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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001005
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 663 results. Now displaying 6 of 14 with 50 rows per page. This search has taken 6.436s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v0615930.2
n.a. PREDICTED: transcription factor ASG4-like [Glycine max] gi|356545959|ref|XP_003541400.1| chr5 7967961 7973083 +
3 domain predictions
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Lj5g3v0659660.1
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262216 +
2 domain predictions
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Lj5g3v0659660.2
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262695 +
2 domain predictions
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Lj5g3v0659660.3
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9260071 9262695 +
2 domain predictions
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Lj5g3v0659720.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356515054|ref|XP_003526216.1| chr5 9279481 9282099 +
2 domain predictions
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Lj5g3v0900910.1
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502122817|ref|XP_004497904.1| chr5 13428619 13432199 +
2 domain predictions
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Lj5g3v1516750.1
n.a. PREDICTED: telomere repeat-binding factor 4-like isoform X1 [Cicer arietinum] gi|502081399|ref|XP_004486855.1| chr5 22107626 22111188 -
3 domain predictions
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Lj5g3v1533360.1
n.a. R2R3-MYB transcription factor [Medicago truncatula] gi|357441967|ref|XP_003591261.1| chr5 22434409 22436259 +
3 domain predictions
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Lj5g3v1562120.1
n.a. R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330300|gb|AFK29428.1| chr5 22819948 22821274 +
3 domain predictions
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Lj5g3v1601810.1
n.a. PREDICTED: transcription factor MYB12-like [Glycine max] gi|356534872|ref|XP_003535975.1| chr5 23243576 23247336 -
3 domain predictions
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Lj5g3v1697860.1
n.a. PREDICTED: myb family transcription factor APL-like [Cicer arietinum] gi|502118139|ref|XP_004496120.1| chr5 24448260 24451694 -
2 domain predictions
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Lj5g3v1770430.1
n.a. PREDICTED: trihelix transcription factor GT-2-like [Glycine max] gi|356574655|ref|XP_003555461.1| chr5 25123988 25127079 +
2 domain predictions
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Lj5g3v1774720.1
n.a. Two-component response regulator ARR14 [Medicago truncatula] gi|357488375|ref|XP_003614475.1| chr5 25244005 25246435 +
2 domain predictions
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Lj5g3v1839400.1
n.a. Nuclear receptor corepressor [Medicago truncatula] gi|357443347|ref|XP_003591951.1| chr5 26227010 26236513 +
3 domain predictions
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Lj5g3v1839400.2
n.a. Nuclear receptor corepressor [Medicago truncatula] gi|357443347|ref|XP_003591951.1| chr5 26227010 26236513 +
3 domain predictions
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Lj5g3v1949840.1
n.a. PREDICTED: trihelix transcription factor GT-2-like [Cicer arietinum] gi|502119002|ref|XP_004496472.1| chr5 27527874 27531723 +
2 domain predictions
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Lj5g3v1988660.1
n.a. MYB transcription factor MYB148 [Glycine max] gi|110931796|gb|ABH02897.1| chr5 27904206 27908894 +
3 domain predictions
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Lj5g3v2013880.1
n.a. PREDICTED: transcription factor LAF1-like [Cicer arietinum] gi|502120069|ref|XP_004496837.1| chr5 28394582 28397466 -
3 domain predictions
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Lj5g3v2152710.1
n.a. PREDICTED: myb-related protein 315-like [Glycine max] gi|356573735|ref|XP_003555012.1| chr5 30817680 30818206 +
2 domain predictions
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Lj5g3v2237580.1
n.a. syringolide-induced protein 1-3-1B [Glycine max] gi|351725743|ref|NP_001237103.1| chr5 32082780 32084776 +
3 domain predictions
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Lj5g3v2241390.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357438793|ref|XP_003589673.1| chr5 32407199 32411612 -
2 domain predictions
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Lj5g3v2298100.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356553883|ref|XP_003545280.1| chr5 33860250 33860626 +
3 domain predictions
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Lj6g3v0029920.1
n.a. PREDICTED: myb-related protein Myb4-like [Glycine max] gi|356498363|ref|XP_003518022.1| chr6 524388 525678 -
3 domain predictions
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Lj6g3v0214740.1
n.a. PREDICTED: transcriptional adapter ADA2-like [Glycine max] gi|356551285|ref|XP_003544007.1| chr6 2162701 2173237 +
3 domain predictions
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Lj6g3v0412680.1
n.a. PREDICTED: transcription factor MYB32-like [Glycine max] gi|356539820|ref|XP_003538391.1| chr6 3920452 3922959 +
3 domain predictions
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Lj6g3v0607190.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502129228|ref|XP_004500230.1| chr6 6009628 6012321 +
3 domain predictions
