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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029052
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 237 results. Now displaying 5 of 5 with 50 rows per page. This search has taken 6.804s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0185100.4
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|O65846|O65846_MEDSA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0185100 LjG1.1_chr5 47145292 47148836 +
2 domain predictions
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LotjaGi5g1v0185100.5
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|O65846|O65846_MEDSA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0185100 LjG1.1_chr5 47145292 47148842 +
2 domain predictions
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LotjaGi5g1v0207500.1
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|I3TAF9|I3TAF9_LOTJA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0207500 LjG1.1_chr5 50927915 50935497 +
2 domain predictions
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LotjaGi5g1v0207500.2
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|I3TAF9|I3TAF9_LOTJA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0207500 LjG1.1_chr5 50928049 50935152 +
2 domain predictions
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LotjaGi5g1v0207500.3
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|I3TAF9|I3TAF9_LOTJA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0207500 LjG1.1_chr5 50928406 50931446 +
2 domain predictions
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LotjaGi5g1v0207500.4
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|I3TAF9|I3TAF9_LOTJA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0207500 LjG1.1_chr5 50928406 50931645 +
2 domain predictions
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LotjaGi5g1v0261000.1
n.a. Serine/threonine-protein phosphatase; TAIR: AT4G03080.1 BRI1 suppressor 1 (BSU1)-like 1; Swiss-Prot: sp|Q8L7U5|BSL1_ARATH Serine/threonine-protein phosphatase BSL1; TrEMBL-Plants: tr|I1JFE9|I1JFE9_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0261000 LjG1.1_chr5 56963942 56980667 +
2 domain predictions
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LotjaGi5g1v0261000.2
n.a. Serine/threonine-protein phosphatase; TAIR: AT4G03080.1 BRI1 suppressor 1 (BSU1)-like 1; Swiss-Prot: sp|Q8L7U5|BSL1_ARATH Serine/threonine-protein phosphatase BSL1; TrEMBL-Plants: tr|I1JFE9|I1JFE9_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0261000 LjG1.1_chr5 56964341 56980263 +
2 domain predictions
 –
LotjaGi5g1v0261000.3
n.a. Serine/threonine-protein phosphatase; TAIR: AT4G03080.1 BRI1 suppressor 1 (BSU1)-like 1; Swiss-Prot: sp|Q8L7U5|BSL1_ARATH Serine/threonine-protein phosphatase BSL1; TrEMBL-Plants: tr|I1JFE9|I1JFE9_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0261000 LjG1.1_chr5 56964341 56980263 +
2 domain predictions
 –
LotjaGi5g1v0261000.4
n.a. Serine/threonine-protein phosphatase; TAIR: AT4G03080.1 BRI1 suppressor 1 (BSU1)-like 1; Swiss-Prot: sp|Q8L7U5|BSL1_ARATH Serine/threonine-protein phosphatase BSL1; TrEMBL-Plants: tr|I1JFE9|I1JFE9_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0261000 LjG1.1_chr5 56964341 56980263 +
2 domain predictions
 –
LotjaGi5g1v0261000.5
n.a. Serine/threonine-protein phosphatase; TAIR: AT4G03080.1 BRI1 suppressor 1 (BSU1)-like 1; Swiss-Prot: sp|Q8L7U5|BSL1_ARATH Serine/threonine-protein phosphatase BSL1; TrEMBL-Plants: tr|I1JFE9|I1JFE9_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0261000 LjG1.1_chr5 56964341 56980263 +
2 domain predictions
 –
LotjaGi5g1v0261000.6
n.a. Serine/threonine-protein phosphatase; TAIR: AT4G03080.1 BRI1 suppressor 1 (BSU1)-like 1; Swiss-Prot: sp|Q8L7U5|BSL1_ARATH Serine/threonine-protein phosphatase BSL1; TrEMBL-Plants: tr|A0A0B2SIQ5|A0A0B2SIQ5_GLYSO Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0261000 LjG1.1_chr5 56964341 56980263 +
2 domain predictions
