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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000626
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We have found 247 results. Now displaying 2 of 5 with 50 rows per page. This search has taken 6.245s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v1541340.1
n.a. PREDICTED: polyubiquitin 3-like [Cicer arietinum] gi|502134206|ref|XP_004502037.1| chr3 19712064 19712381 +
4 domain predictions
1 GO term
Lj3g3v2027460.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr3 25966680 25968751 +
4 domain predictions
1 GO term
Lj3g3v2665440.1
n.a. PREDICTED: probable splicing factor 3A subunit 1-like isoform X1 [Cicer arietinum] gi|502156678|ref|XP_004510593.1| chr3 32536806 32543438 -
4 domain predictions
1 GO term
Lj3g3v2704600.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like isoform X1 [Cicer arietinum] gi|502156184|ref|XP_004510348.1| chr3 33067377 33077433 -
4 domain predictions
1 GO term
Lj3g3v2807960.1
n.a. PREDICTED: pre-mRNA-processing factor 6-like [Glycine max] gi|356543817|ref|XP_003540356.1| chr3 34348727 34352457 -
3 domain predictions
1 GO term
Lj3g3v2900800.1
n.a. Ubiquitin-like superfamily protein [Theobroma cacao] gi|508712092|gb|EOY03989.1| chr3 35949026 35951430 -
3 domain predictions
1 GO term
Lj4g3v0120060.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr4 1198249 1204150 +
4 domain predictions
1 GO term
Lj4g3v0473160.1
n.a. ubiquitin-60S ribosomal protein L40 fusion protein [Puccinia graminis f]. sp. tritici CRL 75-36-700-3] gi|331229396|ref|XP_003327364.1| chr4 7196182 7198192 -
4 domain predictions
1 GO term
Lj4g3v0473170.1
n.a. LOC100282068 [Zea mays] gi|226502871|ref|NP_001148453.1| chr4 7200781 7203227 -
4 domain predictions
1 GO term
Lj4g3v1140610.1
n.a. Ubiquitin family protein [Theobroma cacao] gi|508776797|gb|EOY24053.1| chr4 17006611 17017575 +
2 domain predictions
1 GO term
Lj4g3v1335320.1
n.a. PREDICTED: BAG family molecular chaperone regulator 1-like isoform X1 [Cicer arietinum] gi|502176087|ref|XP_004515796.1| chr4 20976745 20978965 -
2 domain predictions
1 GO term
Lj4g3v1970880.1
n.a. CIP73 protein [Lotus japonicus] gi|294516726|gb|ADE96995.1| chr4 27346111 27356209 +
4 domain predictions
1 GO term
Lj4g3v1970880.3
n.a. CIP73 protein [Lotus japonicus] gi|294516726|gb|ADE96995.1| chr4 27346306 27353638 +
4 domain predictions
1 GO term
Lj4g3v2690700.1
n.a. PREDICTED: ubiquitin-like domain-containing CTD phosphatase-like [Glycine max] gi|356525365|ref|XP_003531295.1| chr4 36201008 36204305 +
4 domain predictions
1 GO term
Lj4g3v2883290.1
n.a. PREDICTED: membrane-anchored ubiquitin-fold protein 3-like isoform X2 [Cicer arietinum] gi|502139460|ref|XP_004503776.1| chr4 38633380 38647907 +
2 domain predictions
1 GO term
Lj4g3v2883290.2
n.a. PREDICTED: membrane-anchored ubiquitin-fold protein 3-like isoform X2 [Cicer arietinum] gi|502139460|ref|XP_004503776.1| chr4 38633380 38647750 +
2 domain predictions
1 GO term
Lj5g3v0266930.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502126477|ref|XP_004499322.1| chr5 2204011 2214243 -
4 domain predictions
1 GO term
Lj5g3v0266930.2
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502126477|ref|XP_004499322.1| chr5 2204011 2214243 -
4 domain predictions
1 GO term
Lj5g3v0790850.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr5 11384931 11386768 -
4 domain predictions
1 GO term
Lj5g3v1495690.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like protein-like [Cicer arietinum] gi|502086378|ref|XP_004488199.1| chr5 21688164 21690545 +
4 domain predictions
1 GO term
Lj5g3v1495690.2
n.a. PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like protein-like [Cicer arietinum] gi|502086378|ref|XP_004488199.1| chr5 21688164 21691755 +
