTCTCTCTTAATACAGAAAACGTAGCTGGTTGATCCACCTATTCCTA TTTATACAAGGCCATCAAATTCTTCATCTAGTGTTGTACATTACAATTTTCACTCGTCTTGTTTTTCAGATTAGGTGAAG CTGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTAGGAATTTATGCAGAAAGCTTTGAGAAGCCA TTCCTTGAATGCACATCTGAATTTTATGCTGCGGAAGGTATGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAA GCATGTGGAGGTGCTTACTTTTCATTATCCTCCCTGTATTATCTTGTTAGCTTTCATTAATTTAAGTATTTCTTAAATCA ATGGATCTTGTCATGCCATTTCAGGATTTTATCGGACATTCTGACTTTAATTTGTCTTTTTTGGTATATTCAATCCTTCC CATGTCCAGCATTGTATGCTTACTGTAGGGATATTTTTGGGTACTCATTTGTGCAGACTAGGTTGCAAGAGGAACATGAT AGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACAGCAGAAAAACAACTTCTTGAACGTCATAT ACCTGCCATTCTTGATAAGGTTCCGATCACCACCCACTTCTTGATTTTTCTGTCATGATTTCTTTTTTCATTTTGTTTCA CATTGCTTCAAATTTACTTCGTGTTACAGGGTTTCTCTATGCTTATGGATGGGAATCGCATTGAAGACCTTCAGAGAATT TACTCACTCTTTTCAAGGGTCAATGCCCTTGAGTCACTGAGGCAGGCCATTAGTTCATACATCAGGAAAACTGGGCAGGG CGTTGTTATGGATGATGAGAAAGATAAAGATATGGTTTCTTCCCTTCTGGAATTTAAGGCTTCTCTTGACACGATATGGG AAGAAAGCTTTTTCAAGAATGAAGCTTTCTGTAACACCATTAAAGATGCATTTGAGCATCTTATCAATCTCCGGCAGGTA CTTCCCATTTTGCTGTTGTCATTTCCATATTTTTGTTGGCTAGTTTCCATACTGAAATTTTTGAAATATCTCAAGATAGA AAGCTCCAGCCAATAAATTTTGGGTCAACTGACTGTTATCTTATTTTTTTCTGCATGGTAGAACCGACCTGCGGAGTTGA TTGCCAAGTTTTTGGATGAGAAGCTTCGTGCGGGTAATAAGGGAACTTCAGAAGAGGAATTAGAGGGCACACTTGATAAA GTTCTGGTGTTATTCAGGTTCATTCAGGTAAGCTCAATATTTCATTGGTGGAGTAACTAACATCACACCATGTTTCCTGT ATTTTTCATTCGTGCTCATGGTGATATTTCACTTTTCTAGATATATTTCTCTTCCATACTGATATTGTCAAGACTACTTG ATGTTTTATTGTTAAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCTAAAAGACTGCTGCTAGGAAAGA GTGCTTCTATTGACGCGGAGAAATCTATGATCTCCAAGGTTAGGGCTTATCTTTTACATTTAACTTTTGAAACAATTAGA TGGTTCCTCAGCAGAATTTTATTAACAGATTTCTTTGATTACAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAA CTGGAAGGAATGTTTAAGGTAATACATCTTTGAATCAATTTATAACTTGGAAGTTTTAAGGACTCTTTGATTGACTGGGT TGAAATCATCTATTCCAACCTCAGTTTTTTCCTATGTATTTTTCCTTGGCTTAGAAAGGTGACTATGAATTTGAACCTGG TGAGGAATTATCTTTTATGATTTGATGATGAATTATCTTTGAATCCAGTTCTGTTTTAACAATGTTTTGACCAACTTCAT GAATTACTATAGCTTCTTACAACTTCGTCAAAAATTGTTCTGATTCAGGACATTGAATTATCAAAAGAAATAAATGAGTC CTTCAAACAGTCCTCCCAGGCGAGAACAAAACTTCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGGTAAG CTACGTGTTTCCCCTTTCTTATCTGTTTTCATCAATAATGTTTATGTGCTTCTTTTTTCCAGAGAATCTAATTGGAATAG TCGGATGATTGCAGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACCAGGTTCA GCACAAGCCATGAATAAATGCTCTTTTTACTGTTGGTTTCCTTGATACTTATAACTTCTCTGACATGGTCCTTTCCTTTA TTCCTTAAGGATATTTTTAAAGAGTTCTATCTAAGCAAATACAGTGGAAGGCGTCTAATGTGGCAAAATTCGTTAGGTCA CTGTGTCCTGAAGGCAGATTTTCCCAAAGGGAAAAAGGAGTTGGCTGTCTCCCTGTTTCAGGTTGGCCTTTCGAAAACCA TTAATCCTTTTGTATCTTCATTTCCTGTCACTGTCTATCTTGTTTGAATTGAACACATTATTCTGGGATTAATTCTGCAT GACTGGCTGTGCTCCAGACTGTTGTTCTGATGCTATTCAATGATGCCGAGAAACTTAGCTTTCAAGATATCAAGGACTCT