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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001611
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 861 results. Now displaying 4 of 18 with 50 rows per page. This search has taken 5.586s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2141160.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cicer arietinum] gi|502131353|ref|XP_004500957.1| chr1 25859190 25863184 +
3 domain predictions
1 GO term
Lj1g3v2143310.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cicer arietinum] gi|502131353|ref|XP_004500957.1| chr1 25894101 25894472 +
2 domain predictions
1 GO term
Lj1g3v2157650.1
n.a. Cyclin-like F-box [Medicago truncatula] gi|124359880|gb|ABD32480.2| chr1 26058328 26059326 +
2 domain predictions
1 GO term
Lj1g3v2157660.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr1 26059102 26059657 +
2 domain predictions
1 GO term
Lj1g3v2312930.1
n.a. n.a. chr1 27184595 27206641 -
3 domain predictions
1 GO term
Lj1g3v2312950.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max] gi|356523290|ref|XP_003530273.1| chr1 27196031 27207565 +
2 domain predictions
1 GO term
Lj1g3v2372340.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max] gi|356566696|ref|XP_003551566.1| chr1 27833962 27838612 +
4 domain predictions
1 GO term
Lj1g3v2377960.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Glycine max] gi|356521068|ref|XP_003529180.1| chr1 28075457 28079707 +
4 domain predictions
1 GO term
Lj1g3v2377960.2
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357506189|ref|XP_003623383.1| chr1 28075457 28082926 +
4 domain predictions
1 GO term
Lj1g3v2482450.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Glycine max] gi|356530171|ref|XP_003533657.1| chr1 28788792 28793022 -
4 domain predictions
1 GO term
Lj1g3v2809340.1
n.a. leucine-rich repeat receptor-like protein [Lotus japonicus] gi|336088213|dbj|BAK39955.1| chr1 31969424 31972700 +
3 domain predictions
1 GO term
Lj1g3v2883920.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like isoform X1 [Cicer arietinum] gi|502106207|ref|XP_004492888.1| chr1 32542899 32545980 -
2 domain predictions
1 GO term
Lj1g3v2910560.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like isoform X1 [Cicer arietinum] gi|502106329|ref|XP_004492917.1| chr1 32782596 32784388 -
3 domain predictions
1 GO term
Lj1g3v2910590.1
n.a. n.a. chr1 32787406 32792227 +
2 domain predictions
1 GO term
Lj1g3v2952270.1
n.a. PREDICTED: receptor-like protein kinase-like [Glycine max] gi|356529280|ref|XP_003533223.1| chr1 33453749 33456980 +
3 domain predictions
1 GO term
Lj1g3v3103680.2
n.a. PREDICTED: protein NSP-INTERACTING KINASE 1-like [Glycine max] gi|356526591|ref|XP_003531900.1| chr1 35223426 35225517 -
2 domain predictions
1 GO term
Lj1g3v3116520.1
n.a. PREDICTED: probable disease resistance protein At4g27220-like [Glycine max] gi|356567184|ref|XP_003551801.1| chr1 35476539 35478932 +
2 domain predictions
1 GO term
Lj1g3v3171130.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Glycine max] gi|356499695|ref|XP_003518672.1| chr1 35938585 35942574 -
3 domain predictions
1 GO term
Lj1g3v3407720.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Glycine max] gi|356509565|ref|XP_003523518.1| chr1 39408986 39415403 -
3 domain predictions
1 GO term
Lj1g3v3834120.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max] gi|356570123|ref|XP_003553240.1| chr1 43589171 43594271 +
3 domain predictions
1 GO term
Lj1g3v3964670.1
n.a. PREDICTED: phytosulfokine receptor 1-like [Glycine max] gi|356570241|ref|XP_003553298.1| chr1 46512608 46525646 -
3 domain predictions
1 GO term
Lj1g3v3964670.2
n.a. PREDICTED: phytosulfokine receptor 1-like [Glycine max] gi|356570241|ref|XP_003553298.1| chr1 46517847 46525646 -
3 domain predictions
1 GO term
Lj1g3v3977170.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max] gi|356560829|ref|XP_003548689.1| chr1 47197596 47215688 +
3 domain predictions
1 GO term
Lj1g3v4252300.1
n.a. PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820-like [Glycine max] gi|356572038|ref|XP_003554177.1| chr1 50206855 50211185 +
2 domain predictions
1 GO term
Lj1g3v4289020.2
