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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 891 results. Now displaying 4 of 18 with 50 rows per page. This search has taken 5.361s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3590740.1
n.a. PREDICTED: U-box domain-containing protein 9-like [Glycine max] gi|356567779|ref|XP_003552093.1| chr1 41224523 41227552 -
2 domain predictions
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Lj1g3v3716950.1
n.a. Exportin-1 [Medicago truncatula] gi|357481145|ref|XP_003610858.1| chr1 42822951 42836649 +
2 domain predictions
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Lj1g3v3833890.1
n.a. PREDICTED: protein TPLATE-like [Cicer arietinum] gi|502165334|ref|XP_004513531.1| chr1 43467769 43475597 +
2 domain predictions
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Lj1g3v3974990.1
n.a. ARM repeat superfamily protein [Theobroma cacao] gi|508719314|gb|EOY11211.1| chr1 46671810 46675736 +
2 domain predictions
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Lj1g3v3975340.1
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502107149|ref|XP_004493173.1| chr1 46819765 46831546 -
2 domain predictions
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Lj1g3v3975340.2
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502107149|ref|XP_004493173.1| chr1 46825148 46831546 -
2 domain predictions
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Lj1g3v4276570.1
n.a. armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|334186063|ref|NP_001190119.1| chr1 50341663 50347247 +
2 domain predictions
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Lj1g3v4276570.2
n.a. armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|334186061|ref|NP_191316.5| chr1 50341663 50347247 +
2 domain predictions
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Lj1g3v4277590.1
n.a. binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297817084|ref|XP_002876425.1| chr1 50349897 50356762 -
2 domain predictions
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Lj1g3v4433200.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr1 51667606 51672748 -
2 domain predictions
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Lj1g3v4483390.1
n.a. PREDICTED: deoxyhypusine hydroxylase-like [Glycine max] gi|356504995|ref|XP_003521278.1| chr1 52482978 52484969 +
2 domain predictions
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Lj1g3v4515400.1
n.a. PREDICTED: U-box domain-containing protein 3-like [Glycine max] gi|356572260|ref|XP_003554287.1| chr1 52872716 52877549 +
2 domain predictions
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Lj1g3v4538880.1
n.a. PREDICTED: CLIP-associated protein-like isoform X2 [Cicer arietinum] gi|502110335|ref|XP_004493856.1| chr1 53576330 53591514 +
2 domain predictions
 –
Lj1g3v4538890.1
n.a. CLIP-associating protein [Medicago truncatula] gi|357510363|ref|XP_003625470.1| chr1 53586237 53588161 +
2 domain predictions
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Lj1g3v4614460.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Cicer arietinum] gi|502111485|ref|XP_004494071.1| chr1 55146847 55152173 -
2 domain predictions
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Lj1g3v4670320.2
n.a. PREDICTED: maestro heat-like repeat-containing protein family member 1-like isoform X3 [Cicer arietinum] gi|502111552|ref|XP_004494091.1| chr1 55436866 55459696 -
2 domain predictions
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Lj1g3v4680350.1
n.a. PREDICTED: LOW QUALITY PROTEIN: HEAT repeat-containing protein 7A homolog [Glycine max] gi|356570788|ref|XP_003553566.1| chr1 55477500 55487408 +
2 domain predictions
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Lj1g3v4680350.2
n.a. PREDICTED: LOW QUALITY PROTEIN: HEAT repeat-containing protein 7A homolog [Glycine max] gi|356570788|ref|XP_003553566.1| chr1 55477500 55487408 +
2 domain predictions
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Lj1g3v4730380.1
n.a. Rix1 complex component domain-containing protein [Arabidopsis thaliana] gi|334187464|ref|NP_196253.2| chr1 56642360 56645911 -
2 domain predictions
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Lj1g3v4752550.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Glycine max] gi|356503852|ref|XP_003520716.1| chr1 56739621 56741689 +
2 domain predictions
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Lj1g3v4764190.1
n.a. PREDICTED: cohesin subunit SA-1-like [Glycine max] gi|356505485|ref|XP_003521521.1| chr1 57268286 57284879 -
2 domain predictions
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Lj1g3v4955410.2
n.a. PREDICTED: protein HASTY 1-like [Glycine max] gi|356504082|ref|XP_003520828.1| chr1 60337103 60340777 -
2 domain predictions
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Lj1g3v5000600.1
n.a. PREDICTED: exportin-4-like isoform X1 [Cicer arietinum] gi|502113754|ref|XP_004494748.1| chr1 60868955 60875929 -
2 domain predictions
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Lj1g3v5020850.1
n.a. PREDICTED: LOW QUALITY PROTEIN: translational activator GCN1-like [Cicer arietinum] gi|502113779|ref|XP_004494756.1| chr1 61091706 61117409 -
2 domain predictions
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Lj1g3v5020920.1