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LotjaGi5g1v0261000.7
n.a. Serine/threonine-protein phosphatase; TAIR: AT4G03080.1 BRI1 suppressor 1 (BSU1)-like 1; Swiss-Prot: sp|Q60EX6|BSL1_ORYSJ Serine/threonine-protein phosphatase BSL1 homolog; TrEMBL-Plants: tr|A0A0S3SS72|A0A0S3SS72_PHAAN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0261000 LjG1.1_chr5 56976823 56980263 +
2 domain predictions
 –
LotjaGi5g1v0355100.1
n.a. Serine/threonine-protein phosphatase; TAIR: AT1G50370.1 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q8LSN3|FYPP_PEA Phytochrome-associated serine/threonine-protein phosphatase; TrEMBL-Plants: tr|I3SLY3|I3SLY3_LOTJA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0355100 LjG1.1_chr5 67051352 67057694 +
2 domain predictions
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LotjaGi5g1v0355100.2
n.a. Serine/threonine-protein phosphatase; TAIR: AT1G50370.1 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q8LSN3|FYPP_PEA Phytochrome-associated serine/threonine-protein phosphatase; TrEMBL-Plants: tr|I3SLY3|I3SLY3_LOTJA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0355100 LjG1.1_chr5 67051479 67057026 +
2 domain predictions
 –
LotjaGi5g1v0355100.3
n.a. Serine/threonine-protein phosphatase; TAIR: AT1G50370.1 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q8LSN3|FYPP_PEA Phytochrome-associated serine/threonine-protein phosphatase; TrEMBL-Plants: tr|I3SLY3|I3SLY3_LOTJA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0355100 LjG1.1_chr5 67051708 67057227 +
2 domain predictions
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LotjaGi6g1v0005900.1
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 LjG1.1_chr6 1213620 1218666 -
2 domain predictions
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LotjaGi6g1v0005900.2
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 LjG1.1_chr6 1214104 1218621 -
2 domain predictions
 –
LotjaGi6g1v0005900.3
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 LjG1.1_chr6 1214173 1218622 -
2 domain predictions
 –
LotjaGi6g1v0005900.4
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 LjG1.1_chr6 1214265 1218614 -
2 domain predictions
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LotjaGi6g1v0005900.5
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 LjG1.1_chr6 1215721 1218217 -
2 domain predictions
 –
LotjaGi6g1v0005900.6
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 LjG1.1_chr6 1215721 1218608 -
2 domain predictions
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LotjaGi6g1v0005900.7
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 LjG1.1_chr6 1215869 1218217 -
2 domain predictions
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LotjaGi6g1v0038700.2
n.a. Purple acid phosphatase; TAIR: AT3G07130.1 purple acid phosphatase 15; Swiss-Prot: sp|Q9SFU3|PPA15_ARATH Purple acid phosphatase 15; TrEMBL-Plants: tr|I1MY91|I1MY91_SOYBN Purple acid phosphatase; Found in the gene: LotjaGi6g1v0038700 LjG1.1_chr6 7534999 7538389 -
2 domain predictions
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LotjaGi6g1v0038700.5
n.a. Purple acid phosphatase; TAIR: AT3G07130.1 purple acid phosphatase 15; Swiss-Prot: sp|Q9SFU3|PPA15_ARATH Purple acid phosphatase 15; TrEMBL-Plants: tr|I1MY91|I1MY91_SOYBN Purple acid phosphatase; Found in the gene: LotjaGi6g1v0038700 LjG1.1_chr6 7535214 7539592 -
2 domain predictions
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LotjaGi6g1v0038700.6
n.a. Purple acid phosphatase; TAIR: AT3G07130.1 purple acid phosphatase 15; Swiss-Prot: sp|Q9SFU3|PPA15_ARATH Purple acid phosphatase 15; TrEMBL-Plants: tr|I1MY91|I1MY91_SOYBN Purple acid phosphatase; Found in the gene: LotjaGi6g1v0038700 LjG1.1_chr6 7535328 7539397 -
2 domain predictions
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LotjaGi6g1v0166700.1
n.a. Purple acid phosphatase; TAIR: AT3G20500.1 purple acid phosphatase 18; Swiss-Prot: sp|Q9LJU7|PPA18_ARATH Purple acid phosphatase 18; TrEMBL-Plants: tr|G0T427|G0T427_SOYBN Purple acid phosphatase; Found in the gene: LotjaGi6g1v0166700 LjG1.1_chr6 45085805 45089835 -