4 domain predictions
1 GO term
Lj5g3v2027260.1
n.a. PREDICTED: BAG family molecular chaperone regulator 1-like [Cicer arietinum] gi|502119390|ref|XP_004496603.1| chr5 28594811 28596107 +
2 domain predictions
1 GO term
Lj5g3v2060710.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr5 29780747 29782887 -
4 domain predictions
1 GO term
Lj5g3v2215070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr5 31881296 31885879 +
4 domain predictions
1 GO term
Lj6g3v0670020.1
n.a. PREDICTED: DNA damage-inducible protein 1-like [Cicer arietinum] gi|502129048|ref|XP_004500164.1| chr6 6645889 6654281 +
4 domain predictions
1 GO term
Lj6g3v1077820.1
n.a. Ubiquitin-like domain-containing CTD phosphatase [Medicago truncatula] gi|357519321|ref|XP_003629949.1| chr6 12612375 12618110 +
4 domain predictions
1 GO term
Lj6g3v1093250.1
n.a. PREDICTED: NEDD8 ultimate buster 1-like [Glycine max] gi|356530579|ref|XP_003533858.1| chr6 13297706 13303416 +
2 domain predictions
1 GO term
Lj6g3v1160790.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356520102|ref|XP_003528704.1| chr6 14114496 14116061 -
4 domain predictions
1 GO term
Lj6g3v1754520.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr6 19845518 19848718 +
3 domain predictions
1 GO term
Lj6g3v1946550.1
n.a. PREDICTED: BAG family molecular chaperone regulator 3-like [Cicer arietinum] gi|502078563|ref|XP_004485986.1| chr6 22295777 22298838 -
4 domain predictions
1 GO term
LotjaGi1g1v0066600.1
n.a. Small ubiquitin-related modifier; TAIR: AT5G55160.1 small ubiquitin-like modifier 2; Swiss-Prot: sp|Q9FLP6|SUMO2_ARATH Small ubiquitin-related modifier 2; TrEMBL-Plants: tr|I3SQZ4|I3SQZ4_LOTJA Small ubiquitin-related modifier; Found in the gene: LotjaGi1g1v0066600 LjG1.1_chr1 9175199 9178012 -
3 domain predictions
1 GO term
LotjaGi1g1v0082800_LC.1
n.a. Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0082800_LC LjG1.1_chr1 11922155 11925422 -
3 domain predictions
1 GO term
LotjaGi1g1v0210100.1
n.a. ATP-dependent RNA helicase-like protein; TAIR: AT5G08110.3 UBQ, helicase-c and DEAD-like helicase domain-containing protein; Swiss-Prot: sp|Q05549|HRQ1_YEAST ATP-dependent helicase HRQ1; TrEMBL-Plants: tr|K7KW92|K7KW92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0210100 LjG1.1_chr1 45977252 46002591 +
3 domain predictions
1 GO term
LotjaGi1g1v0285300.1
n.a. phosphatidylinositol 4-kinase gamma-like protein; TAIR: AT5G24240.1 phosphatidylinositol 4-kinase gamma-like protein; Swiss-Prot: sp|Q9FNF8|P4KG3_ARATH Phosphatidylinositol 4-kinase gamma 3; TrEMBL-Plants: tr|A0A0B2QD11|A0A0B2QD11_GLYSO Putative phosphatidylinositol 4-kinase type 2-beta; Found in the gene: LotjaGi1g1v0285300 LjG1.1_chr1 69348946 69352659 -
4 domain predictions
1 GO term
LotjaGi1g1v0293700.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0293700 LjG1.1_chr1 71198167 71201263 +
4 domain predictions
1 GO term
LotjaGi1g1v0444400.1
n.a. BAG family molecular chaperone regulator; TAIR: AT3G51780.1 BCL-2-associated athanogene 4; Swiss-Prot: sp|Q8RX71|BAG4_ARATH BAG family molecular chaperone regulator 4; TrEMBL-Plants: tr|A0A1J7H3I9|A0A1J7H3I9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0444400 LjG1.1_chr1 94186226 94195172 +
2 domain predictions
1 GO term
LotjaGi1g1v0475700_LC.1
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0475700_LC LjG1.1_chr1 98681909 98684448 -
4 domain predictions
1 GO term
LotjaGi1g1v0509300.1
n.a. Membrane-anchored ubiquitin-fold protein; TAIR: AT3G01050.1 membrane-anchored ubiquitin-fold protein 1 precursor; Swiss-Prot: sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1; TrEMBL-Plants: tr|I3STY9|I3STY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0509300 LjG1.1_chr1 102826169 102832328 -
2 domain predictions
1 GO term
