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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0049200 |
Transcript ID | LotjaGi1g1v0049200.3 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6826247..6833780) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGTGTTATATATGTGCTATGCTTGTCCTGTAATTCCTCAATCTTATAAGTCTTACCATGACTGAACTCCTTTATTGA TCTTAAATGACAGGCAATTACTGCTTTAAAGAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGGAAGCCAAAGTTTT GCCCCTTTCGGCTATCCAATGTGAGTTTTTAACTTCTCTTGGGTAGATTTAAGTTTATCCACGTTAAAGTGTGTCTCAAT TTTGTTTTCCTGAAGATTTGTATTCGGCATTAAAAACTTTCAGAACCAAGCTTAGACTCAGTCTTTCTACTCTTTATTTT GTATGTTCTATAAATAATTGTGGAAGTATTTCTTCTAAATGCAGTAGGGGGAAGATAGAAGGGGTCCTTTAAGCTGAAAG ACAGGGTGAACTATTTGTGGAAGAGAGGAGCTGAAATGAAAAATATTCAGCTGATAAGTTAAACAGTGAAAAACATGATA TTCCAAAACTGTATGCTCTAAAATTAGAAATACAATGCTACAGAAAAATCTATCAATCAATGGCTTAACAGCAATTAGGT TACCTTGAGATTAGGTTTCCAAAAGCGTTTGCAGTAACTTCATTATGAAAATTTGATAAGATCACAGTGATTATGGTATT GTGCCTAACTGCTAAATGAGTTTCCGGCAACAATTTGAAGACTTGATTTTGTTTTTACCAAACCGGGTAGAGTGGGCAGC CTTGACTAGTCTAACTGATGAGACTGATTTGATCTGCAAGAACCCTTCGTGCCAATATTTATAAACGGAAAGCTATCTTT CAACACAAGAAGCTAAATCTTATAATGGCAAGCACTCAAATCCTCATAACTAGAATGTAAATTTGAATCTAAGCTTACAT GTTACCTTATTAAGCCCCACATCGTGTCAAACACTGCTGTATTTGGTGGTTATGCTTGCATTAATAGAATCTTCTGCATG ACATTTCATGGCTTGAAAGCCATATGATTATTTTGCTACTGCCATAACATTGCTTATCGTTTATTTTATAAATTTTCCAT AAATTATTTGTTTCTATTACATAAAGGATTGTTTTTAGATATTTTCCTGTTGCAAAGAATTTGAAGTATTTGATATTGCT ATTTTTTCAGGATGAATCTGTTTTGATATGGTTCTCTGGGAAAGAAGAGAAGCACCTTAAACTGAGTCATGTCTCTAGAA TTATATCTGGACAACGCACGGTAGATTTTTAAATTGATTGTGAAATCATTATACTGTTAACCTTTTCAGATTTAGCCAAC AGTGTGAGCCTTGTCAGCCTGGTTTCGATACGTAGTTGTTAAGTTCTATTTGATGTTTGTATGATTAACACAAATTGTGT TACTTCTCTGGTATGCAATCTTATGATCTCCATTTGCTCGAAGTCAAGATATATGAATGATATCTTTTATTACCACCTAC TAGTAAATAGTAATTGGCTTTATTTTTTACTTTATGTTGTATTATGAATATTTACTTGCTTGTTTATGGCAGCTATTGGG TTTTTGTTTTGCTTTAAGGAACATGCTGATGATTTTGTATTGTTTCAGTGTCCTATTCTAATAAGTTAATATTTATGTAA AAAGACCTTACTCATACATGAACTCAAGATTTTCTATTGAGCATGTGCATGAGTGTGTTTAATAATTTTAAATATATTGG TAGTTCCTTCTTGACTTTGGGCATCATCTGTTAATACATATCAAGTGATAAGGTGAGTATGATTAATAAAACATGGTCCC TATTCTTTTCAGCCTATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATACCAGTCGTTTTCTCTTATCTACAGTGATAG GTCACTGGACTTGGTATGGATTTCTTCATTTCTCTCTATTTTGGGATTTTTGGCTGTAGTTGGCCTATTGGTTTGCTTGT ACTATGTTCTTGGTATTGTGAACAGTGTATTTTGTCTGTAAAAGCTTTACACAATCTAGTGATCTGATTCTCTTCTACTA GATATGCAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCACGAAGCCATCATAGAAAAT GGAGAACAGACTCAAGAAGTGACGGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACAAGAAGAAGTTCTCCCTTA AATTCTCCATTTGGAAGTAATGAGAGCTTGCAAAAGGTAATACATATTATCCATGTCTTTCATATTTTCTTCCAATTTAC TCCATTGCGGTTGAATATGTTTATTTAGAGAATTTTCGTTTGTCCTTTTCAGGATAGTGGGGATCACCTTCGCCTCCATA GCCCATATGAGAGCCCCCCTAAAAATGGTTTGGACAAAGCATTAGATGTGGTCTTGTATGCTGTTCCTCAAAAGGGTTTC TTCCCTCCTGATTCAGCCAGTGCTTCAGTCCACTCTATATCATCCGGAGGATCAGATAGTATGCATGGTCACATGAGGAC GGTGGGTATGGATGCTTTCAGGGTTAGTCTGTCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTG ATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCATCGAGTTGGGAGT TCTTTGGGTGTAAAAATTGATTCTCTATTTCCTAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCTTG TGGCGGACGACATGCGGCCTTAGTGACCAAACAAGGTGAAATTTTCTCCTGGGGTGAGGAATCAGGAGGCAGGCTTGGGC ATGGTGTTGACTCTGATGTTCTCCAACCAAAGCTTATAGAAGCTCTAAGTAATACAAATATTGAACTTGTGGCTTGTGGG GAGTACCATACTTGTGCTGTGACCCTTTCTGGTGATCTTTATACATGGGGTAATGGCACATACAATTATGGTCTTCTGGG ACATGGAAATCAAGTCAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCAT GTGGACCATGGCACACTGCTGTTGTAACATCTTCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGT CATGGTGACCGAAAAAGTGTTTCAATACCAAGGGAAGTAGAGTCCCTCAAGGGTCTTCGTACTATGCGGGCTGCTTGTGG TGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAGTTCGAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTA CTTGGGGGGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCTCTCGTT GAACACAACTTTTGTCGAGTTGCTTGTGGACATAGTCTGACTGTTGTACTTACCACCTCAGGCCATGTCTATACCATGGG AAGTCCTGTCTATGGTCAGTTAGGAAATCCACAAGCTGATGGGAAGCTACCAACCCGCGTTGAAGGGAAATTGTCAAAGA GTTTTGTGGAGGAGATAGCTTGTGGTGCTTATCATGTTGCGGTTTTAACTTTAAGGAACGAAGTCTACACTTGGGGTAAA GGTGCAAATGGCCGTTTAGGCCATGGAGATACAGATGATAGAAATGCCCCAACATTAGTGGAAGCTCTTAAAGAAAAACA TGTCAAAAGTATCGCCTGCGGAACTAATATCACTGCAGCTATCTGTCTGCATAAGTGGGTTTCTGGTGTTGACCAGTCTA TGTGTTCTGGTTGTCGTATGCCGTTTAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGCCTTGTTTTTTGTCAT TCATGTAGCAGTAAGAAGTCTCATAAGGCTTCAATGGCGCCAAACCCCAATAAACCTTATCGTGTCTGTGATAGTTGTTT TAATAAACTTAGGAAAACTGTAGAAACTGATTCTTCATCTCACTCTTCTATTAGCAGAAGAGGAAGTATAAATCAAGGGT CTGAAATGGTTGATAAGGATGATAAATTTGATTCCAGATCTCGTAATCAACTTGCCAGGTTTTCTTCAATGGAATCATTC AAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGCCGTGTCTCGCCTGTTCCAAATGG GGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCGGCTT CTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCTCCAATATCTAGACGGCCTAGTCCGCCACGTTCAACTACTCCA ACCCCAACACTGGGAGGTCTTACATCCCCGAAAATAGTTGTGGATGATGCTAAGAGGACTAATGATAGCCTCAGTCAGGA GGTTATTAAATTAAGACAGCAGGTATCTTTTTTATGCATTCACTTACAATATTCCCTTTCTTGTTATAAAGTTCAAATAG AATTTTAACAAAAAAGGACTTATAGTTTGCACCCGATTTTATTCAACCAATTCTTTTCTTATGACATTAGTTTCTATGAA TTTGTCTGATGAAATGGCATAGACAACATGTGGAAACAAAAGCAAGGATCTTGGATGTTGTTAGCAAGATGCCTCCTCAT TGAGCTGACTTGTTTACTTTCTGCATTGTCTGAAAATACCTAATAGATGAATCACAATTTAAATTCCAACTACCACTTAA ATGCACTTGCTAGAAATGTAGTATCTCCATGTAATTAAATATATATACTACAATGCAAAATGTTTAGCAACATCATTGTT GAATGTCACAGTTCTATGATTTAACCTTTTATTTAATAATTACAAAGAAAAAAAATTAACAGTGGGTTGATTTTGATTCT TACAGAGCACTTCTTTTTTTAAGGGTTTCAAATAATCAATTATAGAGCTTATTCTCATCACCCATCAACAATTTTTTTTT CTCATAAATAGTTGACTGTTCGATATAGTGGATGCCTGATATCATTAATTTACTTTCATAGGTGGGAAATAATTTGTAGA CATGCAACAAGGATGTTTAACTCACATGGTTGTCTATTTGTTGTGAGCGTTAAACATTGAAATTGTTTCCCCCCTTTTAG GTGGAAAGCCTGACTCGGAAAGCCCAACTTCAAGAAGTCGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGC AATTGCCGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAGGAAGTAATCAAGTCTCTGACTGCCCAGGTAGAAACTTTAA TCCCTTGGAACACTTTAACAAATTAGACTACTATATATTTGACACAAATCAGCTGTCATGTCCTATAATAACTTATCTTA GAAAAAACAATATGCATTGAAGATGCACTGAGCTAACACTCATCTACCCTAAATATAAATTGTAAAGTCATAAGATGTTA AAGTCAGACCCAATATCAATTTTAAGCCAAACCAAAGTAACGAAATTTTTAATGGCTTAATACATCAGAAGGCCCCTGAA ATTGTAAAGGAAATCAGTTTCAGGGCCTGAAAAATTTTCGCATCAAATTGGGTCCTTAAGAAATTTTTTTTAATTCAATT AAGGCCAAATCTCAATTTTGTCCTAGTCATCAATTACACGTGACTTTTATAATTTTTTTAAATTAAAAAAAACTAAAAAT TATTTTTAAAAAAAAATTAAATTTGGCCTTAAAAAAAATTAAAAATATTTGCCCTAAAAGAAAATTTAAAAATTTGGCTT TTAATTCAATTAAAATTTTATTTGGCCTTAAAAAAAATAATTTTTTTTAATGAGTTGGAATTAAAAATAATTTTTATTTT ATTTTTAATTAAAAAAAATTATAAAAGCCACGTGGAATTGATGACTGGGATAAAATTGAAGGCTGGCACACTTTGGCCTT AATTGAATTAAAAAAAATATTTCTAGGGACCCAATTTGATGCAAAAAAATTTCAGGCCCTGGATTTGATTCCCTTTACAA TTACAGGGGTCTTCTGATGTATTAAGCCTATTTAAGCTCTTATCTTCTAACAATTTTTTGTGTGTCGATTTTTCATGTAT CATAACTAACTAATCCAACATTTTTTTTGTTTCTTCCGCTTAATAGTTGAAGGACATGGCTGAGCGGCTACCTGTAGGAG CAATTAGAAATGTCAAATCACCTTCTCTAGCTTCTTTTGGTTCCAATCCTTCTTCCAATGAAATTGGCTATGCTTCCATT GATCGATTAAATATTCAAGCAACAAGCCCAGAAGCAGACTTAGCTGGATCAAATAACCAGTCACTTTCAAATGGATCAAG CACGGTCAGTAATCGCAATGCAGGTCACACTAAACAGAGCCAGTCAGATTCTAATAATAGAAATGGGAGCAGAACAAAGG ATAGTGAATCTCGTAATGAGAGTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACCCTCACCTCCCTACCAGGA GGTGTAAAAGATCTTAAGAGAGTTCGATTCAGGTATGGAATGCTCTTTAGACATTGATTTTCTGTCAGCACACAGAACTT CTGTGAAATTTGGTCATGTAGAATATGATATGCTTTTATTGAAAAAGGAAAAAGTAGAACTTGGGATTCATGGTGTTAGG ACTATGACAATAACTATTCCTAGGTCAAATGACAAACTAATGGCAATTTAGTCTCTTTTAGGGCCTGAAATATTTTGATG CAGTTGAGTGCTTTACTTCAATGGATGAGTGAGTTATAGTGTTCTACTTGCTTGTGTACCTTTTAGCTGTCGAGCAACTT TGCTTTCCGTTGTGTTTGAGGAGCCAGAATTATGATTGCTTCCCAGCTTGGCAAAAGTTTATTTTTGCCATGCTAACATG ATTTTGATCCTTCACTGGCTCAGCAATTACTAACGGGAGTAACATTGAGAATAGAAATGGATTGTGTTCTATTATTGCCA AGAACATTCCTGACTGGTCTATTTGTCATGTTTCATGTCTTGATCAGCTGCAGATTTACTTTATCTTGAAACTATATAGT AATCTCCCACCATAATGTTTCATTCTATAATTTGGTATCTGCTGGGACAAATTAGAAAACTACATAGTATTCTATGATCG GACAAAATTTGACGCAGCTTCATACATGTTTTTACTAATGTCCAATTATAACATGACACATGGGTTAGAAAATGGGAAGT TGAGGGACGTTATCACATTAATAAAATATGAAGAAAGTAGATGATTGAACTTTTAATTAGGAAACAACATGAACAATATA TATATATATATAGTGCAGTATATATAGATAGATAGATAGATAGATAGTACAATATCTAAGTTTTGTCCTTTATGATTATC CATTTTTTAATGAGTTTTGACTATAATGTTGGTGAATGCAGTCGAAAGCGGTTCAGTGAGAAACAAGCAGAGCAATGGTG GGCTGAGAACCGGGCAAGAGTATATGAACAGTACAATGTACGAATGATTGACAAGTCCAGTGTTGGTGTTGGGAGTGATG ACCTGGCTCATTGA
CDS sequence (LotjaGi1g1v0049200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGGTCACATGAGGACGGTGGGTATGGATGCTTTCAGGGTTAGTCTGTCAAGTGCTGTTAGCTCATCTAGCCAAGG TTCTGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTG GGAATCATCGAGTTGGGAGTTCTTTGGGTGTAAAAATTGATTCTCTATTTCCTAAAGCCTTGGAATCTGCAGTAGTTCTT GATGTACAGAATATTGCTTGTGGCGGACGACATGCGGCCTTAGTGACCAAACAAGGTGAAATTTTCTCCTGGGGTGAGGA ATCAGGAGGCAGGCTTGGGCATGGTGTTGACTCTGATGTTCTCCAACCAAAGCTTATAGAAGCTCTAAGTAATACAAATA TTGAACTTGTGGCTTGTGGGGAGTACCATACTTGTGCTGTGACCCTTTCTGGTGATCTTTATACATGGGGTAATGGCACA TACAATTATGGTCTTCTGGGACATGGAAATCAAGTCAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAAGGCAT ACATGTTTCATATATTTCATGTGGACCATGGCACACTGCTGTTGTAACATCTTCTGGGCAATTATTTACTTTTGGTGATG GTACATTTGGTGCTTTGGGTCATGGTGACCGAAAAAGTGTTTCAATACCAAGGGAAGTAGAGTCCCTCAAGGGTCTTCGT ACTATGCGGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAGTTCGAGTTCCAGCAACTG CTCTTCAGGGAAGCTGTTTACTTGGGGGGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTC CAACCTGTGTTGCTCTCGTTGAACACAACTTTTGTCGAGTTGCTTGTGGACATAGTCTGACTGTTGTACTTACCACCTCA GGCCATGTCTATACCATGGGAAGTCCTGTCTATGGTCAGTTAGGAAATCCACAAGCTGATGGGAAGCTACCAACCCGCGT TGAAGGGAAATTGTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCTTATCATGTTGCGGTTTTAACTTTAAGGAACG