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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009057
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 1036 results. Now displaying 9 of 21 with 50 rows per page. This search has taken 6.196s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v2665270.1
n.a. PREDICTED: homeobox-leucine zipper protein HOX32-like [Glycine max] gi|356528394|ref|XP_003532788.1| chr4 36047153 36053814 +
3 domain predictions
1 GO term
Lj4g3v2691870.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356525975|ref|XP_003531595.1| chr4 36263484 36264586 +
3 domain predictions
1 GO term
Lj4g3v2859520.1
n.a. Myb-like transcription factor [Medicago truncatula] gi|357520271|ref|XP_003630424.1| chr4 38243771 38245463 +
3 domain predictions
1 GO term
Lj4g3v2871910.1
n.a. GT-2-related protein [Arabidopsis thaliana] gi|30685749|ref|NP_850213.1| chr4 38424566 38427458 +
3 domain predictions
1 GO term
Lj4g3v2976880.1
n.a. POX family protein isoform 1 [Theobroma cacao] gi|508777567|gb|EOY24823.1| chr4 39394813 39398033 +
3 domain predictions
1 GO term
Lj4g3v2989050.1
n.a. PREDICTED: transcription factor MYB21-like [Glycine max] gi|356528704|ref|XP_003532939.1| chr4 39481945 39484421 -
3 domain predictions
1 GO term
Lj4g3v3014230.1
n.a. PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Cucumis sativus] gi|449462521|ref|XP_004148989.1| chr4 39991136 39993763 +
2 domain predictions
1 GO term
Lj4g3v3016310.1
n.a. MYB transcription factor MYB127 [Glycine max] gi|351721742|ref|NP_001235940.1| chr4 40428392 40429929 -
3 domain predictions
1 GO term
Lj4g3v3113240.1
n.a. PREDICTED: two-component response regulator ARR2-like isoform X1 [Cicer arietinum] gi|502123743|ref|XP_004498241.1| chr4 41628829 41631066 +
2 domain predictions
1 GO term
Lj4g3v3114830.1
n.a. NARROW ORGAN 1 [Lotus japonicus] gi|402575786|gb|AFQ69083.1| chr4 42133062 42135247 -
3 domain predictions
1 GO term
Lj5g3v0065670.1
n.a. PREDICTED: transcriptional activator Myb-like [Cicer arietinum] gi|502132955|ref|XP_004501595.1| chr5 263876 265172 +
3 domain predictions
1 GO term
Lj5g3v0069820.1
n.a. PREDICTED: probable transcription factor KAN4-like [Glycine max] gi|356564221|ref|XP_003550354.1| chr5 343028 346945 +
3 domain predictions
1 GO term
Lj5g3v0104840.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356553883|ref|XP_003545280.1| chr5 876730 877937 +
3 domain predictions
1 GO term
Lj5g3v0296120.1
n.a. MYB transcription factor MYB70 [Glycine max] gi|351728037|ref|NP_001237693.1| chr5 2711330 2713222 -
3 domain predictions
1 GO term
Lj5g3v0523200.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356562101|ref|XP_003549312.1| chr5 5499107 5503976 -
3 domain predictions
1 GO term
Lj5g3v0526310.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356519856|ref|XP_003528585.1| chr5 5549731 5550947 +
3 domain predictions
1 GO term
Lj5g3v0554360.1
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR12-like [Glycine max] gi|356554201|ref|XP_003545437.1| chr5 6662293 6663851 -
3 domain predictions
1 GO term
Lj5g3v0615930.1
n.a. MYB transcription factor MYB118 [Glycine max] gi|351720810|ref|NP_001235909.1| chr5 7967961 7972152 +
3 domain predictions
1 GO term
Lj5g3v0615930.2
n.a. PREDICTED: transcription factor ASG4-like [Glycine max] gi|356545959|ref|XP_003541400.1| chr5 7967961 7973083 +
3 domain predictions
1 GO term
Lj5g3v0659660.1
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262216 +
3 domain predictions
1 GO term
Lj5g3v0659660.2
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262695 +
3 domain predictions
1 GO term
Lj5g3v0659660.3
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9260071 9262695 +
3 domain predictions
1 GO term
Lj5g3v0659720.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356515054|ref|XP_003526216.1| chr5 9279481 9282099 +
3 domain predictions
1 GO term
Lj5g3v0866920.1
n.a. sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297834744|ref|XP_002885254.1| chr5 12369304 12371040 +
3 domain predictions
1 GO term
Lj5g3v0866930.1
n.a. sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297834744|ref|XP_002885254.1| chr5 12370914 12373160 +
2 domain predictions