n.a. PREDICTED: U-box domain-containing protein 9-like [Cicer arietinum] gi|502113800|ref|XP_004494763.1| chr1 61173643 61175993 +
2 domain predictions
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Lj1g3v5062370.1
n.a. PREDICTED: exportin-T-like [Glycine max] gi|356506134|ref|XP_003521842.1| chr1 62111090 62129758 +
2 domain predictions
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Lj1g3v5062370.2
n.a. PREDICTED: exportin-T-like [Glycine max] gi|356506134|ref|XP_003521842.1| chr1 62111090 62130132 +
2 domain predictions
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Lj1g3v5062370.3
n.a. PREDICTED: exportin-T-like [Glycine max] gi|356506134|ref|XP_003521842.1| chr1 62111090 62136281 +
2 domain predictions
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Lj1g3v5062660.1
n.a. PREDICTED: pumilio homolog 23-like [Glycine max] gi|356506124|ref|XP_003521837.1| chr1 62211608 62216973 +
2 domain predictions
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Lj2g3v0636850.1
n.a. PREDICTED: U-box domain-containing protein 21-like [Glycine max] gi|356522898|ref|XP_003530079.1| chr2 10377147 10378834 +
2 domain predictions
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Lj2g3v0742070.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] gi|356520585|ref|XP_003528942.1| chr2 11733369 11742399 +
2 domain predictions
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Lj2g3v0878940.1
n.a. PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Glycine max] gi|356497575|ref|XP_003517635.1| chr2 13503623 13511160 -
2 domain predictions
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Lj2g3v0922610.1
n.a. PREDICTED: U-box domain-containing protein 3-like [Cicer arietinum] gi|502090462|ref|XP_004489236.1| chr2 14723998 14724916 -
2 domain predictions
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Lj2g3v0922620.1
n.a. PREDICTED: U-box domain-containing protein 3-like [Cicer arietinum] gi|502090462|ref|XP_004489236.1| chr2 14724074 14725652 -
2 domain predictions
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Lj2g3v0933980.1
n.a. RST1 [Arabidopsis thaliana] gi|32250969|gb|AAP74222.1| chr2 14901215 14915884 -
2 domain predictions
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Lj2g3v1014440.1
n.a. ARM repeat superfamily protein isoform 1 [Theobroma cacao] gi|508710457|gb|EOY02354.1| chr2 15625654 15627772 +
2 domain predictions
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Lj2g3v1014440.2
n.a. ARM repeat superfamily protein isoform 1 [Theobroma cacao] gi|508710457|gb|EOY02354.1| chr2 15625654 15629299 +
2 domain predictions
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Lj2g3v1020040.1
n.a. PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1| chr2 15918016 15920723 -
2 domain predictions
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Lj2g3v1056990.1
n.a. PREDICTED: thyroid adenoma-associated protein homolog [Cicer arietinum] gi|502090932|ref|XP_004489387.1| chr2 16730020 16733358 +
2 domain predictions
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Lj2g3v1079580.1
n.a. PREDICTED: nipped-B-like protein-like [Cicer arietinum] gi|502091147|ref|XP_004489457.1| chr2 17560308 17570082 -
2 domain predictions
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Lj2g3v1155670.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] gi|356499699|ref|XP_003518674.1| chr2 18333487 18339185 +
2 domain predictions
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Lj2g3v1196320.1
n.a. PREDICTED: importin-9-like [Cicer arietinum] gi|502094768|ref|XP_004490293.1| chr2 18943791 18961558 -
2 domain predictions
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Lj2g3v1196320.2
n.a. PREDICTED: importin-9-like [Cicer arietinum] gi|502094768|ref|XP_004490293.1| chr2 18943791 18950683 -
2 domain predictions
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Lj2g3v1238830.1
n.a. RNA polymerase II-associated protein [Medicago truncatula] gi|357487829|ref|XP_003614202.1| chr2 19595952 19604182 -
2 domain predictions
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Lj2g3v1378900.1
n.a. PREDICTED: AP-1 complex subunit gamma-2-like isoform X1 [Cicer arietinum] gi|502093017|ref|XP_004489861.1| chr2 21792748 21806224 -
2 domain predictions
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Lj2g3v1391600.1
n.a. PREDICTED: U-box domain-containing protein 19-like [Cicer arietinum] gi|502093005|ref|XP_004489855.1| chr2 22066031 22068403 +
2 domain predictions
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Lj2g3v1415490.1
n.a. Armadillo repeat only 4 [Theobroma cacao] gi|508708711|gb|EOY00608.1| chr2 22480142 22482817 -
2 domain predictions
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Lj2g3v1575300.1
n.a. PREDICTED: armadillo repeat-containing protein 6 [Glycine max] gi|356521205|ref|XP_003529247.1| chr2 25160604 25161623 +
2 domain predictions
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Lj2g3v1575310.1
n.a. PREDICTED: armadillo repeat-containing protein 6 [Glycine max] gi|356521205|ref|XP_003529247.1| chr2 25160676 25161711 +
2 domain predictions
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Lj2g3v1695200.1
n.a. Vacuolar protein [Medicago truncatula] gi|357483789|ref|XP_003612181.1| chr2 26143345 26144685 -
2 domain predictions
 –