2 domain predictions
 –
LotjaGi6g1v0166700.2
n.a. Purple acid phosphatase; TAIR: AT3G20500.1 purple acid phosphatase 18; Swiss-Prot: sp|Q9LJU7|PPA18_ARATH Purple acid phosphatase 18; TrEMBL-Plants: tr|A0A151T1M0|A0A151T1M0_CAJCA Purple acid phosphatase; Found in the gene: LotjaGi6g1v0166700 LjG1.1_chr6 45086250 45088153 -
2 domain predictions
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LotjaGi6g1v0170500.1
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G42810.1 protein phosphatase 5.2; Swiss-Prot: sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5; TrEMBL-Plants: tr|I1KY36|I1KY36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0170500 LjG1.1_chr6 45713164 45722095 +
2 domain predictions
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LotjaGi6g1v0170500.2
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G42810.2 protein phosphatase 5.2; Swiss-Prot: sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5; TrEMBL-Plants: tr|A0A0B2NRB4|A0A0B2NRB4_GLYSO Serine/threonine-protein phosphatase 5; Found in the gene: LotjaGi6g1v0170500 LjG1.1_chr6 45714190 45721330 +
2 domain predictions
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LotjaGi6g1v0170500.3
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G42810.1 protein phosphatase 5.2; Swiss-Prot: sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5; TrEMBL-Plants: tr|I1KY36|I1KY36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0170500 LjG1.1_chr6 45714190 45721330 +
2 domain predictions
 –
LotjaGi6g1v0170500.4
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G42810.2 protein phosphatase 5.2; Swiss-Prot: sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5; TrEMBL-Plants: tr|A0A0B2NRB4|A0A0B2NRB4_GLYSO Serine/threonine-protein phosphatase 5; Found in the gene: LotjaGi6g1v0170500 LjG1.1_chr6 45714190 45721330 +
2 domain predictions
 –
LotjaGi6g1v0170500.5
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G42810.1 protein phosphatase 5.2; Swiss-Prot: sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5; TrEMBL-Plants: tr|I1KY36|I1KY36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0170500 LjG1.1_chr6 45714190 45721330 +
2 domain predictions
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LotjaGi6g1v0205000.1
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein; TAIR: AT4G30993.2 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q9SCX8|PPA17_ARATH Purple acid phosphatase 17; TrEMBL-Plants: tr|A0A072V8E7|A0A072V8E7_MEDTR Calcineurin-like metallo-phosphoesterase superfamily protein; Found in the gene: LotjaGi6g1v0205000 LjG1.1_chr6 50212765 50216326 -
2 domain predictions
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LotjaGi6g1v0205200.1
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein; TAIR: AT4G30993.2 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q9SCX8|PPA17_ARATH Purple acid phosphatase 17; TrEMBL-Plants: tr|A0A072V8E7|A0A072V8E7_MEDTR Calcineurin-like metallo-phosphoesterase superfamily protein; Found in the gene: LotjaGi6g1v0205200 LjG1.1_chr6 50238224 50241503 -
2 domain predictions
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LotjaGi6g1v0234800.1
n.a. Inactive purple acid phosphatase-like protein; TAIR: AT5G57140.1 purple acid phosphatase 28; Swiss-Prot: sp|Q9LU72|PPA28_ARATH Probable inactive purple acid phosphatase 28; TrEMBL-Plants: tr|A0A151RW18|A0A151RW18_CAJCA Putative inactive purple acid phosphatase 28; Found in the gene: LotjaGi6g1v0234800 LjG1.1_chr6 54452306 54455231 -
2 domain predictions
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LotjaGi6g1v0234800.3
n.a. Inactive purple acid phosphatase-like protein; TAIR: AT5G57140.1 purple acid phosphatase 28; Swiss-Prot: sp|Q9LU72|PPA28_ARATH Probable inactive purple acid phosphatase 28; TrEMBL-Plants: tr|K7LC27|K7LC27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0234800 LjG1.1_chr6 54452667 54455134 -
2 domain predictions
 –