LotjaGi1g1v0509300.2
n.a. Membrane-anchored ubiquitin-fold protein; TAIR: AT5G15460.1 membrane-anchored ubiquitin-fold protein 2; Swiss-Prot: sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1; TrEMBL-Plants: tr|I3STY9|I3STY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0509300 LjG1.1_chr1 102829523 102831247 -
2 domain predictions
1 GO term
LotjaGi1g1v0550600.1
n.a. RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L30|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr|I3SBD5|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600 LjG1.1_chr1 108165035 108170749 +
4 domain predictions
1 GO term
LotjaGi1g1v0588800.1
n.a. Small ubiquitin-related modifier; TAIR: AT5G55160.1 small ubiquitin-like modifier 2; Swiss-Prot: sp|Q9FLP6|SUMO2_ARATH Small ubiquitin-related modifier 2; TrEMBL-Plants: tr|I3SW62|I3SW62_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0588800 LjG1.1_chr1 112920558 112924153 +
2 domain predictions
1 GO term
LotjaGi1g1v0588800.2
n.a. Small ubiquitin-related modifier; TAIR: AT5G55160.1 small ubiquitin-like modifier 2; Swiss-Prot: sp|Q9FLP6|SUMO2_ARATH Small ubiquitin-related modifier 2; TrEMBL-Plants: tr|I3SW62|I3SW62_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0588800 LjG1.1_chr1 112920616 112924148 +
2 domain predictions
1 GO term
LotjaGi1g1v0616100.1
n.a. BAG family molecular chaperone regulator 2; TAIR: AT5G14360.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q0WPX7|BAG2_ARATH BAG family molecular chaperone regulator 2; TrEMBL-Plants: tr|V7B4M2|V7B4M2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0616100 LjG1.1_chr1 116289840 116291291 -
3 domain predictions
1 GO term
LotjaGi1g1v0628400.1
n.a. Membrane-anchored ubiquitin-fold protein; TAIR: AT3G26980.1 membrane-anchored ubiquitin-fold protein 4 precursor; Swiss-Prot: sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4; TrEMBL-Plants: tr|I3T0G8|I3T0G8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0628400 LjG1.1_chr1 117841567 117848092 -
2 domain predictions
1 GO term
LotjaGi1g1v0628400.2
n.a. Membrane-anchored ubiquitin-fold protein; TAIR: AT3G26980.1 membrane-anchored ubiquitin-fold protein 4 precursor; Swiss-Prot: sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4; TrEMBL-Plants: tr|I3T0G8|I3T0G8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0628400 LjG1.1_chr1 117845191 117847560 -
2 domain predictions
1 GO term
LotjaGi1g1v0674100.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0674100 LjG1.1_chr1 123997277 124000362 +
4 domain predictions
1 GO term
LotjaGi1g1v0743800.1
n.a. NPL4 family protein; TAIR: AT2G47970.1 Nuclear pore localization protein NPL4; Swiss-Prot: sp|O82264|NPL42_ARATH NPL4-like protein 2; TrEMBL-Plants: tr|I1JQF4|I1JQF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0743800 LjG1.1_chr1 131732575 131736867 -
2 domain predictions
1 GO term
LotjaGi1g1v0768800.1
n.a. Membrane-anchored ubiquitin-fold protein; TAIR: AT1G22050.1 membrane-anchored ubiquitin-fold protein 6 precursor; Swiss-Prot: sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3; TrEMBL-Plants: tr|I3SYY1|I3SYY1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0768800 LjG1.1_chr1 134118620 134122538 +
2 domain predictions
1 GO term
LotjaGi1g1v0792800.1
n.a. Phosphatidylinositol 4-kinase gamma 4; TAIR: AT2G46500.1 phosphoinositide 4-kinase gamma 4; Swiss-Prot: sp|Q9ZPY9|P4KG4_ARATH Phosphatidylinositol 4-kinase gamma 4; TrEMBL-Plants: tr|A0A0B2S8S6|A0A0B2S8S6_GLYSO Putative phosphatidylinositol 4-kinase type 2-beta; Found in the gene: LotjaGi1g1v0792800 LjG1.1_chr1 136428859 136436682 +
4 domain predictions
1 GO term
LotjaGi2g1v0005700_LC.1
n.a. Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0005700_LC LjG1.1_chr2 1988896 1998886 -
2 domain predictions
1 GO term