AAGTCTACACTTGGGGTAAAGGTGCAAATGGCCGTTTAGGCCATGGAGATACAGATGATAGAAATGCCCCAACATTAGTG GAAGCTCTTAAAGAAAAACATGTCAAAAGTATCGCCTGCGGAACTAATATCACTGCAGCTATCTGTCTGCATAAGTGGGT TTCTGGTGTTGACCAGTCTATGTGTTCTGGTTGTCGTATGCCGTTTAATTTCAAAAGGAAACGCCACAATTGTTATAACT GTGGCCTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCATAAGGCTTCAATGGCGCCAAACCCCAATAAACCTTAT CGTGTCTGTGATAGTTGTTTTAATAAACTTAGGAAAACTGTAGAAACTGATTCTTCATCTCACTCTTCTATTAGCAGAAG AGGAAGTATAAATCAAGGGTCTGAAATGGTTGATAAGGATGATAAATTTGATTCCAGATCTCGTAATCAACTTGCCAGGT TTTCTTCAATGGAATCATTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGCCGT GTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCATC AAAGAAATTTTTCTCGGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCTCCAATATCTAGACGGCCTAGTC CGCCACGTTCAACTACTCCAACCCCAACACTGGGAGGTCTTACATCCCCGAAAATAGTTGTGGATGATGCTAAGAGGACT AATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGACAGCAGGTGGAAAGCCTGACTCGGAAAGCCCAACTTCAAGAAGT CGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACTGCCAAATGTAAAGCAGCAA AGGAAGTAATCAAGTCTCTGACTGCCCAGTTGAAGGACATGGCTGAGCGGCTACCTGTAGGAGCAATTAGAAATGTCAAA TCACCTTCTCTAGCTTCTTTTGGTTCCAATCCTTCTTCCAATGAAATTGGCTATGCTTCCATTGATCGATTAAATATTCA AGCAACAAGCCCAGAAGCAGACTTAGCTGGATCAAATAACCAGTCACTTTCAAATGGATCAAGCACGGTCAGTAATCGCA ATGCAGGTCACACTAAACAGAGCCAGTCAGATTCTAATAATAGAAATGGGAGCAGAACAAAGGATAGTGAATCTCGTAAT GAGAGTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACCCTCACCTCCCTACCAGGAGGTGTAAAAGATCTTAA GAGAGTTCGATTCAGTCGAAAGCGGTTCAGTGAGAAACAAGCAGAGCAATGGTGGGCTGAGAACCGGGCAAGAGTATATG AACAGTACAATGTACGAATGATTGACAAGTCCAGTGTTGGTGTTGGGAGTGATGACCTGGCTCATTGA
Protein sequence (LotjaGi1g1v0049200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHGHMRTVGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSSLGVKIDSLFPKALESAVVL DVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLQPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGT YNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSSGQLFTFGDGTFGALGHGDRKSVSIPREVESLKGLR TMRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALVEHNFCRVACGHSLTVVLTTS GHVYTMGSPVYGQLGNPQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTLRNEVYTWGKGANGRLGHGDTDDRNAPTLV EALKEKHVKSIACGTNITAAICLHKWVSGVDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSHKASMAPNPNKPY RVCDSCFNKLRKTVETDSSSHSSISRRGSINQGSEMVDKDDKFDSRSRNQLARFSSMESFKQVESRSSKKNKKLEFNSSR VSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRT NDSLSQEVIKLRQQVESLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAIRNVK SPSLASFGSNPSSNEIGYASIDRLNIQATSPEADLAGSNNQSLSNGSSTVSNRNAGHTKQSQSDSNNRNGSRTKDSESRN ESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSSVGVGSDDLAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 862 | 862 | 0.0 | – | |