ACTAGTATTGAGGACAAGGAACTGAGAAGAACTCTGCAATCACTTGCCTGTGGAAAAGTTCGTGTTCTTCAAAAGGTGTG TTTGTAATCATTTGCAGAATTATCAGTTTATAAAATTTGTTTGCAACTATGTAGTTTCTAATGTTGATTCTCTTTGTTGA ATATGTAACAGACGCCAAAGGGTAGAGATGTGGAGGATGATGATTCATTTGATTTTAATGACGGGTTTACTGCTCCTCTT TACCGGATAAAGGTAGCAATATCCATCGCTTTGGACATTAGAGATCAGATTAACTGATCTCAATCTTTGATTTGTGTTTT AATTCCGAATACCATAGCCAGCCCTTTAGCAGTGATAAATGCTTGTGGTGGGTTAGTCCTCTAAATTTATGACCACAAGT TTAAACTAATTTTGGTGTACATGGTGTAGGTGAATGCAATTCAGTTGAAGGAGACCGTGGAGGAAAATACAAGCACCACT GAGAGAGTTTTCCAAGACCGTCAATATCAGGTAAAATTTCTTTTCTCTAAAACCTTCCTTTTAGTTCAGACTTTAGAGGG ACTAAATGTCCAGGGGAATGTAATGCACCTTCAATACAGAAGAACCTAATATGCTCGTGCATTATACTGGCTATTAGTTT TACCATTTTACACTCGTTAGTTTTATTTTACAAAATATGACAAGTAATAAATTGTATCGATGTCCTTAAATTTTCAATAT GAAACCATTTTCATGTGTCGTCATCTAACAACTTAAACTAGGGGGATAATTGGTTCATGATTTGGTGTCAAATTCTCTAT ACTAGGTTGTTTATTGGTTGATTGATCCTTGTTTCCCTATTCTTCTAATAAAAAAATTAAATTTCACCACAAGATAGGTG GGACTATACATTGTCCACACTTTGAAGTCCAAGTGGCTCATGTGATGGGGGCATGTTAGAGATGTCAATACTGAATATAA AACCATTCAAATATCTTCCACTAACAACTTATGATTTTGTGATAGTTTGTTCATGTTCATAACCTATTATCCTTGTTGGC GTGGTTTATTGCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCACACACTTCTTATTACT GAACTCTTCCAACAGGTGACATATTTACATCTTCCCTTTCTTTAATTCAAATGGAAACTGAATCCCGAAATTGTTCAATG TTAGTATTGTAGGCAAAGCTATTTTTCCAGTGTTACTGCTGATAAATTCTAACGTAACTTATGCTTGACTTGGTTGTGGA CAAGTGAAAGCTTATTTAGACTGTTCTATATCTGATCATTAGGATAAATAGTGATTTGTCTTTTTTTTTTTCCTGAACAG CTCAAGTTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTGATTGACAGAGAGTACCTGGAGAGGGACAA GAACAACCCTCAAATATACAATTACCTGGCATAG
CDS sequence (LotjaGi6g1v0310200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGTGCACATATCTGCAGCGCTGCAGTCTTTGGTCGGACA AAGCCCCGATTTGGTTGTTTTTCTATCTCTAGTTGAGAGATGTTGGCAGGACCTTTGTGATCAAATGTTGATGATTCGTG GTATAGCCTTGTATCTGGACAGGACGTACGTGAAGCAAACAGCAAATGTTCGGTCATTATGGGACATGGGCTTACAACTT TTCCGTAAACATCTTTCGTTGTCTCCTGAAGTGCAGCACAAAACTGTTACTGGTCTTCTAAGAATGATTGAAAGTGAAAG ATTAGGTGAAGCTGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTAGGAATTTATGCAGAAAGCT TTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCGGAAGGTATGAAATACATGCAGCAATCAGATGTTCCA GATTACTTGAAGCATGTGGAGACTAGGTTGCAAGAGGAACATGATAGATGTTTGATCTACTTGGATGCAAGTACTAGGAA GCCATTGATAGCAACAGCAGAAAAACAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTCTCTATGCTTA TGGATGGGAATCGCATTGAAGACCTTCAGAGAATTTACTCACTCTTTTCAAGGGTCAATGCCCTTGAGTCACTGAGGCAG GCCATTAGTTCATACATCAGGAAAACTGGGCAGGGCGTTGTTATGGATGATGAGAAAGATAAAGATATGGTTTCTTCCCT TCTGGAATTTAAGGCTTCTCTTGACACGATATGGGAAGAAAGCTTTTTCAAGAATGAAGCTTTCTGTAACACCATTAAAG ATGCATTTGAGCATCTTATCAATCTCCGGCAGAACCGACCTGCGGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGT GCGGGTAATAAGGGAACTTCAGAAGAGGAATTAGAGGGCACACTTGATAAAGTTCTGGTGTTATTCAGGTTCATTCAGGG CAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCTAAAAGACTGCTGCTAGGAAAGAGTGCTTCTATTGACGCGG AGAAATCTATGATCTCCAAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGGACATT GAATTATCAAAAGAAATAAATGAGTCCTTCAAACAGTCCTCCCAGGCGAGAACAAAACTTCCATCAGGGATTGAAATGAG TGTTCATGTCTTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACC AGGATATTTTTAAAGAGTTCTATCTAAGCAAATACAGTGGAAGGCGTCTAATGTGGCAAAATTCGTTAGGTCACTGTGTC CTGAAGGCAGATTTTCCCAAAGGGAAAAAGGAGTTGGCTGTCTCCCTGTTTCAGACTGTTGTTCTGATGCTATTCAATGA TGCCGAGAAACTTAGCTTTCAAGATATCAAGGACTCTACTAGTATTGAGGACAAGGAACTGAGAAGAACTCTGCAATCAC TTGCCTGTGGAAAAGTTCGTGTTCTTCAAAAGACGCCAAAGGGTAGAGATGTGGAGGATGATGATTCATTTGATTTTAAT GACGGGTTTACTGCTCCTCTTTACCGGATAAAGGTGAATGCAATTCAGTTGAAGGAGACCGTGGAGGAAAATACAAGCAC CACTGAGAGAGTTTTCCAAGACCGTCAATATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTA GTCACACACTTCTTATTACTGAACTCTTCCAACAGCTCAAGTTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAA AGCCTGATTGACAGAGAGTACCTGGAGAGGGACAAGAACAACCCTCAAATATACAATTACCTGGCATAG
Protein sequence (LotjaGi6g1v0310200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGNLYQRIEKECEVHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQL FRKHLSLSPEVQHKTVTGLLRMIESERLGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVP DYLKHVETRLQEEHDRCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFSMLMDGNRIEDLQRIYSLFSRVNALESLRQ AISSYIRKTGQGVVMDDEKDKDMVSSLLEFKASLDTIWEESFFKNEAFCNTIKDAFEHLINLRQNRPAELIAKFLDEKLR AGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDI ELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV LKADFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRTLQSLACGKVRVLQKTPKGRDVEDDDSFDFN DGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIE SLIDREYLERDKNNPQIYNYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 84 | 84 | 4.3E-22 | – | |
| SUPERFAMILY | 2 | 302 | 301 | 7.06E-96 | ||
| Pfam | 2 | 563 | 562 | 4.6E-199 | ||
| PANTHER | 3 | 662 | 660 | 4.4E-300 | – | |
| PANTHER | 3 | 662 | 660 | 4.4E-300 | ||
| Gene3D | 87 | 201 | 115 | 9.3E-40 | – | |
| Gene3D | 202 | 304 | 103 | 7.8E-34 | – | |
| SUPERFAMILY | 303 | 573 | 271 | 4.32E-102 | ||
| Gene3D | 305 | 417 | 113 | 2.1E-45 | – | |
| ProSiteProfiles | 306 | 535 | 230 | 59.406 | ||
| SMART | 336 | 485 | 150 | 1.4E-75 | ||
| Gene3D | 422 | 578 | 157 | 4.8E-55 | – | |
| SUPERFAMILY | 574 | 662 | 89 | 7.62E-27 | ||
| Gene3D | 589 | 662 | 74 | 3.7E-33 | ||
| SMART | 591 | 656 | 66 | 1.6E-34 | ||
| Pfam | 594 | 654 | 61 | 3.0E-23 | ||
| ProSitePatterns | 635 | 662 | 28 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Cellular component | Cullin-RING ubiquitin ligase complex | Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi6g1v0310200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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