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Lj6g3v0869180.1
n.a. Transcription factor [Medicago truncatula] gi|357459689|ref|XP_003600125.1| chr6 8644153 8647324 +
3 domain predictions
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Lj6g3v0933490.2
n.a. Transcription factor tfiiib component [Medicago truncatula] gi|357519631|ref|XP_003630104.1| chr6 10336670 10342728 +
2 domain predictions
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Lj6g3v1078590.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356530639|ref|XP_003533888.1| chr6 12927441 12932314 -
2 domain predictions
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Lj6g3v1078590.2
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356556600|ref|XP_003546612.1| chr6 12927441 12932314 -
2 domain predictions
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Lj6g3v1201220.1
n.a. R2R3-MYB transcription factor LjTT2b [Lotus japonicus] gi|225735545|dbj|BAG12894.2| chr6 14851022 14852167 +
3 domain predictions
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Lj6g3v1201340.3
n.a. R2R3-MYB transcription factor LjTT2a [Lotus japonicus] gi|169881229|dbj|BAG12893.1| chr6 14871356 14872928 -
3 domain predictions
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Lj6g3v1618130.1
n.a. PREDICTED: telomere repeat-binding factor 1-like [Cicer arietinum] gi|502080243|ref|XP_004486503.1| chr6 18150958 18158030 -
3 domain predictions
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Lj6g3v1694970.1
n.a. PREDICTED: myb family transcription factor APL-like isoform X1 [Cicer arietinum] gi|502079873|ref|XP_004486394.1| chr6 19171604 19176252 -
2 domain predictions
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Lj6g3v1694980.1
n.a. Myb family transcription factor [Medicago truncatula] gi|357448183|ref|XP_003594367.1| chr6 19181437 19186871 -
2 domain predictions
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Lj6g3v1694980.2
n.a. Myb family transcription factor [Medicago truncatula] gi|357448183|ref|XP_003594367.1| chr6 19181437 19186968 -
2 domain predictions
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Lj6g3v1720570.1
n.a. PREDICTED: trihelix transcription factor GT-2-like isoform X1 [Cicer arietinum] gi|502079721|ref|XP_004486347.1| chr6 19469520 19471705 -
2 domain predictions
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Lj6g3v1742780.1
n.a. PREDICTED: transcriptional adapter ADA2b-like [Glycine max] gi|356557975|ref|XP_003547285.1| chr6 19570843 19575861 -
3 domain predictions
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Lj6g3v1919360.1
n.a. Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1| chr6 21794206 21801643 +
2 domain predictions
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Lj6g3v2078010.1
n.a. Bromodomain protein [Medicago truncatula] gi|357446403|ref|XP_003593479.1| chr6 24402325 24406558 +
2 domain predictions
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Lj6g3v2095710.1
n.a. myb-related protein M4 [Arabidopsis thaliana] gi|21592858|gb|AAM64808.1| chr6 24623656 24624662 +
3 domain predictions
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LotjaGi1g1v0019000.1
n.a. Myb transcription factor-like protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 LjG1.1_chr1 2364922 2368728 -
3 domain predictions
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LotjaGi1g1v0019000.2
n.a. Myb family transcription factor family protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 LjG1.1_chr1 2364922 2368728 -
3 domain predictions
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LotjaGi1g1v0019000.3
n.a. Myb family transcription factor family protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 LjG1.1_chr1 2364922 2368728 -
3 domain predictions
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LotjaGi1g1v0019000.4
n.a. Myb family transcription factor family protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 LjG1.1_chr1 2365487 2368675 -
3 domain predictions
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LotjaGi1g1v0054100.1
n.a. MYB-related transcription factor; TAIR: AT5G55020.1 myb domain protein 120; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|A0A0B0MQC6|A0A0B0MQC6_GOSAR Transcription factor GAMYB; Found in the gene: LotjaGi1g1v0054100 LjG1.1_chr1 7639250 7640137 -
4 domain predictions
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LotjaGi1g1v0076100.1
n.a. Myb transcription factor; TAIR: AT4G37260.1 myb domain protein 73; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|I1JIG1|I1JIG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0076100 LjG1.1_chr1 10965794 10967788 -
4 domain predictions
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LotjaGi1g1v0076100.2
n.a. Myb transcription factor; TAIR: AT4G37260.1 myb domain protein 73; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|I1JIG1|I1JIG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0076100 LjG1.1_chr1 10965984 10967539 -
4 domain predictions
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LotjaGi1g1v0081100_LC.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|I3STE6|I3STE6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0081100_LC LjG1.1_chr1 11713714 11716387 -
4 domain predictions
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LotjaGi1g1v0081200.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151S1M9|A0A151S1M9_CAJCA Myb-like protein J; Found in the gene: LotjaGi1g1v0081200 LjG1.1_chr1 11725813 11728383 -
4 domain predictions
 –