PANTHER | 1 | 862 | 862 | 0.0 | – | |
Gene3D | 33 | 256 | 224 | 4.3E-57 | ||
SUPERFAMILY | 36 | 426 | 391 | 3.66E-97 | ||
ProSiteProfiles | 37 | 98 | 62 | 12.052 | ||
PRINTS | 82 | 95 | 14 | 1.5E-17 | ||
ProSitePatterns | 85 | 95 | 11 | - | ||
Pfam | 99 | 147 | 49 | 3.3E-11 | ||
ProSiteProfiles | 99 | 150 | 52 | 15.228 | ||
PRINTS | 101 | 117 | 17 | 1.5E-17 | ||
Pfam | 150 | 202 | 53 | 9.9E-11 | ||
ProSiteProfiles | 151 | 205 | 55 | 14.122 | ||
PRINTS | 151 | 167 | 17 | 1.5E-17 | ||
ProSitePatterns | 192 | 202 | 11 | - | ||
PRINTS | 192 | 208 | 17 | 1.5E-17 | ||
Pfam | 205 | 254 | 50 | 6.6E-12 | ||
ProSiteProfiles | 206 | 257 | 52 | 12.635 | ||
PRINTS | 208 | 222 | 15 | 1.5E-17 | ||
Gene3D | 257 | 435 | 179 | 3.7E-45 | ||
Pfam | 269 | 317 | 49 | 1.7E-12 | ||
ProSiteProfiles | 270 | 320 | 51 | 15.107 | ||
PRINTS | 310 | 328 | 19 | 1.5E-17 | ||
Pfam | 320 | 369 | 50 | 6.6E-8 | ||
ProSiteProfiles | 321 | 372 | 52 | 13.097 | ||
PRINTS | 368 | 389 | 22 | 1.5E-17 | ||
ProSiteProfiles | 373 | 424 | 52 | 14.705 | ||
Pfam | 374 | 421 | 48 | 6.3E-14 | ||
SMART | 423 | 492 | 70 | 9.1E-19 | ||
SUPERFAMILY | 425 | 496 | 72 | 2.59E-17 | ||
Pfam | 425 | 491 | 67 | 2.3E-13 | ||
ProSiteProfiles | 429 | 491 | 63 | 11.764 | ||
CDD | 434 | 487 | 54 | 3.53257E-17 | – | |
Gene3D | 436 | 492 | 57 | 4.4E-15 | ||
MobiDBLite | 497 | 572 | 76 | - | – | |
MobiDBLite | 497 | 512 | 16 | - | – | |
MobiDBLite | 513 | 528 | 16 | - | – | |
MobiDBLite | 557 | 572 | 16 | - | – | |
MobiDBLite | 602 | 630 | 29 | - | – | |
Coils | 634 | 675 | 42 | - | – | |
Pfam | 685 | 718 | 34 | 1.3E-17 | ||
Coils | 690 | 710 | 21 | - | – | |
Pfam | 726 | 795 | 70 | 1.0E-22 | – | |
MobiDBLite | 753 | 789 | 37 | - | – | |
MobiDBLite | 753 | 806 | 54 | - | – | |
MobiDBLite | 790 | 806 | 17 | - | – | |
Pfam | 801 | 856 | 56 | 1.8E-29 | ||
ProSiteProfiles | 802 | 857 | 56 | 35.54 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0049200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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