1 GO term
Lj5g3v0900910.1
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502122817|ref|XP_004497904.1| chr5 13428619 13432199 +
3 domain predictions
1 GO term
Lj5g3v0921010.1
n.a. PREDICTED: helicase SRCAP-like [Cicer arietinum] gi|502122805|ref|XP_004497900.1| chr5 13612718 13643190 +
2 domain predictions
1 GO term
Lj5g3v1516750.1
n.a. PREDICTED: telomere repeat-binding factor 4-like isoform X1 [Cicer arietinum] gi|502081399|ref|XP_004486855.1| chr5 22107626 22111188 -
3 domain predictions
1 GO term
Lj5g3v1533360.1
n.a. R2R3-MYB transcription factor [Medicago truncatula] gi|357441967|ref|XP_003591261.1| chr5 22434409 22436259 +
3 domain predictions
1 GO term
Lj5g3v1562120.1
n.a. R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330300|gb|AFK29428.1| chr5 22819948 22821274 +
3 domain predictions
1 GO term
Lj5g3v1601810.1
n.a. PREDICTED: transcription factor MYB12-like [Glycine max] gi|356534872|ref|XP_003535975.1| chr5 23243576 23247336 -
3 domain predictions
1 GO term
Lj5g3v1697860.1
n.a. PREDICTED: myb family transcription factor APL-like [Cicer arietinum] gi|502118139|ref|XP_004496120.1| chr5 24448260 24451694 -
3 domain predictions
1 GO term
Lj5g3v1774720.1
n.a. Two-component response regulator ARR14 [Medicago truncatula] gi|357488375|ref|XP_003614475.1| chr5 25244005 25246435 +
3 domain predictions
1 GO term
Lj5g3v1793370.1
n.a. PREDICTED: trihelix transcription factor GTL1-like [Cicer arietinum] gi|502118337|ref|XP_004496217.1| chr5 25478335 25481075 +
2 domain predictions
1 GO term
Lj5g3v1839400.1
n.a. Nuclear receptor corepressor [Medicago truncatula] gi|357443347|ref|XP_003591951.1| chr5 26227010 26236513 +
3 domain predictions
1 GO term
Lj5g3v1839400.2
n.a. Nuclear receptor corepressor [Medicago truncatula] gi|357443347|ref|XP_003591951.1| chr5 26227010 26236513 +
3 domain predictions
1 GO term
Lj5g3v1988660.1
n.a. MYB transcription factor MYB148 [Glycine max] gi|110931796|gb|ABH02897.1| chr5 27904206 27908894 +
3 domain predictions
1 GO term
Lj5g3v2013880.1
n.a. PREDICTED: transcription factor LAF1-like [Cicer arietinum] gi|502120069|ref|XP_004496837.1| chr5 28394582 28397466 -
3 domain predictions
1 GO term
Lj5g3v2017090.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356535894|ref|XP_003536477.1| chr5 28511890 28517227 -
3 domain predictions
1 GO term
Lj5g3v2017090.2
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cicer arietinum] gi|502119362|ref|XP_004496593.1| chr5 28511890 28516803 -
3 domain predictions
1 GO term
Lj5g3v2112070.1
n.a. PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 [Cicer arietinum] gi|502120282|ref|XP_004496910.1| chr5 30259229 30267369 +
3 domain predictions
1 GO term
Lj5g3v2112070.3
n.a. PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 [Cicer arietinum] gi|502120282|ref|XP_004496910.1| chr5 30263234 30267369 +
3 domain predictions
1 GO term
Lj5g3v2152710.1
n.a. PREDICTED: myb-related protein 315-like [Glycine max] gi|356573735|ref|XP_003555012.1| chr5 30817680 30818206 +
3 domain predictions
1 GO term
Lj5g3v2237580.1
n.a. syringolide-induced protein 1-3-1B [Glycine max] gi|351725743|ref|NP_001237103.1| chr5 32082780 32084776 +
3 domain predictions
1 GO term
Lj5g3v2238710.1
n.a. PREDICTED: BEL1-like homeodomain protein 10-like [Glycine max] gi|356551876|ref|XP_003544298.1| chr5 32133218 32137738 +
3 domain predictions
1 GO term
Lj5g3v2238720.1
n.a. PREDICTED: BEL1-like homeodomain protein 11-like [Glycine max] gi|356509666|ref|XP_003523567.1| chr5 32140782 32143646 +
3 domain predictions
1 GO term
Lj5g3v2241390.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357438793|ref|XP_003589673.1| chr5 32407199 32411612 -
3 domain predictions
1 GO term
Lj5g3v2258260.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356550836|ref|XP_003543789.1| chr5 32680289 32681236 +
3 domain predictions
1 GO term
Lj5g3v2264060.1
n.a. PREDICTED: WUSCHEL-related homeobox 13-like [Glycine max] gi|356536482|ref|XP_003536766.1| chr5 33072115 33074994 +
3 domain predictions
1 GO term
Lj5g3v2298100.1
n.a. PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356553883|ref|XP_003545280.1| chr5 33860250 33860626 +
3 domain predictions
1 GO term