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940-like [Glycine max] gi|356572056|ref|XP_003554186.1| chr1 50519261 50522517 +
3 domain predictions
1 GO term
Lj1g3v4304260.1
n.a. PREDICTED: polygalacturonase inhibitor-like [Cicer arietinum] gi|502109061|ref|XP_004493557.1| chr1 50630479 50631311 -
2 domain predictions
1 GO term
Lj1g3v4315310.1
n.a. PREDICTED: polygalacturonase inhibitor-like [Glycine max] gi|356572074|ref|XP_003554195.1| chr1 50650237 50651594 -
2 domain predictions
1 GO term
Lj1g3v4315330.1
n.a. PREDICTED: polygalacturonase inhibitor-like [Glycine max] gi|356572074|ref|XP_003554195.1| chr1 50657647 50659020 -
2 domain predictions
1 GO term
Lj1g3v4316400.1
n.a. PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 2-like [Cicer arietinum] gi|502109101|ref|XP_004493566.1| chr1 50713517 50719144 -
2 domain predictions
1 GO term
Lj1g3v4404370.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356570538|ref|XP_003553442.1| chr1 51333999 51335668 -
2 domain predictions
1 GO term
Lj1g3v4515870.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Solanum lycopersicum] gi|460404056|ref|XP_004247501.1| chr1 53126599 53130958 -
4 domain predictions
1 GO term
Lj1g3v4528370.1
n.a. PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Glycine max] gi|356570674|ref|XP_003553510.1| chr1 53294622 53298488 -
2 domain predictions
1 GO term
Lj1g3v4528370.2
n.a. PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Glycine max] gi|356570674|ref|XP_003553510.1| chr1 53294622 53298706 -
2 domain predictions
1 GO term
Lj1g3v4538830.1
n.a. RNI-like superfamily protein [Arabidopsis thaliana] gi|42569177|ref|NP_179611.2| chr1 53559876 53566372 +
2 domain predictions
1 GO term
Lj1g3v4538830.2
n.a. RNI-like superfamily protein [Arabidopsis thaliana] gi|42569177|ref|NP_179611.2| chr1 53559876 53566372 +
2 domain predictions
1 GO term
Lj1g3v4918600.1
n.a. PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] gi|356505803|ref|XP_003521679.1| chr1 59655230 59659471 +
2 domain predictions
1 GO term
Lj1g3v5020750.1
n.a. CM0545.400.nc [Lotus japonicus] gi|164605529|dbj|BAF98595.1| chr1 61044612 61045833 -
4 domain predictions
1 GO term
Lj1g3v5061080.1
n.a. PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max] gi|356504209|ref|XP_003520891.1| chr1 62029906 62032098 +
5 domain predictions
1 GO term
Lj2g3v0561190.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356561798|ref|XP_003549165.1| chr2 7495060 7498988 +
3 domain predictions
1 GO term
Lj2g3v0636320.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr2 10104093 10107525 -
5 domain predictions
1 GO term
Lj2g3v0636420.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr2 10122703 10126263 -
4 domain predictions
1 GO term
Lj2g3v0636460.1
n.a. PREDICTED: receptor-like protein 12-like [Cicer arietinum] gi|502177353|ref|XP_004516064.1| chr2 10132552 10133187 -
2 domain predictions
1 GO term
Lj2g3v0636470.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495019|ref|XP_003516378.1| chr2 10133518 10135060 -
3 domain predictions
1 GO term
Lj2g3v0661330.1
n.a. leucine-rich repeat family protein [Arabidopsis lyrata subsp]. lyrata] gi|297847122|ref|XP_002891442.1| chr2 10630698 10642667 -
3 domain predictions
1 GO term
Lj2g3v0743220.1
n.a. leucine-rich repeat receptor-like protein [Lotus japonicus] gi|336088213|dbj|BAK39955.1| chr2 11781923 11784097 +
3 domain predictions
1 GO term
Lj2g3v0852080.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356495853|ref|XP_003516786.1| chr2 13095422 13099091 -
4 domain predictions
1 GO term
Lj2g3v0852090.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356497583|ref|XP_003517639.1| chr2 13100029 13103881 -
3 domain predictions
1 GO term
Lj2g3v0854120.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Cicer arietinum] gi|502164103|ref|XP_004513049.1| chr2 13113584 13117710 -
3 domain predictions
1 GO term
Lj2g3v0892280.1
n.a. PREDICTED: leucine-rich repeat extensin-like protein 6-like [Cicer arietinum] gi|502164171|ref|XP_004513070.1| chr2 13636707 13638527 -
3 domain predictions
1 GO term
Lj2g3v0914400.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RLK-like [Glycine max] gi|356511425|ref|XP_003524427.1| chr2 14206377 14209827 -
2 domain predictions
1 GO term